Open Access. Powered by Scholars. Published by Universities.®
- Discipline
-
- Animal Sciences (555)
- Meat Science (445)
- Medicine and Health Sciences (371)
- Microbiology (293)
- Medical Sciences (281)
-
- Cell and Developmental Biology (270)
- Virology (269)
- Medical Specialties (267)
- Medical Pathology (265)
- Biological Phenomena, Cell Phenomena, and Immunity (264)
- Infectious Disease (263)
- Medical Immunology (263)
- Genetics (150)
- Plant Sciences (127)
- Ecology and Evolutionary Biology (99)
- Entomology (92)
- Biology (79)
- Genomics (76)
- Plant Pathology (61)
- Agriculture (57)
- Organisms (57)
- Molecular Genetics (51)
- Viruses (49)
- Agronomy and Crop Sciences (46)
- Behavior and Ethology (42)
- Biodiversity (36)
- Plant Biology (36)
- Bioinformatics (35)
- Keyword
-
- Beef cattle (39)
- Sheep (16)
- Cattle (14)
- Swine (13)
- Adaptation (12)
-
- Evolution (12)
- Genomic prediction (12)
- Heat stress (12)
- Genetics (11)
- Hemoglobin (11)
- Speciation (11)
- GWAS (10)
- Genomics (10)
- Bioinformatics (9)
- DNA (9)
- Feedlot (9)
- Gene duplication (9)
- Growth (9)
- Methane (9)
- Pigs (9)
- Sexual selection (9)
- Vaccine (9)
- Chloroviruses (8)
- HIV (8)
- Phylogeny (8)
- Adaptive fetal programming (7)
- Bovine (7)
- Corpus luteum (7)
- Gene expression (7)
- Gene family evolution (7)
- Publication Year
- Publication
-
- Department of Animal Science: Faculty Publications (460)
- Nebraska Center for Virology: Faculty Publications (264)
- Jay F. Storz Publications (55)
- James Van Etten Publications (48)
- Eileen Hebets Publications (41)
-
- School of Biological Sciences: Faculty Publications (29)
- Department of Entomology: Faculty Publications (27)
- Department of Food Science and Technology: Faculty Publications (24)
- School of Biological Sciences: Dissertations, Theses, and Student Research (22)
- Department of Agronomy and Horticulture: Faculty Publications (20)
- Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research (17)
- Department of Psychology: Faculty Publications (16)
- Lawrence G. Harshman Publications (14)
- Department of Animal Science: Dissertations, Theses, and Student Research (13)
- UCARE: Research Products (13)
- University of Nebraska State Museum: Mammalogy Papers (12)
- Harold W. Manter Laboratory of Parasitology: Library Materials (11)
- Honors Program: Senior Projects (Public) (10)
- United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications (9)
- Papers in Genetics (7)
- Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023– (6)
- School of Computing: Faculty Publications (5)
- Transactions of the Nebraska Academy of Sciences and Affiliated Societies (4)
- Brigitte Tenhumberg Papers (3)
- Department of Entomology: Dissertations, Theses, and Student Research (3)
- Department of Food Science and Technology: Dissertations, Theses, and Student Research (3)
- Department of Plant Pathology: Faculty Publications (3)
- Department of Special Education and Communication Disorders: Faculty Publications (3)
- Diana Pilson Publications (3)
- School of Computing: Conference and Workshop Papers (3)
Articles 301 - 330 of 1202
Full-Text Articles in Genetics and Genomics
Characterization Of A Species E Adenovirus Vector As A Zika Virus Vaccine, Brianna L. Bullard, Brigette N. Corder, David N. Gordon, Theodore C. Pierson, Eric A. Weaver
Characterization Of A Species E Adenovirus Vector As A Zika Virus Vaccine, Brianna L. Bullard, Brigette N. Corder, David N. Gordon, Theodore C. Pierson, Eric A. Weaver
Nebraska Center for Virology: Faculty Publications
The development of a safe and efficacious Zika virus (ZIKV) vaccine remains a global health priority. In our previous work, we developed an Adenovirus vectored ZIKV vaccine using a low-seroprevalent human Adenovirus type 4 (Ad4-prM-E) and compared it to an Ad5 vector (Ad5-prM-E). We found that vaccination with Ad4-prM-E leads to the development of a strong anti-ZIKV T-cell response without eliciting significant anti-ZIKV antibodies, while vaccination with Ad5-prM-E leads to the development of both anti-ZIKV antibody and T-cell responses in C57BL/6 mice. However, both vectors conferred protection against ZIKV infection in a lethal challenge model. Here we continued to characterize …
Perivascular Macrophages In The Neonatal Macaque Brain Undergo Massive Necroptosis After Simian Immunodeficiency Virus Infection, Diana G. Bohannon, Yueying Wang, Colin H. Reinhart, Julian B. Hattler, Jiangtao Luo, Hamid R. Okhravi, Jianshui Zhang, Qingsheng Li, Marcelo J. Kuroda, Woong-Ki Kim
Perivascular Macrophages In The Neonatal Macaque Brain Undergo Massive Necroptosis After Simian Immunodeficiency Virus Infection, Diana G. Bohannon, Yueying Wang, Colin H. Reinhart, Julian B. Hattler, Jiangtao Luo, Hamid R. Okhravi, Jianshui Zhang, Qingsheng Li, Marcelo J. Kuroda, Woong-Ki Kim
Nebraska Center for Virology: Faculty Publications
We previously showed that rhesus macaques neonatally infected with simian immunodeficiency virus (SIV) do not develop SIV encephalitis (SIVE) and maintain low brain viral loads despite having similar plasma viral loads compared to SIV-infected adults. We hypothesize that differences in myeloid cell populations that are the known target of SIV and HIV in the brain contribute to the lack of neonatal susceptibility to lentivirus-induced encephalitis. Using immunohistochemistry and immunofluorescence microscopy, we examined the frontal cortices from uninfected and SIV-infected infant and adult macaques (n = 8/ea) as well as adults with SIVE (n = 4) to determine differences in myeloid …
Characterization Of A Speciese Adenovirus Vector As A Zika Virus Vaccine, Brianna L. Bullard, Brigette N. Corder, David N. Gordon, Theodore C. Pierson, Eric A. Weaver
Characterization Of A Speciese Adenovirus Vector As A Zika Virus Vaccine, Brianna L. Bullard, Brigette N. Corder, David N. Gordon, Theodore C. Pierson, Eric A. Weaver
Nebraska Center for Virology: Faculty Publications
The development of a safe and efficacious Zika virus (ZIKV) vaccine remains a global health priority. In our previous work, we developed an Adenovirus vectored ZIKV vaccine using a low-seroprevalent human Adenovirus type 4 (Ad4-prM-E) and compared it to an Ad5 vector (Ad5-prM-E). We found that vaccination with Ad4-prM-E leads to the development of a strong anti-ZIKV T-cell response without eliciting significant anti-ZIKV antibodies, while vaccination with Ad5-prM-E leads to the development of both anti-ZIKV antibody and T-cell responses in C57BL/6 mice. However, both vectors conferred protection against ZIKV infection in a lethal challenge model. Here we continued to characterize …
Evaluation Of Antibody Response Directed Against Porcine Reproductive And Respiratory Syndrome Virus Structural Proteins, Hung Q. Luong, Huong T.L. Lai, Hiep L.X. Vu
Evaluation Of Antibody Response Directed Against Porcine Reproductive And Respiratory Syndrome Virus Structural Proteins, Hung Q. Luong, Huong T.L. Lai, Hiep L.X. Vu
Nebraska Center for Virology: Faculty Publications
Luciferase-immunoprecipitation system (LIPS), a liquid phase immunoassay, was used to evaluate antibody responses directed against the structural proteins of PRRSV in pigs that were experimentally infected with virulent PRRSV strains. First, the viral N protein was used as a model antigen to validate the assay. The LIPS results were highly comparable to that of the commercial IDEXX PRRS X3 ELISA. Subsequently, the assay was applied to simultaneously measure antibody reactivity against all eight structural proteins of PRRSV. The highest immunoreactivities were detected against GP3, M, and N proteins while the lowest reactivity was detected against ORF5a protein. Comparative analysis of …
Evaluating Gene Drive Approaches For Public Benefit, Michael R. Santos
Evaluating Gene Drive Approaches For Public Benefit, Michael R. Santos
United States Public Health Resources
Gene drive approaches—those which bias inheritance of a genetic element in a population of sexually reproducing organisms—have the potential to provide important public benefits. The spread of selected genetic elements in wild populations of organisms may help address certain challenges, such as transmission of vector-borne human and animal diseases and biodiversity loss due to invasive animals. Adapting various naturally occurring gene drive mechanisms to these aims is a long-standing research area, and recent advances in genetics have made engineering gene drive systems significantly more technically feasible. Gene drive approaches would act through changes in natural environments, thus robust methods to …
Genome-Wide Association Study To Identify Genetic Loci Associated With Gastrointestinal Nematode Resistance In Katahdin Sheep, G. M. Becker, K. M. Davenport, Joan M. Burke, Ronald M. Lewis, J. E. Miller, J. L.M. Morgan, D. R. Notter, B. M. Murdoch
Genome-Wide Association Study To Identify Genetic Loci Associated With Gastrointestinal Nematode Resistance In Katahdin Sheep, G. M. Becker, K. M. Davenport, Joan M. Burke, Ronald M. Lewis, J. E. Miller, J. L.M. Morgan, D. R. Notter, B. M. Murdoch
Department of Animal Science: Faculty Publications
Resistance to gastrointestinal nematodes has previously been shown to be a moderately heritable trait in some breeds of sheep, but the mechanisms of resistance are not well understood. Selection for resistance currently relies upon faecal egg counts (FEC), blood packed cell volumes and FAMACHA visual indicator scores of anaemia. Identifying genomic markers associated with disease resistance would potentially improve the selection process and provide a more reliable means of classifying and understanding the biology behind resistant and susceptible sheep. A GWAS was conducted to identify possible genetic loci associated with resistance to Haemonchus contortus in Katahdin sheep. Forty animals were …
Genetic Structure And Admixture In Sheep From Terminal Breeds In The United States, Kimberly M. Davenport, C. Heimke, S. D. Mc Kay, J. W. Thorne, Ronald M. Lewis, Todd Taylor, B. M. Murdoch
Genetic Structure And Admixture In Sheep From Terminal Breeds In The United States, Kimberly M. Davenport, C. Heimke, S. D. Mc Kay, J. W. Thorne, Ronald M. Lewis, Todd Taylor, B. M. Murdoch
Department of Animal Science: Faculty Publications
Selection for performance in diverse production settings has resulted in variation across sheep breeds worldwide. Although sheep are an important species to the United States, the current genetic relationship among many terminal sire breeds is not well characterized. Suffolk, Hampshire, Shropshire and Oxford (terminal) and Rambouillet (dual purpose) sheep (n = 248) sampled from different flocks were genotyped using the Applied Biosystems Axiom Ovine Genotyping Array (50K), and additional Shropshire sheep (n = 26) using the Illumina Ovine SNP50 BeadChip. Relationships were investigated by calculating observed heterozygosity, inbreeding coefficients, eigenvalues, pairwise Wright’s FST estimates and an identity by state matrix. …
Genome-Wide Transcriptome And Physiological Analyses Provide New Insights Into Peanut Drought Response Mechanisms, Sailaja Bhogireddy, Abishek Xavier, International Crops Research Institute For The Semi-Arid Tropics (Icrisat), Hyderabad, India, Nancy Layland, Renee Arias, Paxton Payton, Spurthi N. Nayak, Manish K. Pandey, Naveen Puppala, Rajeev K. Varshney
Genome-Wide Transcriptome And Physiological Analyses Provide New Insights Into Peanut Drought Response Mechanisms, Sailaja Bhogireddy, Abishek Xavier, International Crops Research Institute For The Semi-Arid Tropics (Icrisat), Hyderabad, India, Nancy Layland, Renee Arias, Paxton Payton, Spurthi N. Nayak, Manish K. Pandey, Naveen Puppala, Rajeev K. Varshney
United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications
Drought is one of the main constraints in peanut production in West Texas and eastern New Mexico regions due to the depletion of groundwater. A multi-seasonal phenotypic analysis of 10 peanut genotypes revealed C76-16 (C-76) and Valencia-C (Val-C) as the best and poor performers under deficit irrigation (DI) in West Texas, respectively. In order to decipher transcriptome changes under DI, RNAseq was performed in C-76 and Val-C. Approximately 369 million raw reads were generated from 12 different libraries of two genotypes subjected to fully irrigated (FI) and DI conditions, of which ~329 million (90.2%) filtered reads were mapped to the …
Error In Dna Mixture Analysis: Why The Application Of Forensic Dna Is Not A Perfect Science, Rachel Bisbee
Error In Dna Mixture Analysis: Why The Application Of Forensic Dna Is Not A Perfect Science, Rachel Bisbee
Honors Program: Senior Projects (Public)
Ever since the first use of DNA evidence in 1986, it has been heavily relied on in court as a means of both convicting felons and exonerating wrongfully imprisoned people. It is a valuable tool in investigations, but like everything else, is not perfect. There have been studies on the accuracy of DNA mixture interpretation in the past with varying results. This is because mixture interpretation is a complicated process that is not always as specific as would be ideal. This study attempted to determine if two students with the exact same education in forensic science and, more specifically, DNA …
Analysis Of Student Perceptions Of Just-In-Time Teaching Pedagogy In Pharmd Microbiology And Immunology Courses, Charitha Madiraju, Eglis Tellez-Corrales, Henry Hua, Jozef Stec, Andromeda M. Nauli, Deborah M. Brown
Analysis Of Student Perceptions Of Just-In-Time Teaching Pedagogy In Pharmd Microbiology And Immunology Courses, Charitha Madiraju, Eglis Tellez-Corrales, Henry Hua, Jozef Stec, Andromeda M. Nauli, Deborah M. Brown
Nebraska Center for Virology: Faculty Publications
Just-In-Time Teaching (JiTT) active learning pedagogy is utilized by various disciplines, but its value in a professional pharmacy curriculum has not yet been demonstrated. The purpose of our research study is to implement and evaluate JiTT in a Doctor of Pharmacy (PharmD) program. The impetus in implementing JiTT into a PharmD curriculum was to provide students with an out-of-classroom learning opportunity to enhance knowledge-based skills. The current study summarizes the implementation of JiTT in four distinct instances: two iterations of the required courses “Integrated Microbiology and Virology” (Fall 2016 and Fall 2017) and “Integrated Immunology” (Winter 2016–2017 and Winter 2017–2018). …
Lack Of Cd8+ T-Cell Co-Localization With Kaposi’S Sarcoma- Associated Herpesvirus Infected Cells In Kaposi’S Sarcoma Tumors, Salum J. Lidenge, For Yue Tso, Owen Ngalamika, Jaydeep Kolape, John R. Ngowi, Julius Mwaiselage, Charles Wood, John T. West
Lack Of Cd8+ T-Cell Co-Localization With Kaposi’S Sarcoma- Associated Herpesvirus Infected Cells In Kaposi’S Sarcoma Tumors, Salum J. Lidenge, For Yue Tso, Owen Ngalamika, Jaydeep Kolape, John R. Ngowi, Julius Mwaiselage, Charles Wood, John T. West
Nebraska Center for Virology: Faculty Publications
Despite the close association between Kaposi’s sarcoma (KS) and immune dysfunction, it remains unclear whether tumor infiltrating immune cells (TIIC), by their absence, presence, or dysfunction, are mechanistically correlated with KS pathogenesis. Therefore, their potential capacity to serve as prognostic biomarkers of KS disease progression or control is unclear. Because epidemic-KS (EpKS) occurs with HIV-1 co-infection, it is particularly important to compare TIIC between EpKS and HIV-negative African endemic-KS (EnKS) to dissect the roles of HIV-1 and Kaposi Sarcoma-associated herpesvirus (KSHV) in KS pathogenesis. This cross-sectional study of 13 advanced KS (4 EnKS, 9 EpKS) patients and 3 healthy controls …
Prevalence Of Kaposi's Sarcoma-Associated Herpesvirus And Transfusion-Transmissible Infections In Tanzanian Blood Donors, Salum J. Lidenge, Tara Tran, For Yue Tso, John R. Ngowi, Danielle M. Shea, Julius Mwaiselage, Charles Wood, John T. West
Prevalence Of Kaposi's Sarcoma-Associated Herpesvirus And Transfusion-Transmissible Infections In Tanzanian Blood Donors, Salum J. Lidenge, Tara Tran, For Yue Tso, John R. Ngowi, Danielle M. Shea, Julius Mwaiselage, Charles Wood, John T. West
Nebraska Center for Virology: Faculty Publications
Objective: Kaposi's sarcoma-associated herpesvirus (KSHV) is the causative agent for Kaposi's sarcoma (KS), one of the most common cancers in Tanzania. We have investigated KSHV prevalence and factors associated with KSHV infection in Tanzania.
Methods: This is a cross-sectional study of voluntary blood-donors from Dar es Salaam, Tanzania. Plasma was screened for KSHV, HIV-1, HBV, HCV and Treponema pallidum (syphilis). Associations between KSHV sero-status and risk factors were analyzed. Odds ratios (OR) and 95% confidence intervals (CI) are reported to evaluate risk factors of KSHV infection. All tests were 2-tailed, and P-values <0.05 were considered statistically significant.
Results: The overall KSHV seroprevalence was 56.9%. Significantly …
0.05>Incidence Of The Covid-19 In Iraq – Implications For Travellers, Maysaa Kadhim Al-Malkey, Maitham Ahmed Al-Sammak
Incidence Of The Covid-19 In Iraq – Implications For Travellers, Maysaa Kadhim Al-Malkey, Maitham Ahmed Al-Sammak
Nebraska Center for Virology: Faculty Publications
The first emerged Coronavirus Disease 2019 (COVID-19) was in Wuhan, Hubei Province, China at the end of 2019, then spread to the rest of China [1], followed by the spread of the COVID-19 epidemics into the world caused by the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) [2]. Many epidemiological assessments in different countries from Asia, Europe, and North America have been published [3]. Nevertheless, there are countries in the Middle East like Iraq, with a rapid increase in cases and a high number of deaths, with a lack of studies. It is worth noting that the Iraqi Foreign Ministry was …
Cervico-Vaginal Inflammatory Cytokine And Chemokine Responses To Two Different Siv Immunogens, Nikki P.L. Toledo, Hongzhao Li, Robert W. Omange, Tamara G. Dacoba, Jose Crecente-Campo, Dane Schalk, Mohammad A. Kashem, Eva Rakasz, Nancy Schultz-Darken, Qingsheng Li, James B. Whitney, Maria J. Alonso, Francis A. Plummer, Ma Luo
Cervico-Vaginal Inflammatory Cytokine And Chemokine Responses To Two Different Siv Immunogens, Nikki P.L. Toledo, Hongzhao Li, Robert W. Omange, Tamara G. Dacoba, Jose Crecente-Campo, Dane Schalk, Mohammad A. Kashem, Eva Rakasz, Nancy Schultz-Darken, Qingsheng Li, James B. Whitney, Maria J. Alonso, Francis A. Plummer, Ma Luo
Nebraska Center for Virology: Faculty Publications
Studies have shown that vaccine vectors and route of immunization can differentially activate different arms of the immune system. However, the effects of different HIV vaccine immunogens on mucosal inflammation have not yet been studied. Because mucosal sites are the primary route of HIV infection, we evaluated the cervico-vaginal inflammatory cytokine and chemokine levels of Mauritian cynomolgus macaques following immunization and boost using two different SIV vaccine immunogens. The PCS vaccine delivers 12 20-amino acid peptides overlapping the 12 protease cleavage sites, and the Gag/Env vaccine delivers the full Gag and full Env proteins of simian immunodeficiency virus. We showed …
Genetic Diversity Of Potassium Ion Channel Proteins Encoded By Chloroviruses That Infect Chlorella Heliozoae, Carter Murry, Irina V. Agarkova, Jayadri S. Ghosh, Fiona C. Fitzgerald, Roger M. Carlson, Brigitte Hertel, Kerri Kukovetz, Oliver Rauh, Gerhard Thiel, James L. Van Etten
Genetic Diversity Of Potassium Ion Channel Proteins Encoded By Chloroviruses That Infect Chlorella Heliozoae, Carter Murry, Irina V. Agarkova, Jayadri S. Ghosh, Fiona C. Fitzgerald, Roger M. Carlson, Brigitte Hertel, Kerri Kukovetz, Oliver Rauh, Gerhard Thiel, James L. Van Etten
Nebraska Center for Virology: Faculty Publications
Chloroviruses are large, plaque-forming, dsDNA viruses that infect chlorella-like green algae that live in a symbiotic relationship with protists. Chloroviruses have genomes from 290 to 370 kb, and they encode as many as 400 proteins. One interesting feature of chloroviruses is that they encode a potassium ion (K+) channel protein named Kcv. The Kcv protein encoded by SAG chlorovirus ATCV-1 is one of the smallest known functional K+ channel proteins consisting of 82 amino acids. The KcvATCV-1 protein has similarities to the family of two transmembrane domain K+ channel proteins; it consists of two transmembrane -helixes with a pore region …
Viral And Immunological Analytes Are Poor Predictors Of The Clinical Treatment Response In Kaposi’S Sarcoma Patients, Salum J. Lidenge, For Yue Tso, Yasaman Mortazavi, John R. Ngowi, Danielle M. Shea, Julius Mwaiselage, Charles Wood, John T. West
Viral And Immunological Analytes Are Poor Predictors Of The Clinical Treatment Response In Kaposi’S Sarcoma Patients, Salum J. Lidenge, For Yue Tso, Yasaman Mortazavi, John R. Ngowi, Danielle M. Shea, Julius Mwaiselage, Charles Wood, John T. West
Nebraska Center for Virology: Faculty Publications
Kaposi’s sarcoma-associated herpes virus (KSHV) is the etiologic agent for Kaposi’s sarcoma (KS). The prognostic utility of KSHV and HIV-1 (human immunodeficiency virus) viremia as well as immunological parameters in clinical management of participants with KS is unclear. The objective of this study was to investigate viral and immunological parameters as predictors of KS treatment responses in participants with KS from sub-Saharan Africa (SSA). Plasma KSHV-DNA, HIV-1 viral load, total anti-KSHV antibody, KSHV-neutralizing antibody (nAb), cytokine/chemokine levels, and T-cell differentiation subsets were quantified before and after KS treatment in 13 participants with KS and in 13 KSHV-infected asymptomatic control individuals. …
Non-Naturally Occurring Porcine Reproduction And Respiratory Syndrome Virus (Prrsv) And Methods Of Using, Hiep Lai Xuan Vu, Fernando Osorio, William W. Laegreid, Asit K. Pattnaik, Fangrui Ma
Non-Naturally Occurring Porcine Reproduction And Respiratory Syndrome Virus (Prrsv) And Methods Of Using, Hiep Lai Xuan Vu, Fernando Osorio, William W. Laegreid, Asit K. Pattnaik, Fangrui Ma
Nebraska Center for Virology: Faculty Publications
A non-naturally occuring porcine reproductive and respiratory syndrome virus (PRRSV) is provided herein, and methods of making and using the non-naturally occurring PRRSV also are provided.
Diversity Of Trna Clusters In The Chloroviruses, Garry A. Duncan, David D. Dunigan Ph. D., James L. Van Etten
Diversity Of Trna Clusters In The Chloroviruses, Garry A. Duncan, David D. Dunigan Ph. D., James L. Van Etten
Nebraska Center for Virology: Faculty Publications
Viruses rely on their host’s translation machinery for the synthesis of their own proteins. Problems belie viral translation when the host has a codon usage bias (CUB) that is different from an infecting virus due to differences in the GC content between the host and virus genomes. Here, we examine the hypothesis that chloroviruses adapted to host CUB by acquisition and selection of tRNAs that at least partially favor their own CUB. The genomes of 41 chloroviruses comprising three clades, each infecting a different algal host, have been sequenced, assembled and annotated. All 41 viruses not only encode tRNAs, but …
Comparison Of Poly-A+ Selection And Rrna Depletion In Detection Of Lncrna In Two Equine Tissues Using Rna-Seq, Anna R. Dahlgren, Erica Y. Scott, Tamer Mansour, Erin N. Hales, Pablo J. Ross, Theodore S. Kalbfleisch, James N. Macleod, Jessica Lynn Petersen, Rebecca R. Bellone, Carrie J. Finno
Comparison Of Poly-A+ Selection And Rrna Depletion In Detection Of Lncrna In Two Equine Tissues Using Rna-Seq, Anna R. Dahlgren, Erica Y. Scott, Tamer Mansour, Erin N. Hales, Pablo J. Ross, Theodore S. Kalbfleisch, James N. Macleod, Jessica Lynn Petersen, Rebecca R. Bellone, Carrie J. Finno
Department of Animal Science: Faculty Publications
Long non-coding RNAs (lncRNAs) are untranslated regulatory transcripts longer than 200 nucleotides that can play a role in transcriptional, post-translational, and epigenetic regulation. Traditionally, RNA-sequencing (RNA-seq) libraries have been created by isolating transcriptomic RNA via poly-A+ selection. In the past 10 years, methods to perform ribosomal RNA (rRNA) depletion of total RNA have been developed as an alternative, aiming for better coverage of whole transcriptomic RNA, both polyadenylated and non-polyadenylated transcripts. The purpose of this study was to determine which library preparation method is optimal for lncRNA investigations in the horse. Using liver and cerebral parietal lobe tissues from two …
Special Topic: Cell-Based Meat: The Need To Assess Holistically, Cameron Faustman, Deb Hamernik, Michael Looper, Steven A. Zinn
Special Topic: Cell-Based Meat: The Need To Assess Holistically, Cameron Faustman, Deb Hamernik, Michael Looper, Steven A. Zinn
Department of Animal Science: Faculty Publications
Proof-of-principle for large-scale engineering of edible muscle tissue, in vitro, was established with the product’s introduction in 2013. Subsequent research and commentary on the potential for cell-based meat to be a viable food option and potential alternative to conventional meat have been significant. While some of this has focused on the biology and engineering required to optimize the manufacturing process, a majority of debate has focused on cultural, environmental, and regulatory considerations. Animal scientists and others with expertise in muscle and cell biology, physiology, and meat science have contributed to the knowledge base that has made cell-based meat possible and …
Asas Celebrates 10 Years Of Publishing Animal Frontiers: The Review Magazine Of Animal Agriculture, Debora L. Hamernik, Meghan Wulster-Radcliffe, Steven A. Zinn
Asas Celebrates 10 Years Of Publishing Animal Frontiers: The Review Magazine Of Animal Agriculture, Debora L. Hamernik, Meghan Wulster-Radcliffe, Steven A. Zinn
Department of Animal Science: Faculty Publications
In July 2011, the first issue of Animal Frontiers was published by an international consortium including the American Society of Animal Science (ASAS), the Canadian Society of Animal Science (CSAS), and the European Federation of Animal Science (EAAP). Development of an international, science-based, open access journal that provided review articles and global perspectives on the complex dynamics associated with the production of animal-sourced foods was an accomplishment in and of itself, but the ability to meet the needs of a diverse community of readers, including scientists, policy makers, educators, and the general public set Animal Frontiers apart from other journals. …
The Effect Of Varicocele On Semen Quality In Boars Exposed To Heat Stress, Tasha R. Gruhot, Brett White, Benny Mote
The Effect Of Varicocele On Semen Quality In Boars Exposed To Heat Stress, Tasha R. Gruhot, Brett White, Benny Mote
Department of Animal Science: Faculty Publications
Semen quality has a dramatic impact on reproductive efficiency in the swine industry, influencing both conception rate and litter size. The objective of this study was to assess whether the presence of varicocele hinders semen quality in both thermoneutral and heat stress (HS) conditions. At approximately 6 mo of age, ultrasonography was used to measure left and right pampiniform plexus area in order to detect varicocele in maternal line boars at the University of Nebraska–Lincoln. Between 10 and 12 mo of age, semen was collected from each boar (n = 28) twice weekly. Boars were collected under thermoneutral conditions, were …
Formation And Characterization Of Lipid Droplets Of The Bovine Corpus Luteum, Heather A. Talbott, Michele R. Plewes, Crystal Krause, Xiaoying Hou, Pan Zhang, William B. Rizzo, Jennifer R. Wood, Andrea S. Cupp, John S. Davis
Formation And Characterization Of Lipid Droplets Of The Bovine Corpus Luteum, Heather A. Talbott, Michele R. Plewes, Crystal Krause, Xiaoying Hou, Pan Zhang, William B. Rizzo, Jennifer R. Wood, Andrea S. Cupp, John S. Davis
Department of Animal Science: Faculty Publications
Establishment and maintenance of pregnancy depends on progesterone synthesized by luteal tissue in the ovary. Our objective was to identify the characteristics of lipid droplets (LDs) in ovarian steroidogenic cells. We hypothesized that LDs are a major feature of steroidogenic luteal cells and store cholesteryl esters. Whole bovine tissues, isolated ovarian steroidogenic cells (granulosa, theca, small luteal, and large luteal), and isolated luteal LDs were assessed for LD content, LD-associated proteins and lipid analyses. Bovine luteal tissue contained abundant lipid droplets, LD-associated perilipins 2/3/5, hormone-sensitive lipase, and 1-acylglycerol-3-phosphate O-acyltransferase ABHD5. Luteal tissue was enriched in triglycerides (TGs) compared to other …
Asas-Nanp Symposium: Ruminant/ Nonruminant Feed Composition: Challenges And Opportunities Associated With Creating Large Feed Composition Tables, Andres Schlageter-Tello, George C. Fahey, Tarra Freel, Liz Koutsos, Phillip S. Miller, William P. Weiss
Asas-Nanp Symposium: Ruminant/ Nonruminant Feed Composition: Challenges And Opportunities Associated With Creating Large Feed Composition Tables, Andres Schlageter-Tello, George C. Fahey, Tarra Freel, Liz Koutsos, Phillip S. Miller, William P. Weiss
Department of Animal Science: Faculty Publications
Traditional feed composition tables have been a useful tool in the field of animal nutrition throughout the last 70 yr. The objective of this paper is to discuss the challenges and opportunities associated with creating large feed ingredient composition tables. This manuscript will focus on three topics discussed during the National Animal Nutrition Program (NANP) Symposium in ruminant and nonruminant nutrition carried out at the American Society of Animal Science Annual Meeting in Austin, TX, on July 11, 2019, namely: 1) Using large datasets in feed composition tables and the importance of standard deviation in nutrient composition as well as …
Impact Of Cow Milk Production On Cow–Calf Performance In The Nebraska Sandhills, Tasha M. King, Jacki A. Musgrave, Richard N. Funston, J. Travis Mulliniks
Impact Of Cow Milk Production On Cow–Calf Performance In The Nebraska Sandhills, Tasha M. King, Jacki A. Musgrave, Richard N. Funston, J. Travis Mulliniks
Department of Animal Science: Faculty Publications
Livestock producers have tended to select for increased output traits like milk production and growth to increase productivity. Even with the increased selection for greater calf growth potential, some regions in the United States have seen a plateau in calf body weight (BW) at weaning (Lalman et al., 2019). When focusing on reaching maximum potential of these output traits, it is important to consider the multitude of variables that affect a production system. With increased milk production, nutrient requirements for cows become increased (Ferrell and Jenkins, 1984; Montaño-Bermudez et al., 1990), which may not be met if range and forage …
Influence Of Host Genetics In Shaping The Rumen Bacterial Community In Beef Cattle, Waseem Abbas, Jeremy T. Howard, Henry Paz, Kristin E. Hales, James E. Wells, Larry A. Kuehn, Galen E. Erickson, Matthew L. Spangler, Samodha Fernando
Influence Of Host Genetics In Shaping The Rumen Bacterial Community In Beef Cattle, Waseem Abbas, Jeremy T. Howard, Henry Paz, Kristin E. Hales, James E. Wells, Larry A. Kuehn, Galen E. Erickson, Matthew L. Spangler, Samodha Fernando
Department of Animal Science: Faculty Publications
In light of recent host-microbial association studies, a consensus is evolving that species composition of the gastrointestinal microbiota is a polygenic trait governed by interactions between host genetic factors and the environment. Here, we investigated the effect of host genetic factors in shaping the bacterial species composition in the rumen by performing a genome-wide association study. Using a common set of 61,974 single-nucleotide polymorphisms found in cattle genomes (n = 586) and corresponding rumen bacterial community composition, we identified operational taxonomic units (OTUs), Families and Phyla with high heritability. The top associations (1-Mb windows) were located on 7 chromosomes. These …
Genetic Structure And Admixture In Sheep From Terminal Breeds In The United States, Kimberly M. Davenport, C. Hiemke, Stephanie D. Mc Kay, J. W. Thorne, Ronald M. Lewis, Todd Taylor, B. M. Murdoch
Genetic Structure And Admixture In Sheep From Terminal Breeds In The United States, Kimberly M. Davenport, C. Hiemke, Stephanie D. Mc Kay, J. W. Thorne, Ronald M. Lewis, Todd Taylor, B. M. Murdoch
Department of Animal Science: Faculty Publications
Selection for performance in diverse production settings has resulted in variation across sheep breeds worldwide. Although sheep are an important species to the United States, the current genetic relationship among many terminal sire breeds is not well characterized. Suffolk, Hampshire, Shropshire and Oxford (terminal) and Rambouillet (dual purpose) sheep (n = 248) sampled from different flocks were genotyped using the Applied Biosystems Axiom Ovine Genotyping Array (50K), and additional Shropshire sheep (n = 26) using the Illumina Ovine SNP50 BeadChip. Relationships were investigated by calculating observed heterozygosity, inbreeding coefficients, eigenvalues, pairwise Wright’s FST estimates and an identity by state matrix. …
Demonstrating Mate Choice Copying In Spiders Requires Further Research, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets
Demonstrating Mate Choice Copying In Spiders Requires Further Research, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets
Eileen Hebets Publications
Mate choice copying—when individuals learn to prefer mates or mate types that have been chosen by others—can influence trait evo-lution and speciation (Varela et al. 2018; Dion et al. 2019). Most examples of mate choice copying are from fish, birds, and mammals including humans (Varela et al. 2018). However, 2 invertebrate examples—fruit flies and wolf spiders—have been used to argue that the phenomenon may be phylogenetically widespread, and perhaps the rule rather than the exception in nature (Varela et al. 2018). Here, we revisit the evidence for mate choice copying in wolf spiders (Fowler-Finn et al. 2015) in light of …
Lamb Wool Shedding Is A Good Predictor Of Ewe Wool Shedding, Napoleón Vargas Jurado, Larry Kuehn, Ronald M. Lewis
Lamb Wool Shedding Is A Good Predictor Of Ewe Wool Shedding, Napoleón Vargas Jurado, Larry Kuehn, Ronald M. Lewis
Department of Animal Science: Faculty Publications
Interest in reducing labour costs due to shearing has led to development of breed types that shed their wool naturally. Selection at young ages can facilitate response. Reliability of predictions of adult from lamb wool shedding (WS) is thus key in the design of breeding programmes to increase shedding. Our objectives were to estimate heritabilities and genetic relationships between WS measured once in lambs and repeatedly in ewes and to assess the accuracy of lamb WS EBV to predict ewe WS EBV based on a multi‐trait threshold or a repeatability model. Data were 4,971 lamb and 3,335 ewe WS records …
Effect Of Ammoniation And Harvest Method On Waste And Consumption Of Corn Residue Bales Fed To Cows In A Round Bale Feeder, Ashley C. Conway, Zachary E. Carlson, Fred H. Hilscher Jr, J. C. Macdonald, Terry J. Klopfenstein, Mary E. Drewnoski
Effect Of Ammoniation And Harvest Method On Waste And Consumption Of Corn Residue Bales Fed To Cows In A Round Bale Feeder, Ashley C. Conway, Zachary E. Carlson, Fred H. Hilscher Jr, J. C. Macdonald, Terry J. Klopfenstein, Mary E. Drewnoski
Department of Animal Science: Faculty Publications
To determine the effects of harvest method and ammoniation (3.7% of dry matter) on consumption and waste of baled corn residue, a 6 × 6 Latin square with a 3 × 2 factorial treatment structure was conducted. Six treatments consisted of either nonammoniated or ammoniated residue, harvested one of three ways: conventional rake and bale (CONV), New Holland Cornrower with two rows of stem chopped into the windrow with tailings (2ROW), or EZBale system (EZB) with a disengaged combine spreader and tailings dropped in a windrow. Open cows were grouped by body weight to produce a light block of two …