Marine Biology Commons^™

Partners In Spread Prevention, Nancy C. Balcom

Wrack Lines

Working together to stop the spread of aquatic invasive species.

Basin Isolation And Oceanographic Features Influencing Lineage Divergence In The Humbug Damselfish (Dascyllus Aruanus) In The Coral Triangle, Jeremy M. Raynal

Biological Sciences Theses & Dissertations

The Coral Triangle (CT) is a hotspot for marine species diversity as well as for intraspecific genetic diversity. Here, nuclear RAG2 and mitochondrial D-Loop genes were used to identify deep genetic divergence among Dascyllus aruanus (Linnaeus, 1758) populations across relatively short scales within the CT. Mitochondrial clades different by greater than 20 mutational steps were geographically isolated from one another across the distance between Java and the Lesser Sunda Islands, and also east and west across the Philippines. Evidence for population structure in the Sulu Sea and at the Lesser Sunda Islands is also identified. The results suggest that the …

Comparative Phylogeography Of The Emperor Snappers Lethrinus Lentjan And Lethrinus Harak (Lethrinidae: Percoidei) In The Coral Triangle, Andrew B. Hines

Biological Sciences Theses & Dissertations

Many questions remain regarding the origins of the well-known peak in marine biodiversity found in the Coral Triangle. Barriers to gene flow may promote lineage diversification and provide the potential for speciation contributing to the high biodiversity in this area. Population structure was examined in two species of Emperor Snappers (Lethrinidae), Lethrinus harak and Lethrinus lentjan. These species were selected because they share similar life-history traits and geographic distributions, but differ in their habitat preferences. Specimens were collected from within the Coral Triangle as well as other localities across the Indo-Pacific. To investigate phylogeographic patterns and structure a hypervariable …

Rapid Change In Shallow Water Fish Species Composition In An Historically Stable Antarctic Environment, Bradley A. Buckley

Biology Faculty Publications and Presentations

McMurdo Sound, Antarctica, is home to a unique marine biota with an ecology that has evolved in this frigid environment over millions of years. The region is one of the least disturbed, and possibly the last pristine, marine ecosystem on Earth. Here, the results of three seasons of fishing in the shallow nearshore waters of McMurdo Sound are reported. A shift in the composition of small fish species at one site, Inaccessible Island, has been observed in just five years. The shift in shallow water species composition occurred during a period that followed the maturation of a commercial fishery for …

Phase Ii Of Tidal Marsh Restoration At Steedman Woods Reserve At York, Maine, David M. Burdick, Chris Peter, Gregg Moore

Jackson Estuarine Laboratory

No abstract provided.

Gulf-Wide Decreases In The Size Of Large Coastal Sharks Documented By Generations Of Fishermen, Sean P. Powers, F. Joel Frodrie, Steven B. Scyphers, J. Marcus Drymon, Robert L. Shipp, Gregory W. Stunz

University Faculty and Staff Publications

Large sharks are top predators in most coastal and marine ecosystems throughout the world, and evidence of their reduced prominence in marine ecosystems has been a serious concern for fisheries and ecosystem management. Unfortunately, quantitative data to document the extent, timing, and consequences of changes in shark populations are scarce, thwarting examination of long-term (decadal, century) trends, and reconstructions based on incomplete data sets have been the subject of debate. Absence of quantitative descriptors of past ecological conditions is a generic problem facing many fields of science but is particularly troublesome for fisheries scientists who must develop specific targets for …

Fall 2013, Nova Southeastern University

Currents

No abstract provided.

Phylogeography Of The Christmas Tree Worm Spirobranchus Corniculatus (Annelida, Serpulidae) From The Coral Triangle, Australia, And Fiji, Abril Iñiguez, Craig J. Starger, Elena Kupriyanova, Demian Willette, Tristan Varman, Joshua A. Drew, Abdul Hamid Toha, Benedict Maralit, Kent E. Carpenter, Paul H. Barber

Biological Sciences Faculty Publications

Christmas Tree Woms is a common name given to a group of large and colourful serpulid polychaetes of the genus Spirobranchus that are obligate symbionts of hermatypic corals commonly found in tropical and subtropical regions world-wide. While current taxonomic species delimitations of these worms are based almost exclusively on the morphology of opercular structures, particularly the number and shape of calcareous opercular horns, high levels of intraspecific variation in this morphological feature have made species boundaries within the genus difficult to resolve. Molecular work to differentiate serpulid worms has long been hampered by the availability of informative markers. Recent work …

Phosphorus Cycling In The Sargasso Sea: Investigation Using The Oxygen Isotopic Composition Of Phosphate, Enzyme-Labeled Fluorescence, And Turnover Times, Karen Mclaughlin, Jill A. Sohm, Gregory A. Cutter, Michael W. Lomas, Adina Paytan

OES Faculty Publications

Dissolved inorganic phosphorus (DIP) concentrations in surface water of vast areas of the ocean are extremely low (<10 nM) and phosphorus (P) availability could limit primary productivity in these regions. We explore the use of oxygen isotopic signature of dissolved phosphate (δ¹⁸O_PO4) to investigate biogeochemical cycling of P in the Sargasso Sea, Atlantic Ocean. Additional techniques for studying P dynamics including ³³P-based DIP turnover time estimates and percent of cells expressing alkaline phosphatase (AP) activity as measured by enzyme-labeling fluorescence are also used. In surface waters, δ¹⁸O_PO4 values were lower than equilibrium by 3–6%, indicative of dissolved organic phosphorous (DOP) remineralization by extracellular enzymes. An isotope mass balance model using a variety of possible combinations of …

Effect Of Laser Ablation Depth In Otolith Life History Scans, Renée R. Hoover, Cynthia M. Jones

OES Faculty Publications

Life history scans of fish otoliths are bringing new insight into the structure, connectivity, and movement of fish populations. Data obtained from such scans, however, possess in-herent limitations that have not yet been fully addressed or understood. For example, several investigators have noted delays in otolith elemental uptake that do not appear to reflect habitat exposure. We hypothesized that the 3-dimensional structure of otoliths may produce sampling artifacts in the results obtained from laser ablation scans. To test this hypothesis, we sampled sagittal otoliths from juvenile Atlantic croaker Micropogonias undulatus with laser ablation inductively coupled plasma mass spectrometry to obtain …

Wintering Eiders Acquire Exceptional Se And Cd Burdens In The Bering Sea: Physiological And Oceanographic Factors, James R. Lovvorn, Merl F. Raisbeck, Lee W. Cooper, Gregory A. Cutter, Micah W. Miller, Marjorie L. Brooks, Jacqueline M. Grebmeier, Angela C. Matz, Cortney M. Schaefer

OES Faculty Publications

During late winter (March) in the Bering Sea, levels of Se in livers and Cd in kidneys of spectacled eiders Somateria fischeri were exceptionally high (up to 489 and 312 µg g⁻¹ dry mass, respectively). Comparison of organ and blood samples during late winter, early spring migration, and breeding suggests that the eiders’ high Se and Cd burdens were accumulated at sea, with highest exposure during winter. High exposure may have resulted from high metabolic demands and food intake, as well as concentrations in food. In the eiders’ remote wintering area, their bivalve prey contained comparable Se levels and …

Bacterial Colonization And Extinction On Marine Aggregates: Stochastic Model Of Species Presence And Abundance, Andrew M. Kramer, M. Maille Lyons, Fred C. Dobbs, John M. Drake

OES Faculty Publications

Organic aggregates provide a favorable habitat for aquatic microbes, are efficiently filtered by shellfish, and may play a major role in the dynamics of aquatic pathogens. Quantifying this role requires understanding how pathogen abundance in the water and aggregate size interact to determine the presence and abundance of pathogen cells on individual aggregates. We build upon current understanding of the dynamics of bacteria and bacterial grazers on aggregates to develop a model for the dynamics of a bacterial pathogen species. The model accounts for the importance of stochasticity and the balance between colonization and extinction. Simulation results suggest that while …

Biology Department Newsletter, No. 3, Sacred Heart University

Biology Newsletter

No abstract provided.

Multiscale Analysis Of Factors That Affect The Distribution Of Sharks Throughout The Northern Gulf Of Mexico, J. Marcus Drymon, Laure Carassou, Sean P. Powers, Mark Grace, John Dindo, Brian Dzwonkowski

University Faculty and Staff Publications

Identification of the spatial scale at which marine communities are organized is critical to proper management, yet this is particularly difficult to determine for highly migratory species like sharks. We used shark catch data collected during 2006–09 from fishery- independent bottom-longline surveys, as well as biotic and abiotic explanatory data to identify the factors that affect the distribution of coastal sharks at 2 spatial scales in the northern Gulf of Mexico. Centered principal component analyses (PCAs) were used to visualize the patterns that characterize shark distributions at small (Alabama and Mississippi coast) and large (northern Gulf of Mexico) spatial scales. …

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

Ontogenetic Shifts In Resource Allocation: Colour Change And Allometric Growth Of Defensive And Reproductive Structures In The Caribbean Spiny Lobster Panulirus Argus, Joshua R. Anderson, Angelo J. Spadaro, J. Antonio Baeza, Donald C. Behringer

Biological Sciences Faculty Publications

Resource allocation theory predicts a disproportionately large allocation of resources to defensive structures during early ontogeny in organisms that are subject to more intense predation at smaller than at larger body sizes. We tested this prediction on the Caribbean spiny lobster Panulirus argus, which exhibits a negative relationship between predation risk and body size with a high natural mortality of smaller individuals. Independent allometric growth analyses demonstrated that numerous defensive structures (e.g. orbital horns, segments supporting the antenna, the tail fan) display negative allometric growth throughout ontogeny. We interpret these findings as lobsters investing disproportionately more resources to defensive …

Herbivory By Parma Mccullochi (Pomacentridae) : Its Role As An Ecosystem Engineer In Temperate Algal-Dominated Reefs, Frederico Vitelli

Theses: Doctorates and Masters

Pomacentridae is one of the most representative families of herbivorous fishes inhabiting both tropical and temperate reefs, yet the vast majority of studies examining feeding within this family have been undertaken in tropical rather than temperate regions. Despite the high abundances of the pomacentrid Parma mccullochi in temperate waters of Western Australia, and their likely importance in removing algae from reefs in the region, there is a lack of information on their diet and their impact on the reef algal community. This study aims to determine the role of Parma mccullochi as an ecosystem engineer on temperate algal-dominated reefs in …

Family Matters: An Analysis Of Genetic Relatedness Of Tetraclita Rubescens (The Pink Volcano Barnacle) Over Several Spatial Scales At Monterey And Bodega Bay, California, Kelly N. Chang

Scripps Senior Theses

Inbreeding involves the mating of closely related individuals at a higher frequency than at random; this can decrease the average fitness of populations and individuals by reducing the presence of heterozygotes and augmenting the expression of deleterious genes. Since marine invertebrates exhibit widespread dispersal, their potential for inbreeding is often disregarded. The adult sessile state of barnacles creates the potential for inbreeding as a result of necessary copulation between neighboring individuals. Depending on the degree of mixing that occurs during dispersal, closely related individuals or siblings may settle in close proximity, generating the possibility of kin aggregation and consequent inbreeding. …

The Effects Of Thermal Stress And Algal Competition On The Early Life-History Stages Of Porites Astreoides And The Development Of Stress-Detecting Biomarkers For Use In Scleractinan Corals, Kevin C. Olsen

UNF Graduate Theses and Dissertations

Scleractinian coral populations are declining worldwide in response to numerous stressors operating on both global and regional scales. Rising sea surface temperatures associated with global climate change and the increasing frequency of coral-macroalgae competitive interactions are two of the gravest ecological drivers facing coral reef ecosystems. However, little is known about how these stressors interact to impact corals, their health, and potential modes of population recovery. These threats also highlight the need to develop reliable techniques that detect stress in multiple life-history stages of hermatypic corals prior to the degradation of coral reef habitats. To address these concerns we evaluated …

Habitat Availability And Heterogeneity And The Indo-Pacific Warm Pool As Predictors Of Marine Species Richness In The Tropical Indo-Pacific, Jonnell C. Sanciangco, Kent E. Carpenter, Peter J. Etnoyer, Fabio Moretzsohn

Biological Sciences Faculty Publications

Range overlap patterns were observed in a dataset of 10,446 expert-derived marine species distribution maps, including 8,295 coastal fishes, 1,212 invertebrates (crustaceans and molluscs), 820 reef-building corals, 50 seagrasses, and 69 mangroves. Distributions of tropical Indo-Pacific shore fishes revealed a concentration of species richness in the northern apex and central region of the Coral Triangle epicenter of marine biodiversity. This pattern was supported by distributions of invertebrates and habitat-forming primary producers. Habitat availability, heterogeneity, and sea surface temperatures were highly correlated with species richness across spatial grains ranging from 23,000 to 5,100,000 km(2) with and without correction for autocorrelation. The …

Genetic Population Structure Of Us Atlantic Coastal Striped Bass (Morone Saxatilis), David T. Gauthier, Corinne A. Audemard, Jeanette E. L. Carlsson, Tanya L. Darden, Michael R. Denson, Kimberly S. Reece, Jens Carlsson

Biological Sciences Faculty Publications

Genetic population structure of anadromous striped bass along the US Atlantic coast was analyzed using 14 neutral nuclear DNA microsatellites. Young-of-the-year and adult striped bass (n = 1114) were sampled from Hudson River, Delaware River, Chesapeake Bay, North Carolina, and South Carolina. Analyses indicated clear population structure with significant genetic differentiation between all regions. Global multilocus F-ST was estimated at 0.028 (P < 0.001). Population structure followed an isolation-by-distance model and temporal sampling indicated a stable population structure more than 2 years at all locations. Significant structure was absent within Hudson River, whereas weak but significant genetic differences were observed between northern and southern samples in Chesapeake Bay. The largest and smallest effective striped bass population sizes were found in Chesapeake Bay and South Carolina, respectively. Coalescence analysis indicated that the highest historical gene flow has been between Chesapeake Bay and Hudson River populations, and that exchange has not been unidirectional. Bayesian analysis of contemporary migration indicated that Chesapeake Bay serves as a major source of migrants for Atlantic coastal regions from Albemarle Sound northward. In addition to examining population genetic structure, the data acquired during this project were capable of serving as a baseline for assigning fish with unknown origin to source region.

Horseshoe Crab Eggs: A Rare Resource For Predators In Long Island Sound, Mark Beekey, Jennifer Mattei, Barbara J. Pierce

Biology Faculty Publications

In Delaware Bay, the spawning of several million horseshoe crabs (Limulus polyphemus) coincides with the arrival of migratory shorebirds that feed on their eggs. High horseshoe crab spawning densities and resulting high egg densities drive egg availability and predation rates. At high spawning densities, female horseshoe crabs perturb previously deposited clutches causing eggs to rise to the sediment surface (surface egg densities average 100,000 eggs m^{− 2}). At the surface (0–5 cm), the eggs are quickly depleted by shorebirds and other predators. This interaction between egg density and egg predation has not been explicitly explored on …

The Biology And Ecology Of Epinephilidae Speciea And Their Implications To Fisheries Management, Jason R. How

Theses: Doctorates and Masters

This thesis examines the biological and ecological aspects of members of the globally exploited Epinephilidae with reference to fisheries management and in particular the use of closures. The leopard coralgrouper Plectropomus leopardus is a common reef fish throughout the Indo-Pacific region and a major target of both commercial and recreational fisheries. There has been limited research on this species in the eastern Indian Ocean, where there are only two populations. An examination of the species found a number of significant biological differences to their eastern Australian con-specifics. Most noticeable was the strong size-related cue over their protogynous sex change. The …

Marine Fungi Of U.S. Gulf Of Mexico Barrier Island Beaches: Biodiversity And Sampling Strategy, Allison Kathleen Walker

Dissertations

Marine fungi are an important but often overlooked component of marine ecosystems. Primarily saprotrophic, they are vital to coastal nutrient cycling processes and food webs. However, basic marine fungal distribution data are lacking in many parts of the world, as is knowledge of the sampling intensity required to characterize the biodiversity of these communities. The roles of substrate, season and latitude in shaping intertidal ascomycete community structure were examined for the U.S. Gulf of Mexico, and the role of sampling frequency on species richness estimates was also addressed. Best sampling practices were developed and 750 collections of beach detritus, sand …

Phenotypic Plasticity Of Oral Jaw Dentition In Archosargus Probatocephalus, Cynthia E. Worcester

Masters Theses & Specialist Projects

Phenotypic plasticity, the capacity of a single genotype to exhibit variable phenotypes in different environments, is common in many species. A sample of wild caught Archosargus probatocephalus, also known as sheepshead, from Florida was randomly divided into two treatment groups: one group was fed soft prey, Mercenaria sp. muscle tissue, and the other group was fed hard prey, Mercenaria sp. in the shell, for 365 days. It was hypothesized that the sheepshead fed hard prey would have a thicker tooth enamel layer containing more calcium, and therefore be stronger than the tooth enamel layer of those fed soft prey …

An Analysis Of Human Disturbance To Rocky Intertidal Communities Of San Luis Obispo County, Grant Tyler Waltz

Master's Theses

ABSTRACT

An Analysis Of Human Disturbance To Rocky Intertidal Communities Of San Luis Obispo County

Grant Tyler Waltz

The number of coastal areas open to public access in California and San Luis Obispo County is increasing due to the acquisition by California State Parks of land previously owned by private entities. For example, California State Parks acquired property from the Hearst Corporation in 2005, which included 18 miles of coastline. California State Parks is responsible for providing public access in these newly acquired areas and also for maintaining the health of the natural systems found on these properties. Part of …

Idiosyncratic Responses Of Seagrass Phenolic Production Following Sea Urchin Grazing, Latina Steele, John F. Valentine

Biology Faculty Publications

While chemical defenses can determine plant persistence in terrestrial ecosystems and some marine macroalgae, their role in determining seagrass persistence in areas of intense grazing is unknown. As a first step toward determining if concentrations of feeding deterrents in seagrasses increase following herbivore attacks, we conducted 4 experiments using a common macrograzer (sea urchin Lytechinus variegatus) and 2 phylogenetically divergent seagrass species (Thalassia testudinum and Halodule wrightii). Macrograzer impacts on production of phenolic acids and condensed tannins varied somewhat idiosyncratically with season, urchin density, and distance from urchin damage. In general, phenolic concentrations were higher in both turtlegrass and shoalgrass …

Spatial And Oceanographic Factors Affecting Black-Legged Kittiwake And Thick-Billed Murre Distributions In The Southeastern Bering Sea, Brian Hoover

Capstone Projects and Master's Theses

The distribution patterns of Thick-billed Murres (Uria lomvia) and Black-legged Kittiwakes (Rissa tridactyla) in the southeastern Bering Sea were documented at sea during vessel-based surveys in July-August of 2008 and 2009. The relationships of murre and kittiwake densities with environmental variables were investigated using binomial generalized additive models (GAMs) to model the presence or absence of birds, and Gamma-error distribution GAMs to model the positive densities of birds. Environmental variables included oceanographic factors (Chlorophyll, Chlorophyll anomalies, Daily SST, Monthly SST), spatial factors (Distance to nearest colony, Distance to 300m shelf break, Depth), and a temporal factor (Year). Nocturnal surveys were …

Life History Of Stranded Bottlenose Dolphins (Tursiops Truncatus) In Virginia, Margaret Cook Lynott

Biological Sciences Theses & Dissertations

Little is known about the life history and overall ecology of bottlenose dolphins that strand in Virginia. In this study, I examined archived life history samples and stranding data from bottlenose dolphins found in Virginia waters to (1) develop growth curves based on ages from sectioned teeth, (2) document characteristics of male and female reproductive organs, and (3) define the relationship between age/length and presence of neonatal characteristics during the first year of life. The Gompertz growth model provided the best fit of growth data for stranded T. truncatus in Virginia. Length at birth and asymptotic length for males were …

A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope

STAR Program Research Presentations

This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …