Forest Biology Commons^™

Guide To Usda Agroforestry Research Funding Opportunities

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This guide is intended for researchers and academics pursuing funding opportunities for research in agroforestry - the intentonal integration of trees and agriculture. The guide provides an overview of external agroforestry research funding opportunities offered by the United States Department of Agriculture (USDA) agencies.

This publication was created for serveral reasons. Agroforestry is not always clearly identified in announcements about research funding opportunities. In addition, research on agroforestry can require a longer time horizon than research on annual systems, so awareness of multiple funding sources or multi-year funding opportunities can be useful. Last, though USDA offers grants that can support …

Agroforestry Standards For Regenerative Agriculture [Review], Craig R. Elevitch, D. Niki Mazaroli, Diane Ragone

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry is increasingly being recognized as a holistic food production system that can have numerous significant environmental, economic, and social benefits. This growing recognition is paralleled in the USA by the budding interest in regenerative agriculture and motivation to certify regenerative practices. Current efforts to develop a regenerative agriculture certification offer an opportunity to consider agroforestry’s role in furthering regenerative goals. To understand this opportunity, we first examine how agroforestry practices can advance regenerative agriculture’s five core environmental concerns: soil fertility and health, water quality, biodiversity, ecosystem health, and carbon sequestration. Next, we review a subset of certification programs, standards, …

Phosphorus Limitation Of Aboveground Production In Northern Hardwood Forests, Shinjini Goswami, Melany C. Fisk, Matthew A. Vadeboncoeur, Mariann Garrison-Johnston, Ruth D. Yanai, Timothy J. Fahey

All Materials

Forest productivity on glacially derived soils with weatherable phosphorus (P) is expected to be limited by nitrogen (N), according to theories of long-term ecosystem development. However, recent studies and model simulations based on resource optimization theory indicate that productivity can be co-limited by N and P. We conducted a full factorial N × P fertilization experiment in 13 northern hardwood forest stands of three age classes in central New Hampshire, USA, to test the hypothesis that forest productivity is co-limited by N and P. We also asked whether the response of productivity to N and P addition differs among species …

Carbon Fluxes And Interannual Drivers In A Temperate Forest Ecosystem Assessed Through Comparison Of Top-Down And Bottom-Up Approaches, Andrew P. Ouimette, Scott V. Ollinger, Andrew D. Richardson, David Y. Hollinger, Trevor F. Keenan, Lucie C. Lepine, Matthew A. Vadeboncoeur

All Materials

Despite decades of research, gaining a comprehensive understanding of carbon (C) cycling in forests remains a considerable challenge. Uncertainties stem from persistent methodological limitations and the difficulty of resolving top-down estimates of ecosystem C exchange with bottom-up measurements of individual pools and fluxes. To address this, we derived estimates and associated uncertainties of ecosystem C fluxes for a 100-125 year old mixed temperate forest stand at the Bartlett Experimental Forest, New Hampshire, USA, using three different approaches: (1) tower-based eddy covariance, (2) a biometric approach involving C flux measurements of individual ecosystem subcomponents, and (3) an inventory approach involving changes …

Efficacy Of Herbivore Exclusion On Planted Tree Seedling Vitality On A Reclaimed Surface Mine In Eastern Kentucky, Zachary J. Hackworth

Theses and Dissertations--Forestry and Natural Resources

Conventional Appalachian surface-mine reclamation techniques repress natural forest regeneration, and tree plantings are often necessary for reforestation. Reclaimed Appalachian surface mines harbor a suite of mammal herbivores that forage on recently planted seedlings. Anecdotal reports across Appalachia have implicated herbivory in the hindrance and failure of reforestation efforts, yet empirical evaluation of herbivory impacts on planted seedling vitality in this region remains relatively uninitiated. First growing-season survival, height growth, and mammal herbivory damage of black locust (Robinia pseudoacacia L.), shortleaf pine (Pinus echinata Mill.), and white oak (Quercus alba L.) are presented in response to varying intensities …

The Role Of Environmental Filtering In Structuring Appalachian Tree Communities: Topographic Influences On Functional Diversity Are Mediated Through Soil Characteristics, Julia I. Chapman, Ryan W. Mcewan

Biology Faculty Publications

Identifying the drivers of community assembly has long been a central goal in ecology, and the development of functional diversity indices has provided a new way of detecting the influence of environmental gradients on biotic communities. For an old-growth Appalachian forest, we used path analysis to understand how patterns of tree functional diversity relate to topography and soil gradients and to determine whether topographic effects are mediated through soil chemistry. All of our path models supported the idea of environmental filtering: stressful areas (high elevation, low soil moisture, low soil nutrients) were occupied by communities of low functional diversity, which …

Assessing Spatio-Temporal Patterns Of Forest Decline Across A Diverse Landscape In The Klamath Mountains Using A 28-Year Landsat Time-Series Analysis, Drew S. Bost

Cal Poly Humboldt theses and projects

Rates of tree mortality in California and the Pacific Northwest have greatly increased in recent years, driven largely by pest and pathogen outbreaks as well as the effects of hotter, warmer droughts. While there have been a multitude of regional-scale assessments of mortality and forest decline, landscape-level studies are necessary to better identify forests that are most vulnerable to decline and to anticipate future changes. This need is particularly notable in the remote and little-studied mountains of northwest California, which are renowned for their diverse, heterogeneous vegetation types. A recent observation of elevated levels of Shasta red fir (Abies …

Fungi Of Forests: Examining The Diversity Of Root-Associated Fungi And Their Responses To Acid Deposition, Donald Jay Nelsen

Graduate Theses and Dissertations

Global importance of forests is difficult to overestimate, given their role in oxygen production, ecological roles in nutrient cycling and supporting numerous living species, and economic value for industry and as recreational zones. Fitness of the forest-forming trees strongly depends on microbial communities associated with tree roots. In particular, fungi impact tree fitness: mycorrhizal species provide water and nutrients for the trees in exchange for C, endophytic fungi play key roles in host defense against pathogenic organisms, and saprotrophic fungi decompose dead organic matter and facilitate nutrient cycling. In addition, pathogenic fungal species strongly affect forest fitness. Despite their importance, …

Population Dynamics Of Ouachita Dusky Salamanders (Desmognathus Brimleyorum) In A Managed Forest Landscape, Kelly Marie Halloran

Graduate Theses and Dissertations

With anthropogenic alteration of landscapes increasing world-wide, managed forests are increasingly important as providers of ecosystem services including habitat for numerous wildlife species. It is crucial to maintain a balance between timber production and conservation of biodiversity on managed landscapes. Salamander populations can play key roles in the function and diversity of temperate forest ecosystems. Several studies have reported negative effects of forestry on terrestrial plethodontid salamanders, but less research has focused on stream-dwelling species, evaluated mechanisms driving observed shifts in abundance, or described the dynamics of populations residing in managed forests. Using a Before-After-Control-Impact design, we examined the effects …

Northwest Forest Plan The First 20 Years (1994-2013): Watershed Condition Status And Trend, Stephanie A. Miller, Sean N. Gordon, Peter Eldred, Ronald M. Beloin, Steve Wilcox, Mark Raggon, Heidi Andersen, Ariel Muldoon

Institute for Sustainable Solutions Publications and Presentations

We used two data sets to evaluate stream and upslope/riparian condition for sixth-field watersheds in each aquatic province within the Northwest Forest Plan (NWFP) area. The stream evaluation was based on stream sampling data collected from 2002 to the 2013 (214 watersheds) as part of an eight year repeating (rotating) sample design. We are currently halfway through our second rotation of stream sampling, and have repeated 110 watersheds since the second rotation began in 2009. The analysis presented in this report uses roughly half the number of watersheds as was originally intended by the sample design since re-visitation will not …

What Controls Variation In Carbon Use Efficiency Among Amazonian Tropical Forests?, Christopher E. Doughty, Gregory R. Goldsmith, Nicolas Raab, Cecile A. J. Girardin, Filio Farfan-Amezquita, Walter Huaraca-Huasco, Javier E. Silva-Espejo, Alejandro Araujo-Murakami, Antonio C. L. Da Costa, Wanderley Rocha, David Galbraith, Patrick Meir, Dan B. Metcalfe, Yadvinder Malhi

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Why do some forests produce biomass more efficiently than others? Variations in Carbon Use Efficiency (CUE: total Net Primary Production (NPP)/ Gross Primary Production (GPP)) may be due to changes in wood residence time (Biomass/NPP_wood), temperature, or soil nutrient status. We tested these hypotheses in 14, one ha plots across Amazonian and Andean forests where we measured most key components of net primary production (NPP: wood, fine roots, and leaves) and autotrophic respiration (R_a; wood, rhizosphere, and leaf respiration). We found that lower fertility sites were less efficient at producing biomass and had higher rhizosphere respiration, …

A Study Of Reptile Community Diversity Related To Habitat Characteristics At Marojejy National Park, Julia Kowala

Independent Study Project (ISP) Collection

Marojejy National Park is known for its diversity. Though it is home to the silky sifaka, it has extensive populations of herpetofauna. Seventy-seven species of reptiles have been documented in Marojejy National Park. This study aimed to evaluate the reptile community diversity and habitat characteristics in the park through systematic searches of ten-by-ten-meter plots, and inventory of species as they were found throughout the park. Systematic searches yielded the finding of 19 of the total 25 species identified. Some species that were found had not been previously seen at Marojejy before, most notably, Brookesia sp. “Nosy Hara”, Brookesia desperata, Furcifer …

Survey Of Invasive Lantana Camara At Makirovana-Tsihomanaomby Forest Complex, Eliza Pessereau

Independent Study Project (ISP) Collection

Lantana camara is a shrub known globally as an invasive pest that grows primarily in degraded areas. The species is known to exist at Makirovana-Tsihomanaomby, a forest complex in northeastern Madagascar with 167 endemic species of flora and fauna, several of which are on the IUCN Red List. The complex, specifically Tsihomanaomby forest, is used as a resource for the three rural communes that live on its outskirts, meaning that it experiences much human activity. The objective of this study was to survey the population of L. camara at two sites: one just outside of the Tsihomanaomby forest and one …

Tropical Cyclones Disrupt The Relationship Between Tree Height And Species Diversity: Comment, Teng-Chiu Lin, Lixin Wang, Chengyang Zheng, Ryan W. Mcewan, Chung-Te Chang, Jyh-Min Chiang, Chung-Hao Chi

Biology Faculty Publications

In a recent report on the patterns of tree species richness in eastern and western North America, Marks et al. (2016) claimed to have identified an operational indicator of environmental harshness (maximum tree height) and concluded that environmental stressors that limit tree height also act as ecological filters on species richness. Marks et al. (2017) attributed the positive association between species richness and maximum tree height to both the direct effects of environmental harshness on species richness and the indirect effects of environmental harshness on species richness as mediated by maximum tree height.

This finding overlooked the fact that many …

A Global Study Of Gpp Focusing On Light-Use Efficiency In A Random Forest Regression Model, Suhua Wei, Chuixiang Yi, Wei Fang, George Hendrey

Publications and Research

Light-use efficiency (LUE) is at the core of mechanistic modeling of global gross primary production (GPP). However, most LUE estimates in global models are satellite based and coarsely measured with emphasis on environmental variables. Others are from eddy covariance towers with much greater spatial and temporal data quality and emphasis on mechanistic processes, but in a limited number of sites. In this study, we conducted a comprehensive global study of tower-based LUE from 237 FLUXNET towers, and scaled up LUEs from in situ tower level to global biome level. We integrated the tower-based LUE estimates with key environmental and biological …

Range-Wide Prevalence And Impacts Of Pseudocercosporella Inconspicua On Lilium Grayi And An Assessment Of L. Superbum And L. Michauxii As Reservoirs, Cindy L. Barrett

Electronic Theses and Dissertations

Lilium grayi (Gray’s Lily), a southern Appalachian endemic species, is threatened by a Lilium-specific fungal pathogen, Pseudocercosporella inconspicua. The disease is characterized by tan lesions that can cause early senescence, while also lowering seed production and viability. This project tested for P. inconspicua conidia and accessed health at nine locations. The disease was present and ubiquitous across the range of L. grayi. Through identification of P. inconspicua conidia in the field, L. superbum (Turk’s Cap Lily) was identified as an additional host, while L. michauxii (Michaux’s Lily) was disease-free. However, infection was inducible in both species. With …

Decadal Vegetation Succession Along A Chronosequence Within Eucalyptus Obliqua Wet Forest, Southern Tasmania, Christine Dobbin

Independent Study Project (ISP) Collection

Southern Tasmania is home to fire dependent mixed forests, which, if not maintained, will eventually be replaced by the rainforest understorey. Wet eucalypt forest succession after disturbance events was investigated through floristic and vertical measurements of four north facing chronosequence plots with labels describing the age class of each, from regrowth to mature sites. This study was possible due to the establishment of permanent 50m x 50m plots in 2007 for longitudinal monitoring and subsequent illustration of forest dynamics following disturbance, including clearfell burns and wildfire. The contents of this report are the comparative analyses of the findings from the …

“Fence-Line” Contrast Soundscape Study Of Forested Lands In Allegany State Park And Allegheny National Forest: Is There An Impact Of Oil And Gas Development On An Eastern Forest Soundscape?, Kasey Lynne Osborne

Theses, Dissertations and Capstones

“Natural resources”—an inclusive term indiscriminate of splendor or conservation status – require proper management, be it for forest, oil, water, wildlife, or even soundscapes. The soundscape, or all sounds (biophony, anthrophony, geophony) characterizing an area, is both an ecological monitoring tool and a resource itself—a component of the landscape. As energy demands surge, the oil/gas region of the Appalachian Plateau adjusts to unconventional extraction concurrent with traditional drilling operations. Energy development leaves enduring spatial footprints on the landscape, such as fragmentation from well-pad matrices. Soundscape patterns may not be as readily observed as visual cues, but their analysis can reveal …

High Resolution Land Cover Of Kansas (2015; Dataset), Darci A. Paull, Jakob W. Whitson, Abbey L. Marcotte, Greg C. Liknes, Dacia M. Meneguzzo, Todd A. Kellerman

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This data publication contains 2015 high-resolution land cover data for each of the 105 counties within Kansas. These data are a digital representation of land cover derived from 1-meter aerial imagery from the National Agriculture Imagery Program (NAIP). There is a separate file for each county. Data are intended for use in rural areas and therefore do not include land cover in cities and towns. Land cover classes (tree cover, other land cover, water, or city/town) were mapped using an object-based image analysis approach and supervised classification.

Agroforestry: Enhancing Resiliency In U. S. Agricultural Landscapes Under Changing Conditions, Gary Bentrup, Michele M. Schoeneberger, Toral Patel-Weynand

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry, the intentional integration of trees and shrubs into crop and animal production systems, is being deployed to enhance productivity, profitability, and environmental stewardship of agricultural operations and lands across the United States. This assessment provides a science-based synthesis on the use of agroforestry for mitigation and adaptation services in the face of climatic variability and change. It provides technical input to land-use sector issues in the National Climate Assessment (NCA) and serves as a framework for including agroforestry systems in agricultural strategies to improve productivity and food security and to build resilience in these landscapes. It also provides follow-up …

Executive Summary, Agroforestry: Enhancing Resiliency In U. S. Agricultural Landscapes Under Changing Conditions, Toral Patel-Weynand, Gary Bentrup, Michele M. Schoeneberger

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry, the intentional integration of trees and shrubs into crop and animal production systems, is being deployed to enhance productivity, profitability, and environmental stewardship of agricultural operations and lands across the United States. The full assessment at https://doi.org/10.2737/WO-GTR-96 and summarized here provides a science-based synthesis on the use of agroforestry for mitigation and adaptation services in the face of climatic variability and change. It provides technical input to land-use sector issues in the National Climate Assessment (NCA) and serves as a framework for including agroforestry systems in agricultural strategies to improve productivity and food security and to build resilience in …

The Effects Of Disturbance And Species Specific Interactions On Diversity In An Agent Based Forest Simulation, Matthew E. Mills

Theses and Dissertations

In ecology literature, there is much data which suggests that conspecific negative density dependence (CNDD) and abiotic disturbances increase biodiversity in forests. This thesis elucidates the notion that not only do these two forces increase diversity, but they may also interact with one another in order to achieve higher levels of biodiversity. Abiotic disturbances, like fires and hurricanes, can indirectly impact conspecific effects because when these forces remove individuals from the landscape, the role of the conspecific effects will change. The interaction of these two factors in biodiversity are explored in an agent based forest simulation through a resource surface. …

Pteropus Voeltzkowi And The Understory: A Study Of The Behavioral Impacts Of The Pemba Flying Fox On The Vegetation And Soil Quality Of Pemba Island, Lea Davidson

Independent Study Project (ISP) Collection

This study examines the impact of Pteropus voeltzkowi , colloquially known as the Pemba Flying Fox, on biodiversity and health of the forest ground layer. Known to serve as reforesters, high concentrations of both fruit seeds and nutrient dense guano are introduced into specific environmental locations due to the bat's behavioral patterns. Working around two roost locations, one in Ngezi Forest and the other at the Kidike conservation site near Mjini Ole, diversity of juvenile vegetation was measured and quantified. In a laboratory setting, soil samples from both sites were analyzed for impacts of guano concentration on soil chemical properties. …

Silica Uptake And Release In Live And Decaying Biomass In A Northern Hardwood Forest, Wim Clymans, Daniel J. Conley, John J. Battles, Patrick J. Frings, Mary Margaret Koppers, Gene E. Likens, Chris E. Johnson

Civil and Environmental Engineering - All Scholarship

In terrestrial ecosystems, a large portion (20–80%) of the dissolved Si (DSi) in soil solution has passed through vegetation. While the importance of this “terrestrial Si filter” is generally accepted, few data exist on the pools and fluxes of Si in forest vegetation and the rate of release of Si from decomposing plant tissues. We quantified the pools and fluxes of Si through vegetation and coarse woody debris (CWD) in a northern hardwood forest ecosystem (Watershed 6, W6) at the Hubbard Brook Experimental Forest (HBEF) in New Hampshire, USA. Previous work suggested that the decomposition of CWD may have significantly …

Do Novel Weapons That Degrade Mycorrhizal Mutualisms Explain Invasive Species Success?, Philip L. Pinzone Mr.

Biology Theses

Invasive plants often dominate novel habitats where they did not co-evolve with local species. Several hypotheses suggest mechanisms that explain increased exotic plant success, including 'novel weapons' and 'degraded mutualisms'. Japanese knotweed (Fallopia japonica) and European buckthorn (Rhamnus cathartica) are widespread plant invaders in North America that can dominate ecosystems. The goal of this study is to test whether these impacts are more consistent with novel weapons or degraded mutualism hypotheses. I examine tree seedling recruitment, (germination and initial survival) growth, (biomass) and mycorrhizal invasion (AMF content) as a function of F. japonica and R. cathartica …

The Mexican Water Forest: Benefits Of Using Remote Sensing Techniques To Assess Changes In Land Use And Land Cover, Maria F. Lopez Ornelas

Master's Projects and Capstones

In the past 30 years, anthropogenic activities like urbanization, agriculture, road fragmentation and deforestation have resulted in changes in the land use and land cover (LULC) in the Mexican Water Forest. Due to the important ecosystem services, and the natural resources this forest provides, in Mexico, it has become increasingly necessary to use new technologies and tools to support the planning, implementation and integration of forest management and conservation plans, as well as ecological and socioeconomic analysis of this ecosystem. Remote Sensing techniques and Geographic Information Systems (GIS) have been a true technological and methodological revolution in the acquisition, management …

Changes In Floristic Composition In The State Forests In Worcester County (Massachusetts) Over 34 Years, Flor A. Monroe

Sustainability and Social Justice

ABSTRACT

CHANGES IN FOREST DIVERSITY OF STATE FOREST IN WORCESTER COUNTY, MASSACHUSETTS, OVER 34 YEARS PERIOD

The forest in Massachusetts has changed since the earliest colonial settlement and today the floristic composition is more homogeneous. This study investigates the potential change in the floristic composition over thirty years in Worcester County State Forests. Shannon, richness and evenness indices for two periods were compared, and Jaccard index was used to analyze similarity in composition between the periods. The possible influence of severe weather events was also analyzed.

It was found Changes in the floristic composition, but the magnitude of the changes …

The Use Versus Availability Of Wood Extraction At The Baga Ii Forest Reserve Border Adjacent To Kizanda Village In The West Usambara Mountains, Tanzania, Rebecca Halter

Independent Study Project (ISP) Collection

Tropical forests, especially in developing countries, continue to face serious threats of deforestation due to human pressures and poor management. These forests are at risk of disappearing and taking their water catchment and ecosystem services with them. Kizanda Villagers’ illegal woodfuel and polewood extraction poses a threat to the future health and existence of the Baga II Forest. This study, conducted from April 5th to April 19th, 2016, aimed to examine the use versus availability of tree species along the forest border. Twenty disturbance transects, each 4 meters wide, were conducted perpendicular to the Baga II forest border. The transects …

Bottom-Up Ggm Algorithm For Constructing Multilayered Hierarchical Gene Regulatory Networks That Govern Biological Pathways Or Processes, Sapna Kupari, Wenping Deng, Chathura J. Gunasekara, Vincent Chiang, Huann-Sheng Chen, Hairong Wei, Et. Al.

Michigan Tech Publications, Part 1

Background: Multilayered hierarchical gene regulatory networks (ML-hGRNs) are very important for understanding genetics regulation of biological pathways. However, there are currently no computational algorithms available for directly building ML-hGRNs that regulate biological pathways.

Results: A bottom-up graphic Gaussian model (GGM) algorithm was developed for constructing ML-hGRN operating above a biological pathway using small- to medium-sized microarray or RNA-seq data sets. The algorithm first placed genes of a pathway at the bottom layer and began to construct an ML-hGRN by evaluating all combined triple genes: two pathway genes and one regulatory gene. The algorithm retained all triple genes where a regulatory …

Agroforestry Horizons: Experiences And Reflections: Report-Out, Steve Rasmussen

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

The USDA National Agroforestry Center (NAC) is charting a course for the next five years. As part of this process, NAC and the USDA Interagency Agroforestry Team hosted a meeting of leaders in the fields of agroforestry, agriculture, and forestry, from government, universities, and the private sector, to share experiences and insights on agroforestry opportunities and challenges. The meeting occurred on April 27th and 28th, 2016, in Washington, DC, and entailed presentations and discussions on current and potential roles of agroforestry in supporting water quality, soil health, economic diversification, food security, and pollinator/wildlife habitat. This report-out provides a summary of …