Population Biology Commons^™

Adaptation Reshapes The Distribution Of Fitness Effects, Diego Tenoch Morales Lopez

Electronic Thesis and Dissertation Repository

The process of adaptation has been of interest since the XIX century, when Darwin first proposed the idea of natural selection. Since then, there has been a myriad of theoretical and empirical works that have expanded the field. From the many evolutionary insights these works have produced, a foundational idea is that spontaneous mutations in the genome of organisms can produce changes to their reproductive success that might confer an advantage for the mutant organisms with respect to their peers. Therefore, mutations drive adaptive evolution by virtue of their heritable effects on fitness. Empirical measures of the distribution of these …

The Detectability Of Atlantic Salmon (Salmo Salar) Microsatellite And Mitochondrial Environmental Dna, Simone N. Miklosi

Electronic Thesis and Dissertation Repository

Little is known about what information can be gathered from microsatellite eDNA. It is important to gain a deeper understanding of the detectability and analysis of microsatellite eDNA because it could provide information about population size that mitochondrial eDNA cannot. Water samples were collected from tank and river experiments, and rivers known to contain Atlantic salmon (Salmo salar) and analyzed for Atlantic salmon mitochondrial and microsatellite eDNA. Mitochondrial eDNA was detected from all the tank experiments and 10 out of 15 rivers known to contain Atlantic salmon. Microsatellite eDNA was detected from all the tank experiments and none …

Addressing The Impact Of Time-Dependent Social Groupings On Animal Survival And Recapture Rates In Mark-Recapture Studies, Alexandru M. Draghici

Electronic Thesis and Dissertation Repository

Mark-recapture (MR) models typically assume that individuals under study have independent survival and recapture outcomes. One such model of interest is known as the Cormack-Jolly-Seber (CJS) model. In this dissertation, we conduct three major research projects focused on studying the impact of violating the independence assumption in MR models along with presenting extensions which relax the independence assumption. In the first project, we conduct a simulation study to address the impact of failing to account for pair-bonded animals having correlated recapture and survival fates on the CJS model. We examined the impact of correlation on the likelihood ratio test (LRT), …

A Theoretical Perspective On Parasite-Host Coevolution With Alternative Modes Of Infection, George N. Shillcock

Electronic Thesis and Dissertation Repository

We investigate how natural selection shapes the coevolution of parasitism. We discuss the antagonism fuelled by parasites’ necessity to transmit to novel hosts, and host’s desire to minimise virulence. In support, we build a mathematical model which considers the epidemiology and life-history trade-offs faced by an obligate microparasite and its host. Our model allows parasites to be transmitted to new hosts via direct contact (horizontally) or from parent to offspring during birth (vertically). We test the hypothesis that vertical transmission causes virulence to diminish in the long run, and contrary to widely accepted views, find that vertical transmission need not …

The Impact Of Long-Term Artificial Removal Experiment And Natural Local Extinctions On The Genetics Of An Alpine Butterfly, Keon Young Park

Electronic Thesis and Dissertation Repository

In the current age of widespread anthropogenic effects across the globe, organisms are vulnerable to habitat fragmentation and localized decline in population more than ever before. Therefore, insight into metapopulation-level dynamics and the genetic basis of inter-patch dispersal is key to understanding the regional persistence of a species in the face of potential localized extinction or population bottleneck. In this study I used samples from a previously conducted localized long-term population removal experiment to investigate the effects of an extended population reductions on the genetic structure of a local population, and to explore the genetic basis of dispersal and recolonization …

Population And Evolution Dynamics In Predator-Prey Systems With Anti-Predation Responses, Yang Wang

Electronic Thesis and Dissertation Repository

This thesis studies the impact of anti-predation strategy on the population dynamics of predator-prey interactions. This work includes three research projects.

In the first project, we study a system of delay differential equations by considering both benefit and cost of anti-predation response, as well as a time delay in the transfer of biomass from the prey to the predator after predation. We reveal some insights on how the anti-predation response level and the biomass transfer delay jointly affect the population dynamics; we also show how the nonlinearity in the predation term mediated by the fear effect affects the long term …

Amount And Sources Of Population Variability In The Metabolome Of A Crayfish Species, Cora Bilhorn

Electronic Thesis and Dissertation Repository

My study investigated the amount of variation associated with region and stream scales in the metabolomes of northern crayfish (Faxonius virilis), collected from seven streams distributed across three ecoregions in Western Canada. Additionally, my study measured metabolomes of crayfish from the same seven streams after experiencing a common laboratory environment to separate the effects of environmental and genetic variation. Region and stream scales were found to be poor predictors of metabolomic variation among crayfish sampled in the field but exhibited increased predictive ability among crayfish exposed to the common environment, indicating crayfish from separate populations responded differently to …

Contraction Analysis Of Functional Competitive Lotka-Volterra Systems: Understanding Competition Between Modified Bacteria And Plasmodium Within Mosquitoes., Nickolas Goncharenko

Electronic Thesis and Dissertation Repository

We propose and analyze an extension to the classic Competitive Lotka-Volterra (CLV) model. The goal is to model competition between species, with a response from the environment. This response is a function of the population of all species and can represent numerous physical phenomena including resource limitation and immune response of a host due to infection. We name this new system a Functional Competitive Lotka-Volterra (FCLV) model. We mainly use the construction of contraction metrics, to determine global properties of the model. We use this result to analyze the competition between Plasmodium sp. and genetically engineered bacteria within the midgut …

Top-Down And Bottom-Up Effects On Collembola Communities In Soil Food Webs, Jordan Kustec

Electronic Thesis and Dissertation Repository

Anthropogenic changes are causing shifts within soil food web communities, which may alter ecosystem processes such as nutrient cycling, carbon storage and decomposition. I quantified ecological stressor effects on the abundance, richness, community composition and body size of a soil-dwelling microarthropod (Collembola: Hexapoda). I quantified the effects of warming and nitrogen deposition in two separate field studies and demonstrated that warming shifts Collembola community structure and decreases community body size. I quantified the interactive effects of top-down and bottom-up forces mediated by warming as ecological stressors in Collembola communities. I found that bottom-up effects of nutrient addition did not affect …

The Costs Of Fear: Integrating Fear Effects On Prey Into Population Ecology, Marek Charles Allen

Electronic Thesis and Dissertation Repository

Predators not only kill prey, but through the 'fear' of predation, predators induce costly anti-predatory responses in prey. Anti-predatory costs may scale up to effects on prey populations, through effects on prey reproduction and survival. This thesis aimed to quantify the net effect of predation risk effects on a prey population in a terrestrial vertebrate system for the first time. I manipulated the perceived risk of predation in multiple study years by exposing song sparrows (Melospiza melodia) to playbacks of either predator or non-predator calls. Females exposed to predator playbacks laid fewer eggs, had more eggs fail to …

Modelling Walleye Population And Its Cannibalism Effect, Quan Zhou

Electronic Thesis and Dissertation Repository

Walleye is a very common recreational fish in Canada with a strong cannibalism tendency, such that walleyes with larger sizes will consume their smaller counterparts when food sources are limited or a surplus of adults is present. Cannibalism may be a factor promoting population oscillation. As fish reach a certain age or biological stage (i.e. biological maturity), the number of fish achieving that stage is known as fish recruitment. The objective of this thesis is to model the walleye population with its recruitment and cannibalism effect. A matrix population model has been introduced to characterize the walleye population into three …

On Honey Bee Colony Dynamics And Disease Transmission, Matthew I. Betti

Electronic Thesis and Dissertation Repository

The work herein falls under the umbrella of mathematical modeling of disease transmission. The majority of this document focuses on the extent to which infection undermines the strength of a honey bee colony. These studies extend from simple mass-action ordinary differential equations models, to continuous age-structured partial differential equation models and finally a detailed agent-based model which accounts for vector transmission of infection between bees as well as a host of other influences and stressors on honey bee colony dynamics. These models offer a series of predictions relevant to the fate of honey bee colonies in the presence of disease …

Evolutionary Genetic Aspects Of Host Association In Generalist Ectoparasites, Benoit Talbot

Electronic Thesis and Dissertation Repository

Despite the use of the host for dispersal by most parasite species, the extremely loose relationship typical between highly mobile hosts and generalist ectoparasites may lead to very different gene flow patterns between the two, leading in turn to different spatial genetic structure, and potentially different demographic history. I examined how similar gene flow patterns are between Cimex adjunctus, a generalist ectoparasite of bats present throughout North America, and two of its key bat hosts. I first analyzed the continent-scale genetic structure and demographic history of C. adjunctus and compared it to that of two of its hosts, the …

Mhc Class Iiβ Diversity As A Correlate Of Neutral-Locus Similarity And Diversity, And A Predictor Of Overwinter Return, In Song Sparrows (Melospiza Melodia), Matthew J. Watson

Electronic Thesis and Dissertation Repository

Abstract

The major histocompatibility complex (MHC) is a family of genes involved with recognizing pathogens and mounting an immune response. Parasite-mediated selection often favours heterozygosity at MHC because MHC-diverse individuals recognize a wider range of pathogens. Because migratory birds encounter many pathogens, I hypothesized that MHC diversity predicts overwinter and juvenile survivorship in song sparrows (Melospiza melodia). I found no correlation between MHC diversity and neutral-locus (microsatellite) heterozygosity, suggesting that measures of neutral and adaptive genetic diversity provide complementary rather than redundant information. However, pairwise similarity at MHC predicted pairwise similarity at microsatellite loci. In contrast to my hypothesis, MHC …

The Mixed Source Chinook Salmon Fishery In Lake Huron: A Comparison Of Spawning And Foraging Habitat Use By Naturalized And Hatchery Fish, Stephen A.C. Marklevitz

Electronic Thesis and Dissertation Repository

Chinook salmon (Oncorhynchus tshawytscha) were introduced into the Great Lakes to restore top-down control of the food web and create new recreational fisheries. Soon after introduction, naturalized spawning populations became established, and with continued stocking of hatchery fish, created a mixed source fishery. My research provides new ecological information about the contributions of naturalized fish to the mixed source Chinook salmon fishery in Lake Huron. I examined spawning and foraging habitat use by naturalized and hatchery Chinook salmon using multiple methods to identify sources of individual fish (external tags, hatchery fin clips, and otolith microchemistry). In the Sydenham …

Population Genetic Structure And Parasite Communities In A Nomadic Songbird, The Red Crossbill (Loxia Curvirostra), Erica L. Lovett

Electronic Thesis and Dissertation Repository

Although much speciation occurs in allopatry, populations with overlapping geographic ranges may also experience reduced gene flow due to ecological differences. Parasites are an important feature of the biotic environment, and place important selective pressures on their hosts, potentially reducing gene flow among geographically separated host populations. However, virtually nothing is known about host-parasite interactions in systems where hosts have nomadic distributions, and where ecologically distinct populations exist in sympatry. I examined population genetic structuring and characterized bloodborne parasite communities across four ecologically distinct, but partially sympatric, “vocal types” of nomadic red crossbills (Loxia curvirostra) sampled at multiple …

Weather And Photoperiod Indices Of Autumn And Winter Dabbling Duck Abundance In The Mississippi And Atlantic Flyways Of North America, Lena M. Van Den Elsen

Electronic Thesis and Dissertation Repository

Climate change may influence autumn and winter distributions of dabbling ducks throughout the Atlantic and Mississippi Flyways of North America. To determine how weather and photoperiod influenced autumn-winter abundances of dabbling ducks at staging areas in eastern North America, I modeled weather and photoperiod variables with rate of change in relative abundance of various dabbling duck species over space and time. Latitude was incorporated into models to determine if changes in duck abundance in relation to weather severity were influenced by locale. Changes in abundance were best described by weather models incorporating temperature and snowfall variables for all species except …

Fear Of Predators Compromises Parental Care And Juvenile Survival In A Songbird, Philip Blair Dudeck

Electronic Thesis and Dissertation Repository

Predators kill, but the risk of being killed is also a powerful force affecting survival because scared prey eat less, thereby increasing the likelihood of starvation. Young of most animals are extremely vulnerable to predators and may alter their behaviour to limit detection. I investigated the previously unexplored effects that predation risk has on the behaviour of newly fledged offspring and their parents, and the impact this has on offspring survival. I manipulated predation risk using sound and found that parent song sparrows reduced their feedings, providing 60% less food overall. Critically, not only did this parental response estimate survival …

Movement, Habitat Selection, And Survival Of Female Wood Ducks (Aix Sponsa) And Ducklings At Long Point, Ontario., Matthew E. Dyson

Electronic Thesis and Dissertation Repository

Nest box programs provide additional nesting opportunities for wood ducks throughout their breeding range. The purpose of my research was to understand habitat use and survival of wood ducks produced from nest boxes during the brood-rearing period. I used radio-telemetry to monitor female wood ducks and ducklings to 30 days post-hatch. Females showed the greatest selection for swamp, scrub-shrub, and emergent marsh habitats, and used emergent marsh most. Female survival was high (0.90, 95% CI = 0.81 – 1.0). Conversely, brood survival (0.47, 95% CI = 0.33 - 0.69) and duckling survival (0.18, 95% CI = 0.14 – 0.22) were …

Improving The Use Of Migration Counts For Wildlife Population Monitoring, Tara L. Crewe

Electronic Thesis and Dissertation Repository

Counts of migrating animals are used to monitor populations, particularly for species that are not well sampled by breeding and wintering surveys. The use of migration counts for population monitoring relies on the assumptions that new individuals are detected each day, and that probability of detecting those individuals remains constant over time. The impact of violating these assumptions on our ability to estimate reliable population trends is not well understood. Further, on a broad spatial scale, our ability to combine data across sites to estimate regional or national trends has been limited by the possibility that trends vary regionally in …

Ecological And Evolutionary Interactions Between Song Sparrows (Melospiza Melodia) And Their Bloodborne Parasites, Yanina Sarquis-Adamson

Electronic Thesis and Dissertation Repository

Local adaptation is the result of natural selection operating at a local scale, such that trade-offs in fitness across different environments result in individuals having higher fitness in their place of origin than when transported into a foreign environment. Populations may become locally adapted to features of their abiotic environment, or in the case of coevolutionary arms races between hosts and parasites, to other species comprising their biotic environment. If host populations are adapted to their local (sympatric) parasites, or conversely if parasites are adapted to their local hosts, then interactions with local parasite strains may influence the fitness consequences …

Population Genetic Structure In The Pitcher Plant Flesh Fly Fletcherimyia Fletcheri, John R. O'Leary

Electronic Thesis and Dissertation Repository

The study of population genetic structure in the pitcher plant flesh fly, Fletcherimyia fletcheri, is an important step in bettering our understanding of dispersal abilities, gene flow, and behavior in the species. In this paper, an extended sampling of populations across Algonquin Provincial Park was performed to elucidate an effective scale of genetic differentiation in F. fletcheri. Genetic differentiation between sites was compared to interceding landscape composition, and digital dispersal models were developed, testing the hypothesis that F. fletcheri uses aquatic tributaries for dispersal between peatlands. Data were collected on 613 specimens from 15 populations, and population differentiation …

Ecological Constraints And The Evolution Of Cooperative Breeding, David Mcleod

Electronic Thesis and Dissertation Repository

Cooperative breeding is a social behaviour in which certain individuals will opt to delay or forgo their own reproduction in order to help other individuals. Cooperative breeding is one of the most conspicuous examples of cooperation in nature. However, theoretical understanding of why this behaviour occurs is lacking and contradictory. In this thesis, I examine the role played by ecological constraints on the emergence of cooperative breeding. Contrary to previous results, I find that ecological constraints do matter, provided the population dynamics are properly accounted for. I also examine the long-term evolutionary dynamics of cooperative breeding, and obtain the optimal …

Dynamics Of Fat And Lean Mass In Refuelling Migrant Passerines Measured Using Quantitative Magnetic Resonance, Lisa V. Kennedy

Electronic Thesis and Dissertation Repository

Although fat deposition during stopover in migrating passerine birds has been extensively studied, changes in lean mass during refuelling are not well understood. I used quantitative magnetic resonance (QMR) analysis to measure the deposition of fat and lean mass for both recaptured and single capture migrant passerines in spring and fall at Long Point, Ontario. Both the recapture analysis and single capture regression analysis indicated a substantial contribution of lean mass to overall increases in total body mass. Some of the variation in the relative deposition of fat and lean mass was explained by sex, age and season. I then …