Molecular Genetics Commons^™

Phylogenetic Relationships Of African Microhylid Frogs Inferred From Dna Sequences Of Mitochondrial 12s And 16s Rrna Genes, Simon P. Loader, David J. Gower, Kim M. Howell, Nike Doggart, Mark-Oliver Rödel, Barry T. Clarke, Rafael O. De Sá, Bernard L. Cohen, Mark Wilkinson

Biology Faculty Publications

The phylogenetic relationships of microhylid frogs are poorly understood. The first molecular phylogeny for continental African microhylids is presented, including representatives of all subfamilies, six of the eight genera, and the enigmatic hemisotid Hemisus. Mitochondrial 12S and 16S rRNA sequence data were analysed using parsimony, likelihood and Bayesian methods. Analyses of the data are consistent with the monophyly of all sampled subfamilies and genera. Hemisus does not nest within either brevicipitines or non-brevicipitines. It is possibly the sister group to brevicipitines, in which case brevicipitines might not be microhylids. Phrynomantis and Hoplophryne potentially group with non-African, non-brevicipitine microhylids, in …

Phylogenetic Signal And The Utility Of 12s And 16s Mtdna In Frog Phylogeny, S. Hertwig, Rafael O. De Sá, A. Haas

Biology Faculty Publications

Genes selected for a phylogenetic study need to contain conserved information that reflects the phylogenetic history at the specific taxonomic level of interest. Mitochondrial ribosomal genes have been used for a wide range of phylogenetic questions in general and in anuran systematics in particular. We checked the plausibility of phylogenetic reconstructions in anurans that were built from commonly used 12S and 16S rRNA gene sequences. For up to 27 species arranged in taxon sets of graded inclusiveness, we inferred phylogenetic hypotheses based on different apriori decisions, i.e. choice of alignment method and alignment parameters, including/excluding variable sites, choice of reconstruction …

A Cytochrome-B Perspective On Passerina Bunting Relationships, John Klicka, Adam J. Fry, Robert M. Zink, Christopher W. Thompson

Ornithology Program (HRC)

We sequenced the complete mitochondrial cytochrome-b gene (1,143 nucleotides) for representatives of each species in the cardinalid genera Passerina (6 species), Guiraca (1 species), and Cyanocompsa (3 species), and used a variety of phylogenetic methods to address relationships within and among genera. We determined that Passerina, as presently recognized, is paraphyletic. Lazuli Bunting (P. amoena) is sister to the much larger Blue Grosbeak (Guiraca caerulea). Indigo Bunting (P. cyanea) and Lazuli Bunting are not sister taxa as generally thought. In all weighted parsimony trees and for the gamma-corrected HKY tree, Indigo Bunting is …

New World Nine-Primaried Oscine Relationships: Constructing A Molecular Framework, John Klicka, Kevin P. Johnson, Scott M. Lanyon

Ornithology Program (HRC)

Historically, a paucity of comparative morphological characters has led to much debate regarding relationships within and among the major lineages of New World nine-primaried oscines. More recently, DNA-DNA hybridization studies have provided novel and testable hypotheses of relationships, although no consensus has been reached. For 40 songbird taxa, we obtained 1,929 base pairs (bp) of DNA sequence from the mitochondrial cytochrome-b (894 bp) and NADH dehydrogenase subunit 2 (1,035 bp) genes. Phylogenetic analyses confirm the monophyly of this assemblage as traditionally defined. The lineages delineated historically on morphological grounds are retained; finches (Fringillinae) are sister to a well-supported clade …

Evolutionary Patterns Of Morphometrics, Allozymes And Mitochondrial Dna In Thrashers (Genus Toxostoma), Robert M. Zink, Donna L. Dittmann, John Klicka, Rachelle C. Blackwell-Rago

Ornithology Program (HRC)

We examined patterns of variation in skeletal morphometrics (29 characters), allozymes (34 loci), mitochondrial DNA (mtDNA) restriction sites (n = 74) and fragments (n = 395), and mtDNA sequences (1,739 bp from cytochrome b, ND2, ND6, and the control region) among all species of Toxostoma. The phenetic pattern of variation in skeletal morphometrics generally matched traditional taxonomic groupings (based on plumage patterns) with the exceptions of T. redivivum, which because of its large size clusters outside of its proper evolutionary group (lecontei), and T. occelatum, which did not cluster with T. curvirostre. Skull characters contributed highly to species discrimination, suggesting …

Evidence Supporting The Recent Origin And Species Status Of The Timberline Sparrow, John Klicka, Robert M. Zink, Jon C. Barlow, W. Bruce Mcgillivray, Terry J. Doyle

Ornithology Program (HRC)

The Timberline Sparrow (Spizella taverneri), although originally described as a species, is currently classified as a subspecies of the more widespread Brewer's Sparrow (S. breweri). We investigated the taxonomic status and recent evolutionary history of these species by comparison of both morphological and molecular characters. Morphometric comparisons using 6 external and 18 skeletal measurements show that S. taverneri specimens from two widely separated populations (Yukon and southwestern Alberta, Canada) are indistinguishable with respect to size yet are significantly larger (by 3%) than representatives of several breweri populations. Analysis of 1,413 base pairs of mitochondrial DNA (mtDNA) for 10 breweri and …

Freshwater Fishes Of Shipstern Nature Reserve, Caspar F. A. Bijleveld

Physiology Faculty Research Publications

A survey of fishes in and around Shipstern Nature Reserve in Northern Belize, Central America, was carried out over a period of eight months, from February to September 1990. Its purpose was to establish a preliminary list of the fishes of Shipstern Nature Reserve, including descriptions, distribution and collecting data and additionally to describe some of the habitats in which the fishes were found. This study focuses on fishes considered to be freshwater species. These occurred for the greater part in brackish habitats. Nevertheless, a few fish considered as marine species were caught in the waters of the reserve and …

Caribbean Island Zoogeography: A New Approach Using Mitochondrial Dna To Study Neotropical Bats, Carleton J. Phillips, Dorothy E. Pumo, Hugh H. Genoways, Phillip E. Ray

University of Nebraska State Museum: Mammalogy Papers

Genetic analysis of animal mitochondrial DNA is a new and valuable addition to the battery of techniques available to zoogeographers. This paper describes characteristics of mitochondrial DNA (mtDNA) that make it applicable for the study of island zoogeography.

Some traditional zoogeographic questions are examined using mtDNA from the Neotropical fruit bat, Artibeus jamaicensis. The specific questions are: 1) To what extent are island populations isolated (that is, does interbreeding occur between the insular subspecies)? 2) Can a single founding female account for the mitochondrial genomes on specific islands in the Antilles? 3) Is there a correlation between the genomic …

Mitochondrial Dna Polymorphism In Three Antillean Island Populations Of The Fruit Bat, Artibeus Jamaicensis, Dorothy E. Pumo, Everett Z. Goldin, Beth Elliot, Carleton J. Phillips, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

The Neotropical fruit bat, Artibeus jamaicensis, occurs throughout Latin America and on many islands in the Caribbean. Populations from Jamaica (in the Greater Antilles) to Barbados (in the Lesser Antilles) have been classified as a subspecies (A. j. jamaicensisi separate from that on the Lesser Antillean island of St. Vincent (A. j. schwartzi). Mitochondrial DNA (mtDNA) was isolated from 54 individuals collected on these islands, analyzed by digestion with restriction endonucleases, and the restriction sites were mapped. Three different mtDNA genotypes (16,000 ± 200 bp) were identified: J-1 (16 animals from Jamaica, one from St. Vincent, …

Karyotypic Analysis Of Five Rodents And A Marsupial From Belize, Central America, David W. Burton, John W. Bickham, Hugh H. Genoways, Timothy J. Mccarthy

University of Nebraska State Museum: Mammalogy Papers

Karyotypes and chromosomal banding patterns of six species of small mammals from Belize are presented and discussed in light of relevant data in the literature. Individuals of Heteromys desmarestianus had FN values of 72, which differs from previous reports. G-bands were obtained and compared to fluorescent bands (DAPI) and with the location of NOR sites. The karyotypes of Peromyscus mexicanus, Sigmodon hispidus, Oryzomys couesi, and Ototylomys phyllotis are identical to the karyotypes for these species described in the literature. Active NORs were located on four pairs of chromosomes in O. phyllotis and fluorescent bands obtained with the …