Marine Biology Commons^™

Estimation Of Effective Number Of Breeders And Effective Population Size In An Abundant And Heavily Exploited Marine Teleost, Andrea Bertram, Justin Bell, Chris Brauer, David Fairclough, Paul Hamer, Jonathan Sandoval-Castillo, Maren Wellenreuther, Luciano B. Beheregaray

Fisheries Research Articles

Obtaining reliable estimates of the effective number of breeders (Nb) and generational effective population size (Ne) for fishery-important species is challenging because they are often iteroparous and highly abundant, which can lead to bias and imprecision. However, recent advances in understanding of these parameters, as well as the development of bias correction methods, have improved the capacity to generate reliable estimates. We utilized samples of both single-cohort young of the year and mixed-age adults from two geographically and genetically isolated stocks of the Australasian snapper (Chrysophrys auratus) to investigate the feasibility of generating reliable Nb and Ne estimates for a …

Microplastic Accumulation In The Marsh Periwinkle (Littoraria Irrorata), Sarah Keaton, Hannah Lukhard, Eli Windy, Manar Hasan

DePaul Discoveries

Contamination of oceans by microplastics (mm) currently poses a major threat to aquatic and terrestrial ecosystems worldwide. Recent attention towards this issue has raised questions about the extent to which microplastics have accumulated in the environment, and has led to an increase in studies on the effects of microplastics in various organisms. However, levels of contamination in protected natural areas are still largely unexplored, yet can offer an important empirical perspective on the issue. In addition, little is known about the potential effects of microplastics on behavior in the field. This research was conducted within the protected ACE Basin National …

Using Unmanned Aircraft Systems (Uas) To Assess Body Condition Of Common Bottlenose Dolphins (Tursiops Truncatus Truncatus) In The Indian River Lagoon, Florida, Jessica Jane Provenzano

Theses and Dissertations

Common bottlenose dolphins (Tursiops truncatus truncatus) in the Indian River Lagoon (IRL) have experienced four Unusual Mortality Events (UMEs). This stock is considered immunocompromised and is routinely subjected to persistent anthropogenic stressors such as fishing gear entanglement, vessel strikes, contaminants, and harmful algal blooms. Previous body condition assessments of this stock have involved invasive capture-release examinations or subjective methods using lateral body images. To improve precision, we investigated the use of photogrammetry data collected from noninvasive unmanned aircraft systems (UAS) combined with models developed from capture-release data to estimate morphometric parameters and subsequently determine the body condition of …

Concepts In Animal Parasitology, Scott L. Gardner, Sue Ann Gardner

Zea E-Books Collection

Note that this version of the textbook has been superceded by the one updated in 2026, available at the UNL Pressbooks site.

The hard copy version that is for sale at lulu.com is the old version.

"This is a textbook covering concepts in animal parasitology. It is meant to be used by students, teachers, professors, researchers, and members of the public who are interested in learning about animal parasite biology, systematics, taxonomy, zoogeography, and ecology. The primary intended audience is upper-level undergraduate or graduate university students who have knowledge of basic biology and, particularly, basic animal biology. (863 pages, …

Fisheries Occasional Publication No.147 - Aquaculture Development Zones – Policy Position Relating To Permitted Alternative Species, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

The purpose of this policy is to set out considerations relevant to the assessment of aquaculture proposals within Aquaculture Development Zones (ADZ) for species distinct from the group of species for which the ADZ was initially established (Alternative Species).

Impacts Of Hematodinium Infection In A Seasonal Population Model Of The Chesapeake Bay Blue Crab, Gwendolyn R. Sargent, Romuald Lipcius, Leah Shaw, Junping Shi, Jeffrey D. Shields

Biology and Medicine Through Mathematics Conference

No abstract provided.

Fiddler Crab Gut Microbiomes As An Indicator For Eutrophication Due To Waste-Water Contamination In Estuaries, Madison L. Geraci

Honors Theses

Estuaries are unique biogeochemical zones in coastal systems that provide a myriad of ecological functions: providing habitat for critically important fishery species, diverse species of plants and animals, and contributing to nutrient cycling. Estuaries are vulnerable to anthropogenic stressors as they are intersections between marine and terrestrial communities and are often the hotspot of coastal development and activity. Estuarine sediments act as repositories for anthropogenic contaminants, including excess nutrient runoffs and waste-water pollution that can cause states of eutrophication. Microorganisms are sensitive to these environmental changes, presenting a unique opportunity of being useful bioindicators of environmental stress. Isolating microorganisms from …

West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

Phenotypic Plasticity In Pigmentation: Investigating Coloration Patterns In Anablepsoides Hartii Population Responses To Environmental Variation, Jasdeep Kaur

2024 Spring Honors Capstone Projects - Archive

In this study, we investigated the color-changing capabilities of Trinidadian killifish, Anablepsoides hartii, through exposure to varied color conditions over defined periods of time. Our experiment aims to understand adaptive responses when killifish are subjected to different color backgrounds, exploring their mechanisms to change color. By subjecting the species to different environmental color variations, we sought to discern color change patterns, which could indicate adaptive responses related to camouflage, stress, behavior clues, and physiological adjustments. Carefully controlling environmental factors, we monitored and documented the fishes’ color changes, aiming to provide insights into the interplay between fish’s developmental plasticity and its …

Response Of Fish Assemblages To Increased Connectivity And Habitat Restoration In Bayou St. John, A Degraded Waterway In New Orleans, La, Alia Jones

LSU New Orleans Theses and Dissertations

Bayou St. John is a degraded waterway located within the City of New Orleans. The Bayou, which is disconnected from Lake Pontchartrain by floodgates, has undergone restoration efforts to improve connectivity through frequent floodgate openings and marsh habitat restoration outside of the floodgates. To assess possible responses of local fish assemblages to these restoration efforts, I analyzed long-term fish assemblage data from three sites located inside of the floodgates and one site located at the restored marsh outside of the floodgates. Two sites inside of the floodgates experienced significant changes in assemblages between the pre-opening period (2006-2012) and post-opening period …

An Examination Of The Eastern Nebraska And Western Iowa Flash Flood Event Of 6-7 August 1999, Catherine M. Zapotocny

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

Flash flooding occurs each summer in eastern Nebraska and western Iowa. While 10-inch rains are extraordinary, it is not uncommon to have at least one excessive rain event during the annual convective season. A significant flash flood occurred in east central Nebraska and western Iowa the night of August 6, 1999 into the morning of August 7, 1999. Antecedent hydrologic conditions limited the loss of life, however considerable property damage resulted as the heavy rain fell over the urbanized areas in eastern Nebraska and western Iowa.

Several flash flood ingredients came together over the area. These meteorological factors are typical …

Trophic Ecology Of Black Swallowers (Scombriformes: Chiasmodontidae: Chiasmodon) In The Deep-Pelagic Gulf Of Mexico, Travis J. Kirk

All HCAS Student Capstones, Theses, and Dissertations

The ecology of deep-pelagic predatory fishes remains poorly understood despite their importance as ecosystem regulators and energy transfer vectors. This study investigated the trophic ecology of three species of the predatory fish genus Chiasmodon (“black swallowers”) in the Gulf of Mexico, a region that serves as an analog for the global low-latitude deep pelagial, the world’s largest cumulative ecosystem. Foraging habits (e.g., selectivity, chronology, daily ration) of an “advanced” evolutionary fish in a system that is otherwise dominated by basal fish taxa, were quantitatively estimated via high-resolution stomach content analysis. A quantitative dataset of both predator and prey abundance, the …

Microplastic Quantification On The Effect Of Endoparasite Communities In Florida Seabirds, Sarah N. Prieto

All HCAS Student Capstones, Theses, and Dissertations

Microplastics are being studied in a variety of different projects to better understand their impact and threat to wildlife species. Although there is an understanding that microplastics are affecting our wildlife, there are still questions about how coastal seabirds come to ingest them and how the ingestion is altering critical biological processes, such as that for endoparasite communities. This project aims to determine a better understanding of two main objectives: assessment of the presence of secondary ingestion of microplastics in coastal seabirds due to the fish species they prey on and relationship between microplastics and endoparasite communities' structure and state …

Spotted Eagle Ray (Aetobatus Narinari) Jaw, Lili M. Mcelhill, Alison G. Novara, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Sharpnose (Rhizoprionodon Terraenovae) Jaw, Juliana N. Ottens-Rivera, Fiona Smith, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Jaw from 76cm total length (TL) Rhizoprionodon genus (Sharpnose), collected from Anglers Bait & Tackle on Feb 5th, 2024, by Juliana Ottens-Rivera

Genomic Population Structure Of Great Hammerhead Sharks (Sphyrna Mokarran) Across The Indo-Pacific, Naomi L. Brunjes, Samuel M. Williams, Alexis L. Levengood, Matt K. Broadhurst, Vincent Raoult, Alastair V. Harry, Matias Braccini, Madeline E. Green, Julia L. Y. Spaet, Michael J. Travers, Bonnie J. Holmes

Fisheries Research Articles

Context

Currently, little information exists describing the population structure of great hammerhead sharks (Sphyrna mokarran) in Australian waters. Aims

This study used single nucleotide polymorphisms to investigate fine-scale population structure in S. mokarran across the Indo-Pacific. Methods

DNA was extracted from 235 individuals across six Australian locations and a Red Sea outgroup. Population parameters were calculated and visualised to test structuring across locations. Key results

No fine-scale population structuring was observed for S. mokarran across the Indo-Pacific. However, population structuring occurred for all Australian locations when compared to the Red Sea outgroup. Conclusions

Findings suggest a single stock …

The Social And Economic Dimensions Of One Of The World’S Longest-Operating Shark Fisheries, Matias Braccini, Maddison Watt, Clinton Syers, Nick Blay, Matthew Navarro, Michael Burton

Fisheries Research Articles

Context

Social and economic information is limited for coastal commercial and recreational fisheries, particularly shark fisheries, which are perceived as unsustainable and as targeting sharks for fins.

Aims

To characterise the social and economic dimensions of one of the world’s few long-standing sustainable shark fisheries.

Methods

We reviewed historic data and surveyed stakeholders to understand the economic and social dimensions of the shark fishery currently operating in Western Australia.

Key results

Since the fishery’s historic peak, there has been a substantial reduction in the number of operating vessels and ports due to management intervention. For the vessels that have remained, …

Assessing The Impact Of Climate Change On Harbor Seals: Haul-Out Patterns In Iceland Using Cmip6 Projections, Colin Lau

Independent Study Project (ISP) Collection

Harbor seals (Phoca vitulina) are known to exhibit a preference for specific environmental and weather conditions when hauling out, particularly during the pupping and molting cycles during summer. Climate change is projected to have a significant impact on the haul-out patterns and site conditions of harbor seals in Iceland, which could further diminish their dwindling population. A comprehensive literature review was conducted to identify and discuss the environmental variables that can affect haul-out probability. Among them, surface wind speed and air temperature are reported to have the biggest influence on harbor seal haul-out numbers between May and August. Climate projections …

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …

Time Series Modeling To Ascertain Age In Fisheries Management, Kathleen Sue Kirch

OES Theses and Dissertations

The ability to assign accurate ages of fish is important to fisheries management. Accurate ageing allows for the most reliable age-based models to be used to support sustainability and maximize economic benefit. Structures used to age include bones, scales, and most commonly ear bones (otoliths). Assigning age relies on validating putative annual marks by evaluating accretional material laid down in patterns in fish otoliths, typically by marginal increment analysis. These patterns often take the shape of a sawtooth wave with an abrupt drop in accretion yearly to form an annual band and are typically validated qualitatively. Researchers have shown keen …

Ecological Risk Assessment For The Western Australian Large Pelagic Fish Resource, Kimberley A. Smith, Paul Lewis, Kendra Travaille, Brett M. Crisafulli, Liv Rynvis, Gabby E. Mitsopoulos

Fisheries Research Reports

In December 2023, the Department of Primary Industries and Regional Development (DPIRD, the Department) convened an ecological risk assessment (ERA) of the fisheries that access the Statewide Large Pelagic Fish Resource (Resource). This Resource comprises a range of tropical and temperate species including mackerels, billfish, kingfish, cobia, mahi mahi and tunas. This document contains the background information used to support the ERA risk scoring process, scoring from the workshop and a summary of the workshop discussions that were relevant to the risk scoring. This includes an overview of Western Australian commercial fisheries that access the Resource, with a focus on …

Ecological Risk Assessment For The Western Australian Cephalopod Resource, Cameron J. Desfosses, Kimberley A. Smith, Lachlan W.S. Strain, Dave Murphy, Keyley Hogan-West, Daniel Yeoh, Shannon Burchert, Linda Wiberg, Bec Oliver, Brett M. Crisafulli, Gabby E. Mitsopoulos

Fisheries Research Reports

On 27 October 2023, the Department of Primary Industries and Regional Development (DPIRD, Department) convened an ecological risk assessment (ERA) of the fisheries that access the statewide Cephalopod Resource (Resource), which comprises a range of octopus, squid and cuttlefish species. This document contains the background information used to support the ERA risk scoring process, and a summary of the workshop discussions that were relevant to the risk scoring. The background information includes an overview of Western Australian commercial fisheries that access the Resource, focusing primarily on the Octopus Interim Managed Fishery (OIMF), Cockburn Sound Line and Pot Managed Fishery (CSLPMF), …

Variations In Life-History Traits In Exploited And Unexploited Populations Of Perth Herring (Nematalosa Vlaminghi): Evidence For Density-Dependent Growth?, Kimberley A. Smith, Sybrand Alexander Hesp, Peter Graham Coulson

Fisheries Research Articles

Results supported the hypothesis of faster growth in exploited populations because of density-dependent processes. Environmental factors may also have contributed to trait differences between populations.

Long Term Sustainable Use Of Demersal Gillnet And Demersal Longline In Western Australia’S Temperate Shark Fisheries - Fisheries Research Report 340, Matias Braccini, Jack Parker, Daniela Waltrick, Maddison Watt, Nick Blay, Clinton Syers

Fisheries Research Reports

The Temperate Demersal Gillnet and Demersal Longline Fisheries (TDGDLF) are one of the main commercial shark fisheries in Australia. Most fishers in the TDGDLF use demersal gillnets to target sharks with scalefish taken in smaller amounts. Demersal longlines are also permitted but are not widely used. Demersal gillnets are size selective, but they do not necessarily discriminate among species, catching target and non-target species.

The Western Australian Fishing Industry Council (WAFIC) received funding as part of the Australian Government’s Our Marine Parks Grants Program to undertake research on the TDGDLF. This project was administered under the direction of a steering …

Animal Conservation In St. Louis, Kate O'Sullivan

Undergraduate Research Symposium

St. Louis has a multitude of organizations involved in the natural sciences. But how many of them actually contribute towards animal conservation? The St. Louis Zoo is an organization that focuses a lot of its effort on presentation, so how does that impact the funds that go towards actually saving the animals? I plan to dive into the different animal-based organizations in St. Louis and its surrounding areas, as well as discuss the positives and negatives of each organization. Furthermore, I will provide examples from several sources that I have been reviewing all year to support my claims. I plan …

Parental Environnement Influences Offspring Gene Expression In The Olympia Oyster, Ostrea Lurida., Mark S. Yeats

LSU Master's Theses

The Olympia Oyster is the only native oyster species on the Pacific coast of North America. Seasonality in water temperatures across this threatened species’ broad and fragmented range has been linked to its development, reproductive timing, reproductive activity, growth, and survival rates. Recent evidence suggests parental environments can have carry-over effects on larval growth and respiration rates in response to temperature. In this study, we utilized transcriptomic methods to identify the underlying mechanisms of this cross-generation plasticity. Sequence libraries of adult ctenidia tissue and pooled larval replicates were extracted and spawned from hatchery raised oysters of the same parentage immediately …

Puerulus Settlement Forecasting In A Harvest Strategy Evaluation Of The Rock Lobster Fishery In South Australia, Richard Mcgarvey, Adrian Linnane, John E. Feenstra, Janet M. Matthews, Lachlan J. Mcleay, Annabel Jones, Kyriakos Toumazos, Simon De Lestang

Fisheries Research Articles

Harvest strategies are utilised in the management of fishery resources globally. Critical to their success is harvest strategy evaluation, whereby future performance is assessed through projection modelling. Using the observed relationship between a puerulus settlement index and model-estimated recruitment, we evaluated a southern rock lobster (Jasus edwardsii) harvest strategy in South Australia. Short-to-medium puerulus settlement recruitment forecasting was incorporated into future projections of catch, catch per unit effort, and percent unexploited egg production (%UEP) during 2019–2022. Observed values of indicators that closely aligned with projected outputs indicated that puerulus forecasting underpinned reliable evaluation of future fishery performance. A …

A Preliminary Investigation Of Adherence To Shell Length Regulations And Adaptive Capacity Of The Turneffe Atoll Queen Conch (Aliger Gigas) Fishery, Belize, Elsa M. K. Brenner, Vincent Sollitto, Vincent Baribeau, Rebecca Branconi, Paul Simonin

Gulf and Caribbean Research

No abstract provided.

Characterizing The Habitat Use Of Pacific Coast Feeding Group Gray Whales (Eschrichtius Robustus) And The Spatial And Temporal Variability Of Their Benthic And Planktonic Invertebrate Prey In Northern California, Robyn E. Norman

Cal Poly Humboldt theses and projects

As opportunistic foragers, the Eastern North Pacific population (~20,000) of gray whales (Eschrichtius robustus) feed on diverse benthic and planktonic invertebrates in northern Alaska foraging grounds before they undertake one of the largest yearly migrations of any mammal to breed in Baja California, Mexico. While most of the population travels to the summer foraging grounds in Alaska, a sub-group of whales (~230) called the Pacific Coast Feeding Group (PCFG) summer between British Columbia, Canada, and northern California. The diet of PCFG whales typically includes high-density and/or high-caloric prey items like mysids and diverse species of amphipods, yet a …

Studying Redtail And Silver Surfperch In Sandy Beach Surf Zones With Mpas In Humboldt County, California, Usa, Noah G. Angell

Cal Poly Humboldt theses and projects

The sandy beach surf zone (SBSZ) represents an ecologically, economically, and culturally important marine habitat around the world. Despite its significance, the SBSZ has been historically underrepresented in marine and coastal ecology research. This in turn has caused many inshore marine species that prefer this habitat to be largely ignored. Two particular species, the Redtail surfperch Amphistichus rhodoterus and the Silver surfperch Hyperprosopon ellipticum, have not been well studied in the PNW region . There are merely three studies conducted on the Redtail surfperch in the Pacific Northwest region and the Silver surfperch has received even less research attention with …