Marine Biology Commons^™

Coral Reef Change Detection In Remote Pacific Islands Using Support Vector Machine Classifiers, Justin J. Gapper, Hesham El-Askary, Erik Linstead, Thomas Piechota

Mathematics, Physics, and Computer Science Faculty Articles and Research

Despite the abundance of research on coral reef change detection, few studies have been conducted to assess the spatial generalization principles of a live coral cover classifier trained using remote sensing data from multiple locations. The aim of this study is to develop a machine learning classifier for coral dominated benthic cover-type class (CDBCTC) based on ground truth observations and Landsat images, evaluate the performance of this classifier when tested against new data, then deploy the classifier to perform CDBCTC change analysis of multiple locations. The proposed framework includes image calibration, support vector machine (SVM) training and tuning, statistical assessment …

Sex-Specific Personalities In The Purple Marsh Crab, Jillian Sterman, Jessica Barton, Panagiota Delmedico, Samantha Sweeney

DePaul Discoveries

Animals are considered to possess personalities when individuals differ in behavior, and these differences are consistent between situations. Several studies have identified personalities in diverse groups but less is known about personality variation between the sexes. In this study, we examined variation in two key personality traits (boldness, activity) in female and male purple marsh crabs (Sesarma reticulatum) using a semi-field approach. Specifically, we measured boldness and activity on two consecutive days using the same behavioral assays during each time point. Consistency (personality) was determined using Kendall’s coefficient of concordance based on Spearman correlation coefficients for each behavior. …

Effects Of Reduced Ph On Health Biomarkers Of The Seagrass Cymodocea Nodosa, Regan A. Mcenaney

DePaul Discoveries

Ocean acidification is a growing problem that may affect many marine organisms in the future. Within 100 years the pH of the ocean is predicted to decrease to 7.8, from the current ocean pH of around 8.1. Using phenolic acid levels as a stress indicator as well as respiration and chlorophyll content as a measure of health, the effect of lowering pH was tested on the seagrass, Cymodocea nodosa, in a controlled environment. Plant samples, water, and soil were taken from the Bay of Cádiz, Spain, and placed in aquaria in a temperature-controlled room. One control group was left …

On The Composistion Of Cymodocea Nodosa Root Exudate Under Artificial Blue, Green And Natural Light Conditions, Armand Martin, Ben Manriquez, Christian Pompa, Aaron Saper, Kyle A. Grice, Jason Bystriansky

DePaul Discoveries

Seagrasses are identified as a sentinel species: a good indicator of overall marine ecosystem health and function. At the rhizome, they are known to interact with marine bacteria by exchanging energy in the form of glucose and free amino acids secreted through root exudate in exchange for microbe-fixated nitrogen that can be utilized for plant growth. To analyze potential outcomes of possible future changes in light availability, an experiment was designed to collect and analyze the root exudate of Cymodocea nodosa under three light conditions (standard fluorescent light, blue LED, and green LED light). After 72 hours of treatment, the …

Leonardo And The Whale, Kay Etheridge

Biology Faculty Publications

Around 1480, when he was 28 years old, Leonardo da Vinci recorded what may have been a seminal event in his life. In writing of his travels to view nature he recounted an experience in a cave in the Tuscan countryside:

Having wandered for some distance among overhanging rocks, I can to the entrance of a great cavern... [and after some hesitation I entered] drawn by a desire to see whether there might be any marvelous thing within..."

[excerpt]

High Heat Tolerance Is Negatively Correlated With Upper Thermal Tolerance Plasticity In North Eastern Pacific Nudibranch Mollusks, Eric J. Armstrong, Richelle L. Tanner, Jonathon H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Rapid ocean warming may alter habitat suitability and population fitness for marine ectotherms. Susceptibility to thermal perturbations will depend in part on plasticity of a species’ upper thermal limits of performance (CT_max). However, we currently lack data regarding CT_max plasticity for several major marine taxa, including nudibranch mollusks, thus limiting predictive responses to habitat warming for these species. In order to determine relative sensitivity to future warming, we investigated heat tolerance limits (CT_max), heat tolerance plasticity (acclimation response ratio), thermal safety margins, temperature sensitivity of metabolism, and metabolic cost of heat shock in nine species …

Comparing Feeding Accuracy Between High And Low Predation Trinidad Guppies, Lydia J. Bonnell

Honors College Theses

Efficient feeding accuracy could increase an organism’s survival. Although local adaptation in Trinidad guppies is common, the effects on accuracy are unknown. Guppies were wild caught in 2015 and 2017, filmed while capturing prey. Accuracy wasn’t different within samples but differed across samples, possibly due to the prey types used.

Density Of Hemigrapsus Sanguineus And Carcinus Maenas In Kettle Cove, Cape Elizabeth, Maine, Valerie Huston, Teresa Martel, Zimzim Mohamed

Thinking Matters Symposium Archive

Our focus for this project is to determine how the population densities of Hemigrapsus sanguineus, Asian shore crab and Carcinus maenas, European green crabs have shifted over a brief period of time. We are comparing data collected on September 17, 2018, to data collected on October 22, 2018. The location where the two sets of data were collected from is Kettle Cove, Cape Elizabeth, Maine. The GPS coordinance was 43°.33.55N70°.13.40N. We discuss what affects the influences of environmental factors such as temperature, salinity, high intertidal versus low intertidal, and percent ascophyllum cover affect have on the population densities of these …

Quantifying Atlantic Sea Scallop (Placopecten Magellanicus) Larval Abundance Throughout Cape Elizabeth, Maine, Hannah Haskell, Britney Evangelista, Alex Loftis

Thinking Matters Symposium Archive

As markets for the Atlantic Sea scallop are growing, the need for sustainable and reliable harvesting methods such as aquaculture is more imperative than ever. Due to the difficulty of maintaining sea scallop hatcheries, scallop farmers typically collect larvae from the ocean and raise them until a marketable size on lease sites. In order to efficiently collect scallop larvae, being able to predict when the larvae are most abundant in the water column is crucial. The goal of our research was to learn when scallop larvae are most abundant in the water column and to determine if there is a …

Population Dynamics And Demographics Of Spotted Seatrout, Cynoscion Nebulosus, Through Spatial Analysis: Towards An Integrative Management Approach, Ashley Melancon Baer

LSU Doctoral Dissertations

Spotted seatrout (Cynoscion nebulosus) is one of the most highly prized sportfish along the Gulf of Mexico coast, particularly in Louisiana. Although spotted seatrout are considered to be well managed and sustainably fished according to the state’s most recent stock assessment, the spatial ecology of this species is largely understudied in Louisiana waters. Acoustic telemetry is an innovative technology that is commonly used to assess the movements and behavior of aquatic species, and can be used as a tool to address the paucity of information on the spatial dynamics of spotted seatrout. The focus of this study was …

White Shark Genome Reveals Ancient Elasmobranch Adaptations Associated With Wound Healing And The Maintenance Of Genome Stability, Nicholas J. Marra, Michael J. Stanhope, Nathaniel K. Jue, Minghui Wang, Qi Sun, Paulina D. Pavinski Bitar, Vincent P. Richards, Aleksey S. Komissarov, Mike Rayko, Sergey Kliver, Bryce J. Stanhope, Chuck Winkler, Stephen James O'Brien, Agostinho Antunes, Salvador Jorgensen, Mahmood S. Shivji

Biology Faculty Articles

The white shark (Carcharodon carcharias; Chondrichthyes, Elasmobranchii) is one of the most publicly recognized marine animals. Here we report the genome sequence of the white shark and comparative evolutionary genomic analyses to the chondrichthyans, whale shark (Elasmobranchii) and elephant shark (Holocephali), as well as various vertebrates. The 4.63-Gbp white shark genome contains 24,520 predicted genes, and has a repeat content of 58.5%. We provide evidence for a history of positive selection and gene-content enrichments regarding important genome stability-related genes and functional categories, particularly so for the two elasmobranchs. We hypothesize that the molecular adaptive emphasis on genome stability …

Predator Water Balance Alters Intraguild Predation In A Streamsidefood Web, Israel L. Leinbach, Kevin E. Mccluney, John L. Sabo

Biological Sciences Faculty Publications

Previous work suggests that animal water balance can influence trophic interactions, with predators increasing their consumption of water-laden prey to meet water demands.But it is unclear how the need for water interacts with the need for energy to drive trophic interactions under shifting conditions. Using manipulative field experiments, we show that water balance influences the effects of top predators on prey with contrasting ratios of water and energy, altering the frequency of intraguild predation. Water-stressed top predators (large spiders) negatively affect water-laden basal prey (crickets), especially male prey with higher water content, whereas alleviation of water limitation causes top predators …

Depth-Dependent Environmental Drivers Of Microbial Plankton Community Structure In The Northern Gulf Of Mexico, Cole Easson, Jose Lopez

Biology Faculty Articles

The Gulf of Mexico (GoM) is a dynamic marine ecosystem influenced by multiple natural and anthropogenic processes and inputs, such as the intrusion of warm oligotrophic water via the Loop Current, freshwater and nutrient input by the Mississippi River, and hydrocarbon inputs via natural seeps and industrial spills. Microbial plankton communities are important to pelagic food webs including in the GoM but understanding the drivers of the natural dynamics of these passively distributed microorganisms can be challenging in such a large and heterogeneous system. As part of the DEEPEND consortium, we applied high throughput 16S rRNA sequencing to investigate the …

Comparing Orientation Behavior And Prey Preference Of Leptasterias Spp. Between Microhabitats, Jenna C. Sanders, Margaret W. Johnson, C Sarah Cohen

STAR Program Research Presentations

Leptasterias spp. is a species complex of small, six rayed, predatory sea stars that inhabit rocky intertidal communities along the Pacific coast of North America. A developmental mode of brooding their young, rather than broadcasting for planktonic development, limits dispersal away from the natal area, and may also result in fine scale local adaptation of populations. Local adaptation may lead to morphological and behavioral differences among populations, specifically towards the most available prey. Within the rocky intertidalthere are zones of high and low wave impact which create microhabitats with their own selective forces. In areas of high wave impact, stars …

Environmental And Anthropogenic Factors Affecting Coral Health, Kristin Jones

2019 Symposium

Plastic pollution is a large and growing problem in our ever producing world. Not only does it litter our cities, but it is cluttering up the natural world as well, the largest being our oceans. Plastic is dumped into the seas where it floats and slowly breaks down into microplastics that are then ingested by marine animals. I will conduct an experiment to test the effects of micro plastics on coral health by subjecting palythoa corals to different plastic levels in a controlled environment. I hypothesize that corals will ingest micro plastics and will suffer health consequences, leading to a …

Tiger Sharks Eat Songbirds: Reply, J. Marcus Drymon, K. Feldheim, A. M.V. Fournier, A. E. Jefferson, A. M. Kroetz, Sean P. Powers, E. A. Seubert

University Faculty and Staff Publications

In response to our recent paper (Drymon et al. 2019), Yosef (2019) questions the mechanism proposed to explain interactions between tiger sharks (Galeocerdo cuvier) and migratory songbirds, while offering an alternative mechanism based on a single observation. We appreciate the comments from Yosef and the opportunity to respond.

Tiger Sharks Eat Songbirds: Scavenging A Windfall Of Nutrients From The Sky, J. Marcus Drymon, K. Feldheim, A. M.V. Fournier, E. A. Seubert, A. E. Jefferson, A. M. Kroetz, Sean P. Powers

University Faculty and Staff Publications

No abstract provided.

Role Of Managed Marine Areas On The Diversity And Individual Responses Of Rocky Intertidal Shore Grazers In Central Chile, Kathy Liu

Scripps Senior Theses

Many different types of marine benthic herbivores or “grazers” inhabit coastal intertidal zones and play a crucial role in inter- and shallow subtidal ecosystems. Chile has one of the most diverse intertidal zones, but many intertidal grazers are exploited for human consumption. Marine protected areas (MPAs) and marine management and exploitation areas (MEAs) are promising tools for Chile to combat over exploitation of these grazer and other marine resources. This study surveyed the impact of sites with contrasting management on the diversity and abundance of all intertidal grazers and their impact on the size frequency and shell length-body weight allometry …

Assessing Freshwater Mussel (Bivalvia: Unionidae) Assemblages And Effects Of Eutrophication On Pyganodon Grandis In Lakes Of Eastern South Dakota, Katherine M. Wollman

Electronic Theses and Dissertations

Globally, the family Unionidae is the most threatened group of freshwater fauna. South Dakota is well known for its agricultural production, leading to cultural eutrophication from enhanced fertilizers and sediments. This impact can alter species presence, age, growth and mortality. Objectives of this study were to 1) implement the first comprehensive lake survey of freshwater mussels in eastern South Dakota lakes and document distribution, occurrence and relative abundance, 2) evaluate relationships between age, growth and mortality of Pyganodon grandis and lake trophic state. Freshwater mussels were sampled in 2017 from 116 proportionally and randomly selected natural lakes and reservoir basins …

Mapping Status And Conservation Of Global At-Risk Marine Biodiversity, Casey C. O'Hara, Juan Carlos Villaseñor-Derbez, Gina M. Ralph, Benjamin S. Halpern

Biological Sciences Faculty Publications

To conserve marine biodiversity, we must first understand the spatial distribution and status of at‐risk biodiversity. We combined range maps and conservation status for 5,291 marine species to map the global distribution of extinction risk of marine biodiversity. We find that for 83% of the ocean, >25% of assessed species are considered threatened, and 15% of the ocean shows >50% of assessed species threatened when weighting for range‐limited species. By comparing mean extinction risk of marine biodiversity to no‐take marine reserve placement, we identify regions where reserves preferentially afford proactive protection (i.e., preserving low‐risk areas) or reactive protection (i.e., mitigating …

Size And Age Structure Of Introduced Populations Of Blue Catfish (Ictalurus Furcatus) In Two Kansas Reservoirs And Implications For Management, Ernesto Flores

Master's Theses or Doctor of Nursing Practice

ABSTRACT

The introduction of a new fish species into an aquatic ecosystem can bring about many challenges for fisheries managers. Questions might arise for the manager regarding the initial sportfish survival rate, grow rate, reproduction and recruitment, and what kind of impact will the introduction have on the already established populations found in the water body. A new population of fish is often protected using length limit regulations, allowing biologists to gain insight on whether the population will be self-sustaining or in need of periodic stockings. Age and growth information is used to understand population dynamics, estimate annual mortality and …

Larsonia Pterophylla (Cnidaria, Pandeidae) Parasitic On Two Leptocephali: Paraconger Sp. (Congridae) And Callechelyini Gen. Sp. (Ophichthidae) In The Gulf Of Mexico, Matthew S. Woodstock, Charles Golightly, Danté Fenolio, Jon A. Moore

Gulf and Caribbean Research

No abstract provided.

Seasonal Spatial Segregation In Blue Sharks (Prionace Glauca) By Sex And Size Class In The Northeast Pacific Ocean, Sara M. Maxwell, Kylie L. Scales, Steven Bograd, Dana K. Briscoe, Heidi Dewar, Elliott L. Hazen, Rebecca L. Lewison, Heather Welch, Larry B. Crowder

Biological Sciences Faculty Publications

Aim: Animal tracking can provide unique insights into the ecology and conservation of marine species, such as the partitioning of habitat, including differences between life history stages or sexes, and can inform fisheries stock assessments, bycatch reduction and spatial management such as dynamic management.

Location: Northeast Pacific Ocean.

Methods: We used satellite tracking data from 47 blue sharks (Prionace glauca) from the Northeast Pacific to determine movements and home range along the west coast of North America, and sex–size class (immature females, mature males) specific habitat preferences using boosted regression trees. Using a suite of static and dynamic …

Parasitic Dinoflagellate Hematodinium Perezi Prevalence In Larval And Juvenile Blue Crabs Callinectes Sapidus From Coastal Bays Of Virginia, H. J. Small, J. P. Huchin-Mian, K. S. Reece, K. M. Pagenkopp Lohan, Mark J. Butler Iv, J. D. Shields

Biological Sciences Faculty Publications

The parasitic dinoflagellate Hematodinium perezi infects the American blue crab Callinectes sapidus and other decapods along the Eastern seaboard and Gulf of Mexico coast of the USA. Large juvenile and adult blue crabs experience high mortality during seasonal outbreaks of H. perezi, but less is known about its presence in the early life history stages of this host. We determined the prevalence of H. perezi in megalopae and early benthic juvenile crabs from multiple locations along the Virginia portion of the Delmarva Peninsula. The DNA of H. perezi was not detected in any megalopae collected from several locations within …

Editorial: Advances In The Biology And Conservation Of Marine Turtles, Sara M. Maxwell, Annette C. Broderick, Peter H. Dutton, Sabrina Fossette-Halot, Mariana M.P.B. Fuentes, Richard D. Reina

Biological Sciences Faculty Publications

(First Paragraph) Marine turtles have been the subject of research over many decades, inspired by their unique life history and necessitated by their declining populations from a suite of human impacts including direct harvest, bycatch in marine fisheries, pollution, and climate change. Despite this, much about marine turtle biology has remained a mystery (Godley et al., 2008; Rees et al., 2016; Wildermann et al., 2018), but the rate of scientific discovery is increasing rapidly. As research techniques and conservation practices expand, the marine turtle research community has kept abreast of these developments and their application to marine turtles. In this …

Phylogenetic, Genomic, And Biogeographic Characterization Of Anovel And Ubiquitous Marine Invertebrate-Associated Rickettsiales Parasite,Candidatus Aquarickettsia Rohweri, Gen. Nov., Sp. Nov, J. Grace Klinges, Stephanie M. Rosales, Ryan Mcminds, Koty H. Sharp

Arts & Sciences Faculty Publications

Bacterial symbionts are integral to the health and homeostasis of invertebrate hosts. Notably, members of the Rickettsiales genus Wolbachia influence several aspects of the fitness and evolution of their terrestrial hosts, but few analogous partnerships have been found in marine systems. We report here the genome, phylogenetics, and biogeography of a ubiquitous and novel Rickettsiales species that primarily associates with marine organisms. We previously showed that this bacterium was found in scleractinian corals, responds to nutrient exposure, and is associated with reduced host growth and increased mortality. This bacterium, like other Rickettsiales, has a reduced genome indicative of a parasitic …

In The Eye Of The Storm: Houston After Hurricane Harvey, Brandon Tolentino-Serrano

Pomona Senior Theses

Situated in one of the wettest climates in America, Houston, TX has had a long history of heavy rains and unprecedented floods. Unfortunately, floods have become more common over the last few decades as climate change increases the frequency and intensity of hurricanes around the globe. To complicate matters further, Houston has quickly sprawled to accommodate over 2.5 billion people. Rapid urbanization has rendered the landscape even more susceptible to floods through excess concretization and watershed disturbance. This thesis traces the history of the Bayou City in relation to the damages caused by Hurricane Harvey. By mapping out the original …

Spatial Variability In Recruitment Of Chilipepper Rockfish (Sebastes Goodei) In The California Current System, Laura K. Solinger

Cal Poly Humboldt theses and projects

Properly describing variability in population dynamics (e.g., growth, fecundity, recruitment) is expected to improve management of important fisheries stocks (Maunder & Piner, 2014). As recruitment to most fish stocks is determined during early life history stages (Houde, 1997; Iles & Beverton, 2000), and early life history stages are influenced by oceanographic conditions (Bjorkstedt et al. 2002; Laidig, 2010), understanding how environmental stochasticity influences recruitment deviations has potential to improve estimates of stock productivity and how productivity might change over time to support more effective management. Chilipepper Rockfish (Sebastes goodei) are an important commercial species that is managed as …

Seaweed Community Structure Along Environmental Gradients In An Ocean-Dominated Estuary, Saskia A. Raether

Cal Poly Humboldt theses and projects

Macrophyte community structure in estuaries that have been modified by the addition of hard substrata are poorly documented, especially in relation to the physical and environmental gradients that shape them. Therefore, this study describes the summer macrophyte flora that occurs on hard and soft substrata throughout Humboldt Bay, CA and tests how the macrophyte communities correlate to measures of horizontal and vertical environmental gradients. The percent cover of macroalgae, vascular plants, cyanobacteria, lichens, diatom film, sessile invertebrates, and substratum types were quantified during the summers of 2017 and 2018 at eleven intertidal locations in the bay and outer coast. Horizontal …

Development Of A Biomarker Panel For Identifying Stressed Marine Mammals, Laura Pujade

University of the Pacific Theses and Dissertations

Increasing anthropogenic disturbance in marine ecosystems such as fishing, oil-drilling, and noise pollution can have detrimental effects on the reproduction and survival of apex predators such as marine mammals. Stress activates the hypothalamic-pituitary-adrenal (HPA) axis, resulting in increased circulating glucocorticoid (GCs) hormones, which alter expression of target genes encoding metabolic enzymes and other mediators of stress. Prolonged HPA axis stimulation may increase catabolism of nutrient stores and suppress immune and reproductive functions, impacting the fitness of marine mammals. GCs measurements are used to identify wild animals experiencing stress. However, these measurements may not be sensitive enough to distinguish between an …