Population Biology Commons^™

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Distribution, Abundance, And Migration Timing Of Greater And Lesser Sandhill Cranes Wintering In The Sacramento-San Joaquin River Delta Region Of California, Gary L. Ivey, Bruce D. Dugger, Caroline P. Herziger, Michael L. Casazza, Joseph P. Fleskes

Proceedings of the North American Crane Workshop

The Sacramento-San Joaquin River Delta region of California (hereafter, Delta region) is an important wintering region for the Central Valley Population of greater sandhill cranes (Grus canadensis tabida) and lesser sandhill cranes (G. c. canadensis), but basic information about the ecology of these birds is lacking to design a biologically sound conservation strategy. During the winters of 2007-08 and 2008-09, we conducted roost counts, roadside surveys, aerial surveys, and tracked radio-marked birds to define the geographic area used by sandhill cranes in the Delta region, document migration chronology, and estimate subspecies-specific abundance. Radio-marked sandhill cranes arrived in our study area …

First Occurrence Of The Invasive Hydrozoan Gonionemus Vertens A. Agassiz, 1862 (Cnidaria: Hydrozoa) In New Jersey, Usa, John J. Gaynor, Paul A.X. Bologna, Dena J. Restaino, Christie Barry

Department of Biology Faculty Scholarship and Creative Works

Gonionemus vertens A. Agassiz, 1862 is a small hydrozoan native to the Pacific Ocean. It has become established in the northern and southern Atlantic Ocean as well as the Mediterranean Sea. We report on the first occurrence of this species in estuaries in New Jersey, USA,and confirm species identification through molecular sequence analysis. Given the large number of individuals collected, we contend that this is a successful invasion into this region with established polyps. The remaining question is the vector and source of these newly established populations.

Improving Conservation Efforts Through A Better Understanding Of Forest Elephant Ecology, The Impacts Of Threats On Elephants And Freshwater Fisheries In Northern Congo, Roger Patrick Boundja

Doctoral Dissertations

IMPROVING CONSERVATION EFFORTS THROUGH A BETTER UNDERSTANDING OF FOREST ELEPHANT ECOLOGY, THE IMPACTS OF THREATS ON ELEPHANTS AND FRESHWATER FISHERIES IN NORTHERN SEPTEMBER 2016 ROGER PATRICK BOUNDJA, B.Sc. FORESTRY, MARIEN NGOUABI UNIVERSITY, BRAZZAVILLE MSc. UNIVERSITY OF CAPE TOWN PhD. UNIVERSITY OF MASSACHUSETTS AMHERST Directed by: Professor Curtice R. Griffin Catch data, including fish numbers, length-weight were collected during a multi-mesh Gillnet fisheries-independent survey in 2007-2008, and fisheries-dependent mixed gear surveys in 2009-2010 and 2015 across 400km stretch of the Sangha River located in the Sangha Tri-National. Overall, very high species richness (Chao 2 mean=250, SD=16.15) and diversity index (Simpson Inverse …

Monk Parakeets, Michael L. Avery, James R. Lindsay

Wildlife Damage Management Technical Series

Since their introduction to the United States in the 1960s, monk parakeets (Myiopsitta monachus) have thrived (Figure 1). Until recently, annual Christmas Bird Count data have shown the population to be increasing exponentially. In the U.S., monk parakeets are an urban and suburban species with few natural predators, diseases or other factors limiting their population growth. They exploit backyard bird feeders and non-native ornamental plants for food. Monk parakeets often construct nests on man-made structures, such as electric utility facilities and cell phone towers. Because the birds build and maintain nests throughout the year, management of parakeet populations …

Cedar Waxwings, Michael L. Avery, Anthony G. Duffiney

Wildlife Damage Management Technical Series

Prevention and control of cedar waxwing (Bombycilla cedrorum) damage to small fruits such as blueberry, cherry, and strawberry is vexing to growers in many parts of the United States. Cedar waxwings (Figure 1) travel in flocks and descend in large numbers on berry crops, especially during winter and migration. In short feeding bouts, waxwings eat, peck, or knock substantial amounts of fruit from the plants. These frugivores are difficult to discourage once they become established at a given location. Harassment early and often using pyrotechnics or other sudden noisemakers can help prevent flocks from being established. The most effective preventative …

Vultures, Michael L. Avery, Martin S. Lowney

Wildlife Damage Management Technical Series

Black and turkey vultures cause problems in several ways. The most common problems associated with vultures are structural damage, loss of aesthetic value and property use related to offensive odors and appearance, depredation to livestock and pets, and air traffic safety. Management of these diverse problems often can be addressed by targeting the source of the birds causing the problem, namely the roost where the birds spend the night. Often the roost itself is the problem, such as when birds roost on a communication tower and foul the equipment with their feces or when they roost in a residential area. …

Population Characteristics Of Human-Commensal Rodents Present In Households From Mérida, Yucatán, México, Jesús Alonso Panti-May, Silvia F. Hernández-Betancourt, Marco A. Torres-Castro, Carlos Machaín-Williams, Nohemi Cigarroa-Toledo, Lorenzo Sodá, Gabriela López-Manzanero, Josué R. Meza-Sulú, Victor M. Vidal-Martínez

MANTER: Journal of Parasite Biodiversity

Anthropocommensal rodents live in close proximity to humans in many habitats around the world. They are a threat to public health because of the pathogens they carry. Recent studies in Mérida, Yucatán, México, have shown that commensal rodents harbor potential zoonotic pathogens such as bacteria, helminths, and viruses. In this study, we describe reproductive and demographic parameters of house mice and black rats present in households from Mérida, Yucatán, México, a municipality located in a tropical region in southern México. Rodents were trapped in 142 households within the municipality of Mérida from 2011 to 2014. A total of 832 rodents …

Bird Dispersal Techniques, Thomas W. Seamans, Allen L. Gosser

Wildlife Damage Management Technical Series

Conflicts between humans and birds likely have existed since agricultural practices began. Paintings from ancient Greek, Egyptian, and Roman civilizations depict birds attacking crops. In Great Britain, recording of efforts at reducing bird damage began in the 1400s, with books on bird control written in the 1600s. Even so, the problem persists. Avian damage to crops remains an issue today, but we also are concerned with damage to homes, businesses, and aircraft, and the possibility of disease transmission from birds to humans or livestock. Successful dispersal techniques should capitalize on bird sensory capabilities. If birds cannot perceive the dispersal technique, …

Geese, Ducks And Coots, John L. Cummings

Wildlife Damage Management Technical Series

Canada geese, snow geese, ducks, and American coots all have been implicated in agricultural crop and turf damage. Canada geese and snow geese that graze on winter wheat and rye crops can reduce subsequent grain and vegetative yields. Canada geese also cause serious damage to sprouting soybeans in spring and to standing cornfields in the autumn. The most common damage to agricultural resources associated with geese results from consumption of crops. Other impacts involve unacceptable accumulations of feces in pastures, trampling of emerging crops, and increased erosion and runoff from fields where the cover crop has been grazed. Canada geese …

Double-Crested Cormorants, Brian S. Dorr, Kristi L. Sullivan, Paul D. Curtis, Richard Chipman, Russell D. Mccullough

Wildlife Damage Management Technical Series

The history of conflict between double-crested cormorants (Figure 1) and human interest in fisheries is long and convoluted. Following a low point in the 1970s, populations of cormorants expanded in North America, as did concerns about impacts on fisheries. By the late 1990s, natural resource agencies in 27 states reported losses of free-ranging fish stocks to cormorants. Agencies in 10 states, ranging from the Southwest to the Northeast, considered cormorant predation to be of moderate to major concern to fishery management.

Overall, double-crested cormorants are not major consumers of commercial and sportfish species. However, exceptions have been recorded at specific …

Blackbirds, Richard A. Dolbeer, George M. Linz

Wildlife Damage Management Technical Series

The term blackbird loosely refers to a diverse group of about 10 species of North American birds that belong to the avian family Icteridae. The most common species include: Red-winged blackbird (Agelaius phoeniceus) Common grackle (Quiscalus quiscula) Great-tailed grackle (Quiscalus mexicanus) Brown-headed cowbird (Molothrus ater) Yellow-headed blackbird (Xanthocephalus xanthocephalus) Brewer’s blackbird (Euphagus cyanocephalus) Rusty blackbird (Euphagus carolinus) In addition to blackbirds, this family includes orioles, meadowlarks, and bobolinks.

Human-Wildlife Conflicts 1 Damage Identification 3 Management Methods 4 Economics 7 Species Overview 8 Legal Status 11 Glossary …

The Maintenance Of Phenotypic Divergence Through Sexual Selection: An Experimental Study In Barn Swallows Hirundo Rustica, Rebecca Safran, Yoni Vortman, Brittany R. Jenkins, Joanna K. Hubbard, Matt Wilkins, Rachel J. Bradley, Arnon Lotem

School of Biological Sciences: Faculty Publications

Previous studies have shown that sexual signals can rapidly diverge among closely related species. However, we lack experimental studies to demonstrate that differences in trait-associated reproductive performance maintain sexual trait differences between closely related populations, in support for a role of sexual selection in speciation. Populations of Northern Hemisphere distributed barn swallows Hirundo rustica are closely related, yet differ in two plumage-based traits: ventral color and length of the outermost tail feathers (streamers). Here we provide experimental evidence that manipulations of these traits result in different reproductive consequences in two subspecies of barn swallow: (H. r. erythrogaster in North …

Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline

STAR Program Research Presentations

The Monterey Bay Aquarium Research Institute routinely deploys remotely operated underwater vehicles equipped with high definition cameras for use in scientific studies. Utilizing a video collection of over 22,000 hours and the Video Annotation and Reference System, we have set out to automate the detection and classification of deep-sea animals. This paper serves to explore the pitfalls of automation and suggest possible solutions to automated detection in diverse ecosystems with varying field conditions. Detection was tested using a saliency-based neuromorphic selective attention algorithm. The animals that were not detected were then used to tune saliency parameters. Once objects are detected, …

Effect Of The 2013-2015 California Drought On Small Mammal Abundance And Diversity In Chaparral, Oak Woodland And Riparian Habitats, Nicole Desideri

Biological Sciences

Long-term biodiversity surveys are a useful tool for assessing the impacts of stochastic events on wildlife and their communities. A recent stochastic event to affect the state of California is the historic 2013-2015 drought. This drought, described as a one-in-one-thousand year event, brought precipitation to a historic low; the statewide rainfall reaching 34% below average (Swain et al. 2014). While humans are feeling the impact of this water shortage, the effects on native ecosystems and wildlife populations are poorly documented. Baseline small mammal biodiversity data collected in 2011, before the drought, allows us the opportunity to study the impacts of …

Tropical Trees As Islands: Diversity Accumulation Of Armored Scale Insects (Hemiptera: Diaspididae) On Trees As A Function Of Forest Age, Hannah Shapiro

Undergraduate Honors Theses

Armored scale insects (Hemiptera: Diaspididae) are some of the most invasive insects in the world. These cryptic plant parasites are most often encountered in managed agricultural ecosystems, but very little is known about their distribution, abundance, and diversity in tropical rainforest canopies, where they are likely to have their highest diversity. Because these ubiquitous insects are extreme generalists with undirected dispersal, their diversity (alpha and beta) accumulation can conceivably be modeled according to tenets derived from island biogeography theory. For example, one expectation is that older established trees should boast a higher species diversity and abundance than younger ones. Other …

The Origin And Expansion Of The Eastern Red Fox, Adrienne Egge Kasprowicz

University of New Orleans Theses and Dissertations

When new populations are first identified in a region there are multiple potential sources: introduction of a non-native species, extra-range expansion of a nearby population, or demographic growth of a previously unnoticed species. Red foxes were absent or rare in the mid-eastern portion United States until the late 1800s. Their origins potentially include natural population increase/expansion, translocations from Europe, and, eventually, 20th century fur farming. In this study I attempt to identify the relative impact of native expansion versus human mediated introductions of both colonial era European foxes and early 20^th century fur-farm foxes on the establishment of red …

Estimating Avian Populations With Passive Acoustic Technology And Song Behavior, Stephanie C. Prevost

Masters Theses

The need for improvements in avian wildlife monitoring efficiency, accuracy, and scope has led to use of new technologies such as autonomous recording units (ARUs). As a monitoring tool, passive acoustic recording has numerous benefits, but it is still limited to use in human-accessible areas. There is also need for monitoring technologies in areas that are inaccessible. Military installations, which host a disproportionately large number of threatened, endangered, and at-risk species compared to other federal lands, pose the accessibility problem with sizeable impact areas that are too hazardous for humans to access. This thesis introduces the Balloon Aerial Recording System …

Urbanization Impacts On Land Snail Community Composition, Mackenzie N. Hodges

Masters Theses

Urbanization has tremendous impacts on most native species. Urban ecosystems are becoming increasingly prevalent, while urban ecology is a relatively underdeveloped field. This is especially true for terrestrial mollusks, which are a surprisingly understudied organism. Due to their low mobility and dispersal potential, land snails are valuable indicators of ecosystem disturbance. For this study, land snails were collected in 54 city parks along an urban gradient to understand influences of urbanization on snail communities. Sampled parks include small extensively landscaped downtown parks, neighborhood and community parks, district parks, and large nature parks, each with variable vegetation, soil characteristics, disturbance regimes, …

Reef Fish Spatial Distribution And Benthic Habitat Associations On The Southeast Florida Reef Tract, Dana Fisco

HCNSO Student Theses and Dissertations

The Florida Reef Tract (FRT) extends from the tropical Caribbean up the southeast coast of Florida into a temperate environment where tropical reef assemblages diminish with increasing latitude. This study used data from a three-year comprehensive fishery-independent survey to quantify reef fish spatial distribution along the Southeast FRT and define where the assemblage shifts from tropical to temperate. A total of 1,676 reef fish visual census samples were conducted to assess the populations on a stratified-random selection of sites of marine hardbottom habitats between the Miami River and St. Lucie inlet. Multivariate analyses were used to investigate differences in assemblages …

Diversity-Dependent Cladogenesis Throughout Western Mexico: Evolutionary Biogeography Of Rattlesnakes (Viperidae: Crotalinae: Crotalus And Sistrurus), Christopher Blair, Santiago Sánchez-Ramírez

Publications and Research

Rattlesnakes (Crotalus and Sistrurus) represent a radiation of approximately 42 species distributed throughout the New World from southern Canada to Argentina. Interest in this enigmatic group of snakes continues to accrue due, in part, to their ecomorphological diversity, contributions to global envenomations, and potential medicinal importance. Although the group has garnered substantial attention from systematists and evolutionary biologists for decades, little is still known regarding patterns of lineage diversification. In addition, few studies have statistically quantified broad-scale biogeographic patterns in rattlesnakes to ascertain how dispersal occurred throughout the New World, particularly among the different major biomes of the …

Acoustic Detection Reveals Fine-Scale Distributions Of Myotis Lucifugus, Myotis Septentrionalis, And Perimyotis Subflavus In Eastern Nebraska, Jeremy A. White, Cliff Lemen, Patricia Freeman

School of Natural Resources: Faculty Publications

ABSTRACT.—Before white-nose syndrome arrives in Nebraska, it is important to document the preexposure distributions of cave bats in the state. We examined the distributions of Myotis lucifugus (little brown myotis), Myotis septentrionalis (northern long-eared myotis), and Perimyotis subflavus (tri-colored bat) in eastern Nebraska by setting acoustic detectors for a single night at 105 sites in wooded habitats during summers of 2012 and 2014. We compared 2 methods of determining presence at each site. Results of our analyses are fine-scale distributional maps for these bats and some range extensions from published records. Results for M. septentrionalis and P. subflavus are largely …

Avifaunal Community Composition In A Tropical Forest Corridor: A Case Study From The Atherton Tableland, North Queensland, Don Jones

Independent Study Project (ISP) Collection

Bird communities in tropical forest ecosystems are highly threatened by habitat loss and fragmentation. Replanted corridors connecting isolated forest remnants are a popular method of ameliorating certain negative impacts of habitat fragmentation. Such linkages can theoretically facilitate greater dispersal, increase gene flow, and reduce the risk of local extinctions in forest birds. However, relatively few studies have examined the utilization of reforested corridors by birds, and little hard data exists to support claims that this type of resource and time intensive project is the best use of often scarce funding for conservation. This study examined the avifaunal community present in …

Population Genetic Divergence Of Isle Royale Pearl Dace, Margarita Margariscus (Cyprinidae)., John F. Elder Jr., Jack R. Martin, Isaac J. Schlosser, Larry Kallemeyn

Georgia Journal of Science

In 1949, Hubbs and Lagler described morphological variation among pearl dace (Margariscus margarita) of inland lakes on Isle Royale, Michigan. For Harvey Lake, Hubbs and Lagler, proposed that pearl dace were sufficiently morphologically distinct to warrant subspecific status. They argued that divergence of the Harvey Lake pearl dace was due to allopatric differentiation in isolation from lower elevation lakes. Harvey Lake has been isolated by elevation from lower elevation lakes for approximately 10 to 15 thousand years. No genetic studies have been done on Isle Royale pearl dace to evaluate this hypothesis to date. Here we report the analysis of …

High Genetic Diversity But Low Population Structure In The Frog Pseudopaludicola Falcipes (Hensel, 1867) (Amphibia, Anura) From The Pampas Of South America, José A. Langone, Arley Camargo, Rafael O. De Sá

Biology Faculty Publications

Relative to South America’s ecoregions, the temperate grasslands of the Pampas have been poorly studied from a phylogeographic perspective. Based on an intermediate biogeographic setting between subtropical forest (Atlantic Forest) and arid ecosystems (Chaco and Patagonia), Pampean species are expected to show unstable demographic histories due to the Quaternary climatic oscillations. Herein, we investigate the phylogenetic relatedness and phylogeographic history of Pseudopaludicola falcipes, a small and common frog that is widely distributed across the Pampean grasslands. First, we use molecular data to assess if P. falcipes represents a single or multiple, separately evolving cryptic lineages. Because P. falcipes is …

Comparative Population Genomics Of Latitudinal Variation In Drosophila Simulans And Drosophila Melanogaster, Heather E. Machado, Alan O. Bergland, Katherine R. O'Brien, Emily L. Behrman, Paul S. Schmidt, Dmitri A. Petrov

School of Biological Sciences: Faculty Publications

Examples of clinal variation in phenotypes and genotypes across latitudinal transects have served as important models for understanding how spatially varying selection and demographic forces shape variation within species. Here, we examine the selective and demographic contributions to latitudinal variation through the largest comparative genomic study to date of Drosophila simulans and Drosophila melanogaster, with genomic sequence data from 382 individual fruit flies, collected across a spatial transect of 19 degrees latitude and at multiple time points over 2 years. Consistent with phenotypic studies, we find less clinal variation in D. simulans than D. melanogaster, particularly for the autosomes. Moreover, …

Moss Composition Affects Seedling Density Of Western Hemlock And Sitka Spruce, Katy E. Maleta Ms.

Summer Research

Nurse logs at the Hoh National Forest represent a clear understanding of how important habitat heterogeneity is in old growth forests. Looking down a nurse log, you will find various moss species and debris along with seedlings being assisted in germination. By observation, there is an effect of moss composition on seedling density. We found that when moss depth increase, seedling density decreases. We also found that where the moss was the most thick, the moss species that was present was Hylocomium Splendens (Step Moss). We also found that when moss depth decreased, seedling density increased and the moss species …

Size Difference In Whooping Cranes Reared For Two Reintroduction Methods, Richard P. Urbanek, Marianne M. Wellington, Sabrina Servanty

Proceedings of the North American Crane Workshop

We investigated a possible size difference in whooping cranes (Grus americana) captive-reared for 2 reintroduction methods to establish a migratory population in eastern North America. Cranes reared for ultralight aircraft-led migration (UL) to Florida were significantly larger than cranes reared for direct autumn release (DAR) on the natal area in central Wisconsin. Mean tarsal length was 315.5 ± 0.98 (1 SE) and 308.1 ± 1.87 mm, respectively, for UL and DAR males and 296.9 ± 1.03 and 290.8 ± 2.60 mm, respectively, for UL and DAR females. Because of the different rearing schedules, eggs for the DAR method …

Winter And Migratory Habitat Use Of Six Eastern Greater Sandhill Cranes, Hillary L. Thompson, Anne E. Lacy

Proceedings of the North American Crane Workshop

To better understand non-breeding ecology of sandhill cranes (Grus canadensis tabida), we harnessed 6 satellite GPS transmitters to adult cranes from 1 central Wisconsin breeding area. Using location data from these transmitters, we investigated non-breeding movements, including the routes and timing of migration. By combining satellite GPS data with a national land cover dataset, we also described habitat use on stopovers and wintering areas. Sandhill cranes tended to use larger home ranges on long stopovers (>3 days) than on short stopovers (3 days or less). The durations of northward migrations were longer and had more stopovers than …

Serum Chemistry, Blood Gas, And Physiological Measures Of Sandhill Cranes Sedated With Alpha-Chloralose, Richard R. Sim, Barry K. Hartup

Proceedings of the North American Crane Workshop

Capture techniques that lessen handling stress may also lessen pathologic influences on physiologic measures, improving the validity of these measures for use in individual health assessment of freeranging wildlife. Since 1990, the International Crane Foundation (ICF) has successfully used chemical immobilization with alpha-chloralose (AC; C₆H₁₁Cl₃O₆), a chloral derivative of glucose, to facilitate captures of sandhill cranes (Grus canadensis tabida) for ecological studies (Hayes et al. 2003). Although this chemical has been used orally for the immobilization of many species, the physiologic effects of AC are not well understood in cranes. …