Terrestrial and Aquatic Ecology Commons^™

Comparing Awssi And Traditional Winter Metrics For Predicting Overwinter Survival Of Juvenile Walleye (Sander Vitreus), Camille N. Shifrin

Honors Program: Senior Projects (Public)

Winter conditions are an important driver of recruitment variability in freshwater fishes, yet winter severity is often characterized using single climate metrics. These simplified approaches may not capture the cumulative stress experienced by fishes during winter. The Accumulated Winter Season Severity Index (AWSSI) integrates multiple components of winter climate and may therefore provide a more biologically relevant indicator of overwinter survival. In this study, we compared AWSSI with traditional winter severity metrics to explain interannual variation in overwinter survival of juvenile Walleye (Sander vitreus) in Harlan County Reservoir, Nebraska. Model comparisons using Akaike’s Information Criterion (AIC) indicated that …

Mapping Coastal Vegetation To Evaluate Salt Marsh Decline From 2016 To 2025 In South Carolina, Usa, Zak Henry Bartholomew

Theses, Dissertations and Capstones

Accelerating sea-level rise and storm surge events pose a substantial threat to salt marsh ecosystems, which provide critical ecosystem services. Classification and mapping of coastal vegetation through remote sensing can identify marsh dieback events and provide spatial context for patterns of marsh vulnerability. We used a multi-sensor approach that incorporated LiDAR data, multispectral imagery, and field-derived cover estimates to classify Spartina alterniflora (smooth cordgrass) dominated marsh types on Marine Corps Recruit Depot Parris Island (MCRDPI), a sea island in South Carolina, USA. In summer 2025, surveys were conducted within marsh classes to collect training and validation data. We used random …

Modeling Upper Ocean Ecosystem Dynamics In Response To Interannual Sea-Ice Variability In The Western Antarctic Peninsula, Catherine R. Czajka, Jessica S. Turner, Sharon Stammerjohn, Heather H. Kim, Oscar Schofield, Benjamin T. Saenz, Scott C. Doney

OES Faculty Publications

In the Western Antarctic Peninsula (WAP), marine plankton dynamics are tightly linked to the interannual variability in environmental conditions, including phenological shifts in sea-ice seasonality. To explore these linkages, we use a 1-dimensional vertical ocean-ice-ecosystem model (KPP-Eco-Ice, or KEI) that simulates physical and ecosystem conditions at a continental shelf mooring location in the Palmer Long Term Ecological Research program sampling grid. KEI allows for year-round examination of the ecosystem in a region where in situ observations on the shelf are limited to January. Comparisons are made between seasonal sea-ice retreat, mixed layer depth, primary productivity, and phytoplankton relative abundance, grazing, …

Aquatic Macrophytes As Nature-Based Solutions: Challenges And Opportunities Across Inland And Coastal Waters, Morgan Botrel, Roxane Maranger, Lindsay L. Trottier, Mathieu Cusson, Lars L. Iverson, Fanny Noisette, Christian Nozais, Katrine Turgeon, Andrea Bertolo, Thibaud André-Alphonse, Simon Bélanger, Arthur De Grandpré, Jean-Olivier Goyette, Sabine Hilt, Ladd Johnson, Valérie Langlois, Martin Laporte, Félix Lauzon, Brigitte Légaré, Anne Ola, Marie-Pomme Presne-Poissant, Matthieu Prugne, Caroline Susini, Richard Zimmerman

OES Faculty Publications

Macrophytes are foundation species whose use as nature-based solution (NbS) in aquatic ecosystems can help reduce climate change impacts while mitigating biodiversity loss. The discrepancy in research and application of macrophytes as NbS across inland and marine coastal ecosystems is an opportunity to expand the concept and learn from different approaches. We report on an initiative uniting marine and freshwater scientists that compared knowledge on macrophytes as NbS across realms, identified advances and gaps in their use, and synthesized challenges and opportunities for application. We conducted a bibliometric analysis and an expert participatory exercise around recent review papers. We reveal …

Indigenizing Aquaculture: In Pursuit Of An Integrated Multi-Trophic Aquaculture System For Enhanced Self-Sufficiency In Akaroa Harbour, Aotearoa New Zealand, Cali R. Trainor

Capstone Collection

This study assessed the feasibility of integrating two pre-existing aquaculture activities in Akaroa Harbour, Aotearoa New Zealand into an integrated multi-trophic aquaculture (IMTA) system. The cultivation of giant kelp (Macrocystis pyrifera) presents an opportunity to improve the sustainability of Chinook salmon (Oncorhynchus tshawytscha) farming by introducing alternative food sources for salmon, which can be used to produce fish feed locally, enhancing the self-sufficiency of the community and boosting the holistic efficiency of the system. Macroinvertebrates residing in giant kelp wrack were collected, identified, and quantified to determine if any of the Macrocystis-associated specimens could serve as …

Margalefidinium Polykrikoides Group Iii Va, Usa Strain Growth And Sac-Like Pellicle Cyst Dynamics, Eduardo Pérez Vega

OES Theses and Dissertations

Margalefidinium polykrikoides is a harmful cosmopolitan dinoflagellate that blooms in coastal waters. The effect of temperature and salinity on the growth of M. polykrikoides VA strain was examined using microscopy and growth models. M. polykrikoides Group III VA strain grew better at warmer temperatures and lower salinities than M. polykrikoides Group III NY strain, Group I Korea strain, and Japan strain (unknown group). Modelers need to use the temperature and salinity growth responses from M. polykrikoides Group III VA strain to better simulate and predict M. polykrikoides blooms in the Chesapeake Bay.

Dinoflagellates produce cysts as a strategy to withstand …

Tree Rings And The Broader Ocean-Atmospheric Circulation In The Highland Himalayas, Sanjaya Bhandari

All-Inclusive List of Electronic Theses and Dissertations

Climate change has altered tree-growth patterns and resulted in higher sea-surface temperatures across the planet. The Himalayan biome is one of the most vulnerable areas in the world to climate change because it has caused changes in forests’ growth and glaciers’ retreat. Dendrochronology has been used to understand the impact of climate change on tree growth and for climate reconstruction. In this dissertation, I discuss the growth of trees in the highlands of the eastern, central, and western Himalayas for the last 500 years and relate these patterns to the present global warming scenario and broad-scale climate modes. I reconstructed …

Monitoring Mangrove Dynamics And Evaluating Future Afforestation Potential In The Egyptian Red Sea, Rasha M. Abou Samra, Mansour Almazroui, Wenzhao Li, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Mangrove forests are vital for ecosystem services and coastal management but face stressors from anthropogenic activities and climate change. This study estimates the extent and afforestation potential of mangroves along the Egyptian Red Sea coast from 1984 to 2022 using NDVI derived from Landsat-5 and Sentinel-2 data in Google Earth Engine. Aboveground biomass (AGB), belowground biomass (BGB), carbon (C) stock, and CO₂ sequestration potential were evaluated using Sentinel-2 and elevation data. Future afforestation suitability (2020–2050) under SSP2-4.5 and SSP5-8.5 scenarios was assessed with the MaxEnt model. Mangrove area increased from 0.95 km² in 1984 to 1.46 km^{2 …}

Variation In Thermal Tolerance Plasticity And The Costs Of Heat Exposure In The Estuarine Sea Hare, Phyllaplysia Taylori, Richelle L. Tanner, Rauri C. K. Bowie, Cynthia Y. Wang-Claypool, Jonathan H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Climate change is increasing average temperatures and the frequency and intensity of thermal extremes in coastal marine environments. Organisms in coastal marine habitats are accustomed to environmental fluctuations and possess physiological plasticity that may be advantageous in response to increased occurrence of extremes. To examine whether such plasticity is locally adapted to environmental conditions, we investigated the relationship between genetic diversity and thermal tolerance plasticity in 11 populations of the direct-developing intertidal sea hare, Phyllaplysia taylori, on the western coast of the United States. Using whole-organism metrics of muscle function and metabolic rate and a ddRADseq genomic approach, we …

Selective Nutrient Incorporation May Underestimate Heterotrophy Of A Mixotrophic Reef-Building Coral, Connor R. Love, Marleen Stuhr, Michael D. Fox, Veronica Z. Radice, Maoz Fine, Kelton W. Mcmahon, David L. Valentine

Biological Sciences Faculty Publications

Mixotrophic reef-building corals acquire nutrition via photosynthate translocation from endosymbiotic microalgae and by heterotrophic prey/particle capture. Heterotrophy promotes resistance to, and recovery from, environmental stress, but quantifying coral heterotrophy remains difficult due to complex resource exchanges within the coral holobiont. We interrogated the response of multiple biomarkers to coral heterotrophy using fatty acid profiling and stable isotope analysis of Stylophora pistillata grown along a controlled feeding gradient from pure autotrophy to pure heterotrophy. We found that fatty acids and nitrogen were effectively incorporated into both coral host and symbiont tissues, while carbon, which is the primary target for conventional heterotrophy …

The Future Of Shipping At The Biodiversity-Climate Nexus : Round Table Report, Mary S. Wisz, Fabio Berzaghi, Mikaela Gomez, Maud C. Quinzin, Renis Auma Ojwala, Emily Nuckolls

Reports

This report presents the outcomes of a cross-disciplinary Round Table hosted by the World Maritime University (WMU) from May 13-15, 2024, in Malmö, Sweden. The event brought together 51 experts from academia, industry, NGOs, and international organizations, including the IMO, to explore shipping’s role at the biodiversity-climate nexus. The Round Table had a particular focus on the impacts of shipping that are currently unregulated or under-regulated, and opportunities to address biodiversity loss and pollution as the sector decarbonizes. The report highlights the need to apply comprehensive, ecosystem-based approaches to effectively manage shipping's impacts, including cumulative impacts, on the environment, people, …

Dam It All: A Multi-Scalar Investigation Into The Ecological Role And Function Of Beaver Dams, Kenneth Larsen

Dissertations, Master's Theses and Master's Reports

The central theme of this dissertation is ecological scaling, which examines how small, localized features, such as beaver ponds, contribute to large-scale watershed processes and how different modeling approaches at various scales reveal distinct insights. Through a combination of probabilistic modeling and high-resolution empirical research, this work demonstrates that small ponded systems, particularly those created by beavers (Castor canadensis), serve as critical biogeochemical control points, whose contributions to sediment and nutrient dynamics have been historically underestimated.

In Chapter 1, I contextualize this research within the broader fields of freshwater ecology, watershed modeling, and ecological restoration. I introduce the …

Noaa Oceanic And Atmospheric Research Ocean Carbon Observing Science Plan Fy25 To Fy35, United States National Oceanographic And Atmospheric Administration

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

United States National Oceanographic and Atmospheric Administration oceanic and atmospheric research ocean carbon observing science plan for fiscal years 2025 through 2035.

High Temporal Resolution Gene Expression Analysis Of Acute Heat Stress Response In Acropora Cervicornis And Porites Astreoides, Katherine Parker, Nicolas Evensen, Iliana Baums, Daniel Barshis

Biological Sciences Faculty Publications

Widespread coral bleaching and mortality events are becoming increasingly frequent due to rising ocean temperatures, though certain coral species and populations have displayed higher tolerance to elevated emperatures than others. As such, it is of high research priority to identify thermally tolerant coral populations for research and conservation and assess the biological mechanisms allowing these populations to survive exposure to higher temperatures. This research utilized the Coral Bleaching Automated Stress System (CBASS), a portable experimental aquaria system with precise temperature manipulation, to assess the thermal thresholds and heat stress response of two coral species from Summerland Key, FL, USA. Seven …

The Δ¹³C Signature Of Dissolved Organic And Inorganic Carbon Reveals Complex Carbon Transformations Within A Salt Marsh, Meagan J. Eagle, Kevin D. Kroeger, John W. Pohlman, Joseph J. Tamborski, Zhaohui Aleck Wang, T. W. Brooks, Jennifer O. Keefe Suttles, Adrian Mann

OES Faculty Publications

Coastal wetlands have high rates of atmospheric CO₂ uptake, which is subsequently respired back to the atmosphere, stored as organic matter within flooded, anoxic soils, or exported to the coastal ocean. Transformation of fixed carbon occurs through a variety of subsurface aerobic and anaerobic microbial processes, and results in a large inventory of dissolved carbon. Carbon source and the roles of aerobic respiration, sulfate reduction, and methane cycling were evaluated within salt marsh peat and the underlying sandy subterranean estuary. There is a large increase in dissolved inorganic carbon (DIC, 7,350 ± 3,900 μmol L^-¹), dissolved organic carbon …

A Century Of Sediment Metal Contamination Of Mar Menor, Europe's Largest Saltwater Lagoon, Irene Alorda-Montiel, Valentí Rodellas, Ariane Arias-Ortiz, Albert Palanques, Andrea G. Bravo, Júlia Rodriguez-Puig, Aaron Alorda-Kleinglass, Carlos Green-Ruiz, Marc Diego-Feliu, Pere Masqué, Javier Gilabert, Jordi Garcia-Orellana

OES Faculty Publications

Coastal enclosed ecosystems, such as lagoons, are vulnerable to anthropogenic impacts because they favor the accumulation of contaminants from the surrounding watersheds, particularly in their sediments. Europe's largest saltwater lagoon, the Mar Menor (SE, Iberian Peninsula), is a highly impacted ecosystem and the first in the continent to be granted personhood rights. Based on a high-resolution spatial and temporal dataset, we present the historical reconstruction of metal contamination in this ecosystem during the last century. Our results highlight that sediment metal contamination has been mainly driven by the development of the mining industry in the nearby Sierra Minera de Cartagena-La …

Invasion Stress Mitigates Climate Stress In A Brackish Marsh Amphipod, Lorna E. Haworth, Sarah Nancollas, Susie N. Landa, Anne E. Todgham, Richelle L. Tanner

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

1. Organisms in coastal brackish ecosystems face not only highly variable environmental conditions, but the intensity and stochasticity of these environmental conditions are anticipated to increase due to climate change. While environmental changes are often presented unilaterally as stressors, there are some anthropogenic environmental transformations, such as the introduction of habitat forming plant species, that may mitigate physiological stress imposed by warming. In Suisun Marsh in the California Delta, native plant canopies allow light and heat to penetrate to the understory yet the canopies of the introduced Phragmites australis reed block out sunlight and heat for organisms living below.
2. We set …

Spatiotemporal Patterns In Orbicella Faveolata Wound Regeneration As An Indicator Of Colony Health, Alexander G. Wheeler

All HCAS Student Capstones, Theses, and Dissertations

Anthropogenic (e.g. damage from anchors, scuba divers, tissue sampling) and natural disturbances (e.g. predation, storm damage) can result in wounding of live tissue on coral colonies. Wounding has been shown to detract from a common resource pool, increasing disease susceptibility and impairing coral growth and reproductive activity. Regeneration not only varies between species, but also between conspecifics in the same location. A colony’s capacity to regenerate tissue can be an indicator of a colony’s condition and resilience. Understanding the physiological and environmental factors that affect tissue regeneration alongside the ultimate impact of sampling (disease and predation correlations) are needed for …

Comparing Metabolism And Hypoxia Tolerance Of Native And Non-Native Florida Freshwater Fishes In Climate Change Scenarios, Benjamin A. Share

All HCAS Student Capstones, Theses, and Dissertations

As climate change brings rising water temperatures and lower dissolved oxygen (DO) concentrations to freshwater bodies, it has become increasingly important to understand how this will affect ecosystems with established non-native or invasive species. Fishes of the family Cichlidae are the most pervasive non-native fishes in the Everglades and may increase their range further north under a changing climate. To better understand potential invasibility and competition with native fishes, the metabolism and hypoxia tolerance of non-native Blue Tilapia Oreochromis aureus was compared to native Bluegill Lepomis macrochirus when acclimated across a range of seasonal and projected temperatures. Intermittent-flow respirometry was …

Investigating Nekton Response To Changing Salinities In The Mississippi Sound: An Experimental And Statistical Approach, Adam Murray

Master's Theses

The Mississippi Sound provides nursery habitats for many coastal species and is recognized for its commercial fisheries. Previous freshening events linked to the Bonnet Carré Spillway, a Mississippi River flood diversion structure, proved catastrophic for oyster populations in the Mississippi Sound, but effects on mobile fish and shellfish species are not well-defined. The planned Mid-Breton Sediment Diversion (MBSD), an initiative to combat wetland loss, is also forecasted to lower salinities in the region, increasing the need to better understand responses of commercially and ecologically important species to freshening events. The objective of this study was to characterize effects of salinity …

Time Series Decomposition Of Land Surface Temperature For Long-Term Trend Forecasting And Impact On Nesting Sea Turtle Habitats In The Arabian Gulf, Sachi Perera, Rommel H. Maneja, Mohamed Allali, Cyril Rakovski, Erik Linstead, Daniele Struppa, Ali Qasem, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Improving land surface temperature (LST) modeling is vital for mitigating climate change effects on various ecosystems and marine habitats such as important sea turtle habitats. Over the past decade, extreme temperatures have likely significantly affected nesting sea turtle habitats in the Arabian Gulf, with predominantly female hatchlings creating an imbalance in the sex ratio. Such shifts have profound implications for these habitats’ long-term survival and conservation management. This study leverages statistical machine learning models to measure ongoing temporal variations in LST. We break down the LST time series into trend, seasonal, and noise components using classical decomposition methods like X11, …

Effects Of Microplastic Biofilms On An Anthropogenically Impacted Suburban Lake, Paris M. Velasquez

Masters Theses

Plastics have been observed in every location on the planet, and their prevalence in the environment is due in part to their strong resistance to degradation. Inland lakes are susceptible to plastic pollution by highway runoff, which contains plastic fragments of brake pads, car tires, litter, and road paint. These plastics eventually enter freshwater environments and degrade into microplastics (

High Mountain Ecosystems And Snow Cover In A Changing Climate: For Better Or For Worse, Philippe Choler

FRONTIERS UNBOUND: Exploring Extreme Environments

No abstract provided.

Microplastic Accumulation In The Marsh Periwinkle (Littoraria Irrorata), Sarah Keaton, Hannah Lukhard, Eli Windy, Manar Hasan

DePaul Discoveries

Contamination of oceans by microplastics (mm) currently poses a major threat to aquatic and terrestrial ecosystems worldwide. Recent attention towards this issue has raised questions about the extent to which microplastics have accumulated in the environment, and has led to an increase in studies on the effects of microplastics in various organisms. However, levels of contamination in protected natural areas are still largely unexplored, yet can offer an important empirical perspective on the issue. In addition, little is known about the potential effects of microplastics on behavior in the field. This research was conducted within the protected ACE Basin National …

Consequences Of The Megafauna Extinction: Changes In Food Web Networks On The Edwards Plateau Across The Pleistocene-Holocene Transition, Quentin A. Smith Jr.

School of Biological Sciences: Dissertations, Theses, and Student Research

We are experiencing biodiversity loss due to climate change and human impacts, which is not only harmful to the environment but can also alter the composition of communities and interactions among species. The late Pleistocene experienced a loss of large-bodied mammals which resulted in significant changes in community structure due to changes in body size, diet, and species associations. The impact of these changes on species interactions and community structure across the Pleistocene-Holocene transition remains poorly understood. Using a robust data set of species composition, stable isotopes, body size, and climate variables, we constructed and compared ecological networks of mammal …

Evaluating Novel Approaches For Improving Anadromous Fish Passage In Coastal Rivers, Aaron Bunch

All Dissertations

Few of the world's rivers remain free-flowing for over 1000 km, significantly impacting anadromous fish populations due to dam-induced habitat fragmentation. Three partial migration barriers (low-head dams) on North Carolina's Cape Fear River (USA)—lock and dam 1 (LD1), lock and dam 2 (LD2), and lock and dam 3 (LD3)—impact American shad Alosa sapidissima, Atlantic sturgeon Acipenser oxyrinchus oxyrinchus, and striped bass Morone saxatilis populations. Mitigation strategies to pass fish upstream have included conservation locking, nature-like fishway construction, and environmental flows (e-flows). This study introduced a novel e-flow (dam submergence flow), tested acoustic double-tagging techniques for tracking American …

Assessing The Impacts Of Anthropogenic Activities On Coral Reef Health In Ushongo, Tanzania Using Coral Diversity And Parrotfish Abundance As Indicators, Thao Mai

Independent Study Project (ISP) Collection

Coral reefs, covering two-thirds of our oceans, are vital and diverse ecosystems, earning them the nickname of “rainforests of the sea”. Despite occupying only 1% of the ocean’s floor, they support 25% of all marine species, providing shelter, nursery ground and food, all the while also protecting the coast and providing job opportunities for local communities. Considered keystone species, coral reefs are highly sensitive to disturbances caused by pollution, climate change, but also anthropogenic activities such as coastal development, destructive fishing practices and tourism, endangering their existence and the entire marine ecosystem. Parrotfish, a crucial resident of these ecosystems, often …

Early Report Of A Microcosm Of The Fourth Major Global Bleaching Event: A Comprehensive Survey Of Coral Bleaching At Chumbe Island Coral Park, Zanzibar, Christian Boudreaux

Independent Study Project (ISP) Collection

Coral reefs harbor a wealth of the biodiversity present in the ocean. They provide an array of ecological and economic services that make them crucial to the function of a healthy ocean and prosperous coastal communities. Due to an array of anthropogenic stressors, including an increase in ocean temperatures as a result of climate change, reefs have been devastated worldwide. This is, in large part, due to the process of coral bleaching, the expelling of symbiont algae which the coral needs to produce energy, for an extended period until death. This study surveyed bleaching and death at a deeper and …

Feasibility Study Of Coral Farming In Southwest Madagascar: In-Situ And Ex-Situ Approaches, Raquel Reis

Independent Study Project (ISP) Collection

The southwest coast of Madagascar is home to hundreds of miles of coral reefs that for decades have been susceptible to intense degradation due to anthropogenic influences on marine environments. For reasons involving economic opportunity, conservation strategies, human health safeguarding and advancements to coral research, coral aquaculture in the Toliara region presents an opportunity to restore quality of life and the environment. Other countries in the west Indian ocean have seen great success in coral aquaculture; however, Madagascar, despite having ideal natural circumstances, has not deeply explored coral aquaculture. This review presents an investigation into the feasibility of coral farming, …

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …