Marine Biology Commons^™

Global Priorities For Marine Biodiversity Conservation, Elizabeth R. Selig, Will R. Turner, Sebastian Troëng, Bryan P. Wallace, Kristin Kaschner, Ben G. Lascelles, Kent E. Carpenter, Russell A. Mittermeier

Biological Sciences Faculty Publications

In recent decades, many marine populations have experienced major declines in abundance, but we still know little about where management interventions may help protect the highest levels of marine biodiversity. We used modeled spatial distribution data for nearly 12,500 species to quantify global patterns of species richness and two measures of endemism. By combining these data with spatial information on cumulative human impacts, we identified priority areas where marine biodiversity is most and least impacted by human activities, both within Exclusive Economic Zones (EEZs) and Areas Beyond National Jurisdiction (ABNJ). Our analyses highlighted places that are both accepted priorities for …

The Impact Of Sea Surface Temperature On Outbreaks Of Acanthaster Planci On The Great Barrier Reef, Laura A. Grossman

Scripps Senior Theses

The causes of increasing outbreaks of Acanthaster planci on the Great Barrier Reef have been a point of hot debate in recent years. It is unknown whether the increased success is due to nutrient runoff, salinity levels, or a decrease in predation, among other possibilities. In this paper I argue that the primary influence on outbreak status is sea surface temperature. From existing literature, I demonstrate that sea surface temperature in the Great Barrier Reef has increased by 0.4°C per year over the past three decades. I attempt to tie this increase with an increase in frequency of A. planci …

Extinction Risk And Conservation Of The World's Sharks And Rays, Nicholas K. Dulvy, Sarah L. Fowler, John A. Musick, Rachel D. Cavanagh, Peter M. Kyne, Lucy R. Harrison, John K. Carlson, Lindsay N. K. Davidson, Sonja V. Fordham, Malcolm P. Francis, Caroline M. Pollock, Colin A. Simpfendorfer, George H. Burgess, Kent E. Carpenter, Leonard J. V. Compagno, David A. Ebert, Claudine Gibson, Michelle R. Heupel, Suzanne R. Livingstone, Jonnell C. Sanciangco, John D. Stevens, Sarah Valenti, William T. White

Biological Sciences Faculty Publications

The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes-sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other …

Developing Important Marine Mammal Area Criteria: Learning From Ecologically Or Biologically Significant Areas And Key Biodiversity Areas, Collenn M. Corrigan, Jeff A. Ardron, Mia T. Comeros-Raynal, Erich Hoyt, Giuseppe Notarbartolo Di Sciara, Kent E. Carpenter

Biological Sciences Faculty Publications

1. This paper explores how criteria to identify important marine mammal areas (IMMAs) could be developed, and nested in existing global criteria. This process would consider 134 species of marine mammals. 2. Particular attention is given to two suites of global criteria to identify areas important for the persistence of marine biodiversity: Ecologically or Biologically Significant Areas (EBSAs) developed through the Convention on Biological Diversity (CBD), and Key Biodiversity Areas (KBAs) in revision through the International Union for the Conservation of Nature (IUCN). They are seen as mutually complementary in the development of IMMAs. 3. The specificities necessary for identifying …

Oceanography, Geology, Biogeography, And Fisheries Of The Eastern Central Atlantic, Merete Tandstad, Ana Maria Caramelo, Fabio Carocci, Kent Carpenter, Jonnell C. Sanciangco

Biological Sciences Faculty Publications

[Introduction] This species identification guide focuses on the marine species occurring in the eastern Atlantic Ocean from Gibraltar in the north (36°00'N) to the middle of Namibia in the south (23°00'S) and westward to 30°00'W longitude (FAO Fishing Area 34) and to 20°00'W longitude (FAO Fishing Area 47) (Fig 1). Estuarine species, as well as species that only spend part of their life cycle in marine waters (anadromous and catadromous species) are also included.

The West African coast encompasses some of the most productive areas in the world, supporting important fishery resources and a unique diversity. Fisheries constitute an important …

Review Of Report On The “Status Of Nearshore Finfish Stocks In South-Western Western Australia: Australian Herring And Tailor”, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Estudios Científicos En El Estado De Hidalgo Y Zonas Aledañas, Volumen Ii, Griselda Pulido-Flores, Scott Monks

Zea E-Books Collection

Los 16 capítulos que conforman este libro son una contribución al conocimiento de la biodiversidad y conservación de los recursos naturales en el estado de Hidalgo, México.

Se aborda el derecho de propiedad intelectual en la biodiversidad, citando algunos ejemplos de México. Así mismo, se presenta un estudio de la biodiversidad y distribución de la herpetofauna en cuatro tipos de vegetación. Desde el punto de vista de la helmintología se presentan dos estudios de los helmintos parásitos de vertebrados silvestres; con nuevos registros de hospederos y localidades de algunas especies de helmintos para Hidalgo. También, se aborda el uso de …

Advocacy For Marine Management: Contributions To A Policy Advocacy Initiative In The Maldives, Neal Collins

Capstone Collection

On June 5, 2009 a 42-­‐km2 area of coral reef situated in the Alif Dhaalu (South Ari) atoll of the Republic of Maldives was designated the South Ari Atoll Marine Protected Area (S.A. MPA) due to a globally significant whale shark aggregation site. The whale shark is notorious for its gargantuan size and docile nature, which has led to a burgeoning tourist industry that gives people the opportunity to swim with the gentle giants in tropical sites such as the Maldives. The S.A. MPA receives tens of thousands of visitors a year that engage in whale shark excursions, however, there …

Aerobic Degradation Of Α-, Β-, Γ-Hexachlorocyclohexane By Narragansett Bay Bacterioplankton, Ian M. Rambo

Senior Honors Projects

Hexachlorocyclohexanes (HCHs) are a family of chlorinated organic compounds that were previously used as agricultural insecticides. HCHs are recognized as persistent organic pollutants due to their toxicity, recalcitrant properties, and tendency to bioaccumulate in food webs. Although HCH was first synthesized in 1825, its use was not widespread until the discovery of the insecticidal activity of the γ-HCH isomer in 1942. γ-HCH and its toxic waste isomers α-HCH and β-HCH were banned from production and use by the United Nations in 2009, yet these chemicals still present environmental problems due to their persistence in soils and surface waters. HCHs continue …

For The Birds, Milan Bull

Wrack Lines

A new column about shore birds, starting with piping plovers.

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

A Description Of Neoechinorhynchus (Neoechinorhynchus) Veropesoi N. Sp. (Acanthocephala: Neoechinorhynchidae) From The Intestine Of The Silver Croaker Fish Plagioscion Squamosissimus (Heckel, 1840) (Osteichthyes: Sciaenidae) Off The East Coast Of Brazil, Francisco Tiago De Vasconcelos Melo, P. A.F.B. Costa, E. G. Giese, Scott Lyell Gardner, J. N. Santos

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Plagioscion squamosissimus (Heckel, 1840) (Osteichthyes: Sciaenidae) is considered piscivorous and is a generalist species endemic to the Amazon region. This fish is an important part of the natural ecosystems in which it occurs and provides basic functional components in the food web. The genus Neoechinorhynchus Stiles & Hassall, 1905 is distributed worldwide and parasitizes fish and turtles, but there are few reports of parasites of this genus in South America, due to the high diversity of fish that can be found in this region. A new species of thorny-headed worm (Acanthocephala: Neoechinorhynchidae) is described from P. squamosissimus from Guajará Bay, …

Habitat Availability And Heterogeneity And The Indo-Pacific Warm Pool As Predictors Of Marine Species Richness In The Tropical Indo-Pacific, Jonnell C. Sanciangco, Kent E. Carpenter, Peter J. Etnoyer, Fabio Moretzsohn

Biological Sciences Faculty Publications

Range overlap patterns were observed in a dataset of 10,446 expert-derived marine species distribution maps, including 8,295 coastal fishes, 1,212 invertebrates (crustaceans and molluscs), 820 reef-building corals, 50 seagrasses, and 69 mangroves. Distributions of tropical Indo-Pacific shore fishes revealed a concentration of species richness in the northern apex and central region of the Coral Triangle epicenter of marine biodiversity. This pattern was supported by distributions of invertebrates and habitat-forming primary producers. Habitat availability, heterogeneity, and sea surface temperatures were highly correlated with species richness across spatial grains ranging from 23,000 to 5,100,000 km(2) with and without correction for autocorrelation. The …

Marine Fungi Of U.S. Gulf Of Mexico Barrier Island Beaches: Biodiversity And Sampling Strategy, Allison Kathleen Walker

Dissertations

Marine fungi are an important but often overlooked component of marine ecosystems. Primarily saprotrophic, they are vital to coastal nutrient cycling processes and food webs. However, basic marine fungal distribution data are lacking in many parts of the world, as is knowledge of the sampling intensity required to characterize the biodiversity of these communities. The roles of substrate, season and latitude in shaping intertidal ascomycete community structure were examined for the U.S. Gulf of Mexico, and the role of sampling frequency on species richness estimates was also addressed. Best sampling practices were developed and 750 collections of beach detritus, sand …

Ocean Governance: The New Zealand Dimension Full Report, Michael Vincent Mcginnis

Working Papers

The primary goal of this report is to provide interested members of the public and policymakers with a general overview and a description of the types of principles, planning tools, and policy instruments that can be used to strengthen and improve marine governance in New Zealand. As extractive uses (hydrocarbons and minerals, in particular) ramp up and others are explored and brought on line in the marine areas of New Zealand, the need will increase for a more integrative, ecosystem-based approach to marine governance.

This study is based on the following types of analysis:

• a review of the literature …

A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope

STAR Program Research Presentations

This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …

Using Stable Isotope Analysis To Study Zooplankton Trophic Ecology In San Francisco Estuary, Steven C. Westbrook, Julien Moderan, Wim Kimmerer

STAR Program Research Presentations

Zooplankton biomasses in estuaries are often high and represent an important food source for fish, like theendangered Delta Smelt. Human interferences (nitrates from crops, freshwater flow alteration, invasive species introduction…) have altered the structure of the San Francisco Estuary (SFE) ecosystem. We use stable isotope analysis to improve our knowledge of the planktonic food web in the SFE and gain insights into its evolution over the past decades. Every living thing has a specific isotopic signature. For example, in the plankton we study exists Carbon 13 and Carbon 12. Carbon 13 is different only because it has one extra neutron, …

Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen

STAR Program Research Presentations

Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …

Effects Of Pristane On Growth Of Pink Salmon (Oncorhynchus Gorbuscha), Brielle D. Kemis, Bonita Nelson

STAR Program Research Presentations

Pristane is a naturally occurring hydrocarbon that is generated by copepods in marine ecosystems. Organisms that eat copepods do not readily metabolize pristane, which causes it to accumulate throughout the marine food web. Understanding how pristane affects marine fish is essential because pristane is often used as a bioindicator in lab studies and may be influencing results in those studies. Also, this hydrocarbon may significantly reduce growth of marine fish in the wild. A previous study indicated that pristane is an appetite suppressant and growth retardant in fish. However, the study implemented a feeding regime with unnaturally high levels of …

Fish Assemblage Dynamics And Red Drum Habitat Selection In Bayou St. John And Associated Urban Waterways Located Within The City Of New Orleans, Louisiana, Patrick W. Smith Mr.

LSU New Orleans Theses and Dissertations

Bayou St. John (BSJ) and City Park Lakes and Lagoons (CPLL) are urban waterways in New Orleans, Louisiana. I studied habitat selection of red drum in BSJ, and fish assemblage change in BSJ and CPLL over 40 years. Temperature was found to be the best predictor of red drum habitat selection in Bayou St. John, while salinity and change in depth also were found to be good predictors for certain sites. Potential prey item abundance did not appear to influence habitat selection. Using data from 1971 – 2010, nearshore habitats in CPLL were affected by Hurricane Katrina, but have sense …

Increased Variability Of Microbial Communities In Restored Salt Marshes Nearly 30 Years After Tidal Flow Restoration, Anne E. Bernhard, David Marshall, Lazaros Yiannos

Biology Faculty Publications

We analyzed microbial diversity and community composition from four salt marsh sites that were impounded for 40–50 years and subsequently restored and four unimpounded sites in southeastern Connecticut over one growing season. Community composition and diversity were assessed by terminal restriction fragment length polymorphism (TRFLP) and sequence analysis of 16S ribosomal RNA (rRNA) genes. Our results indicated diverse communities, with sequences representing 14 different bacterial divisions. Proteobacteria, Bacteroidetes, and Planctomycetes dominated clone libraries from both restored and unimpounded sites. Multivariate analysis of the TRFLP data suggest significant site, sample date, and restoration status effects, but the exact causes of these …

Despite Losing Its Mittens, A Chinese Mitten Crab Finds Its Way To Connecticut, Nancy C. Balcom

Wrack Lines

A new invasive species for Connecticut: the Chinese mitten crab. Only one of this invasive crustacean species was spotted, but there will be more on the way.

Extinction Risk And Bottlenecks In The Conservation Of Charismatic Marine Species, Loren Mcclenachan, Andrew B. Cooper, Kent E. Carpenter, Nicholas K. Dulvy

Biological Sciences Faculty Publications

The oceans face a biodiversity crisis, but the degree and scale of extinction risk remains poorly characterized. Charismatic species are most likely to gar- ner greatest support for conservation and thus provide a best-case scenario of the status of marine biodiversity. We summarize extinction risk and diagnose impediments to successful conservation for 1,568 species in 16 families of marine animals in the movie Finding Nemo. Sixteen percent (12–34%) of those that have been evaluated are threatened, ranging from 9% (7–28%) of bony fishes to 100% (83–100%) of marine turtles. A lack of scientific knowledge impedes analysis of threat status …

Marine Invertebrate Life, Rachael Kemp, Howard Peters, Louise Allcock, Kent Carpenter, David Obura, Beth Polidoro, Nadia Richman

Biological Sciences Faculty Publications

Marine invertebrates are key components of all marine ecosystems, and play critical roles in essential ecological processes, food provision for humans, and diverse and productive food webs. Despite their importance, the vast majority of marine invertebrates are very poorly known. Research has tended to focus on the larger, more conspicuous and economically important species. Humans have long exploited the margins of pelagic ecosystems, but over the past five decades, rapid technological advancement has allowed more routine access to deeper waters [1]. Increasing exploration into the oceans that cover 70% of the world's surface has led to rapid advancement of species …

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

Thermal Tolerance Of Age-0 Gulf Of Mexico Striped Bass (Morone Saxatilis): Ontogenetic And Genetic Effects, Corey Robert Anderson

Master's Theses

Striped bass, Morone saxatilis, were historically abundant in the Gulf of Mexico region but were largely extirpated from most Gulf rivers by the early 1960s. Since 1967 hatchery stocking has supported populations in Mississippi rivers and to date there is no evidence of natural reproduction. Intolerance of striped bass to high water temperature is a potential factor negatively impacting Gulf striped bass survival and reproductive fitness, and may be a limiting factor to reintroduction of the species in Mississippi. This work contributed to restoration efforts by establishing molecular tools necessary for genetic monitoring of striped bass restoration, and evaluating …

Phylogeography Of The Reef Fish Cephalopholis Argus(Epinephelidae) Indicates Pleistocene Isolation Across The Indo-Pacific Barrier With Contemporary Overlap In The Coral Triangle, Michelle R. Gaither, Brian W. Bowen, Tiana-Rae Bordenave, Luiz A. Rocha, Stephen J. Newman, Juan A. Gomez, Lynne Van Herwerden, Matthew T. Craig

Fisheries Research Articles

Background

The Coral Triangle (CT), bounded by the Philippines, the Malay Peninsula, and New Guinea, is the epicenter of marine biodiversity. Hypotheses that explain the source of this rich biodiversity include 1) the center of origin, 2) the center of accumulation, and 3) the region of overlap. Here we contribute to the debate with a phylogeographic survey of a widely distributed reef fish, the Peacock Grouper (Cephalopholis argus; Epinephelidae) at 21 locations (N = 550) using DNA sequence data from mtDNA cytochrome b and two nuclear introns (gonadotropin-releasing hormone and S7 ribosomal protein).

Results

Population structure was significant …

Comparative Phylogeography Of The Coral Triangle And Implications For Marine Management, Kent E. Carpenter, Paul H. Barber, Eric D. Crandall, Maria Carmen A. Ablan-Lagman, Ambariyanto Ambariyanto, Gusti Ngurah Mahardika, B. Mabel Manjaji-Matsumoto, Marie Antonette Junio-Menez, Mudjekeewis D. Santos, Craig J. Starger, Abdul Hamid A. Toha

Biological Sciences Faculty Publications

Extreme concentration of marine biodiversity and exploitation of marine resources in the Coral Triangle pose challenges to biogeographers and resource managers. Comparative phylogeography provides a powerful tool to test biogeographic hypotheses evoked to explain species richness in the Coral Triangle. It can also be used to delineate management units for marine resources. After about a decade of phylogeographical studies, patterns for theCoral Triangle are emerging. Broad connectivity in some species support the notion that larvae have maintained gene flow among distant populations for long periods. Other phylogeographic patterns suggest vicariant events resulting from Pleistocene sea level fluctuations, which have, at …

Conservation Status Of Marine Biodiversity In Oceania: An Analysis Of Marine Species On The Iucn Red List Of Threatened Species, Beth A. Polidoro, Cristiane T. Elfes, Jonnell C. Sanciangco, Helen Pippard, Kent E. Carpenter

Biological Sciences Faculty Publications

Given the economic and cultural dependence on the marine environment in Oceania and a rapidly expanding human population, many marine species populations are in decline and may be vulnerable to extinction from a number of local and regional threats. IUCN Red List assessments, a widely used system for quantifying threats to species and assessing species extinction risk, have been completed for 1190 marine species in Oceania to date, including all known species of corals, mangroves, seagrasses, sea snakes, marine mammals, sea birds, sea turtles, sharks, and rays present in Oceania, plus all species in five important perciformfish groups. Many of …

Resource Assessment Framework (Raf) For Finfish Resources In Western Australia, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.