Other Ecology and Evolutionary Biology Commons^™

Neurotranscriptomic Changes Associated With Chick-Directed Parental Care In Adult Non-Reproductive Japanese Quail, Patricia C. Lopes, Robert De Brujin

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

For many species, parental care critically affects offspring survival. But what drives animals to display parental behaviours towards young? In mammals, pregnancy-induced physiological transformations seem key in preparing the neural circuits that lead towards attraction (and reduced-aggression) to young. Beyond mammalian maternal behaviour, knowledge of the neural mechanisms that underlie young-directed parental care is severely lacking. We took advantage of a domesticated bird species, the Japanese quail, for which parental behaviour towards chicks can be induced in virgin non-reproductive adults through a sensitization procedure, a process that is not effective in all animals. We used the variation in parental responses …

Utility Of Visual Counts For Determining Efficacy Of Management Tools For California Ground Squirrels, Roger A. Baldwin, Theresa A. Becchetti, Niamh Quinn, Ryan Meinerz

Human–Wildlife Interactions

Visual counts are frequently used to assess efficacy of management tools for ground squirrels (Marmotini), but the effectiveness of this approach has not been assessed for many ground squirrel species including California ground squirrels (Otospermophilus spp.). As such, we used visual counts of California ground squirrels to determine the efficacy of diphacinone-treated oat groat applications in rangelands in central California, USA, and compared those results to efficacy values derived from the use of radio-collared ground squirrels in the same plots. We also used location data of radio-collared ground squirrels to explore the size of buffer zone needed around census …

Investigating Local Adaptation To Hypoxia Stress In The Eastern Oyster Through Comparative Transcriptomics, Heather Nichole Smith

LSU Master's Theses

Climate change represents one of the most important challenges to biodiversity, therefore it is important to understand the mechanisms that allow species to respond to rapid environmental change. Here, we compared two populations of eastern oysters, Crassostrea virginica, from the Gulf of Mexico to study the mechanisms underlying hypoxia tolerance. Using a common garden experiment and comparative transcriptomics, we identified sets of genes involved in the hypoxia response and found differences in both the timing and baseline expression of hypoxia-responsive genes between tolerant and sensitive populations, consistent with a scenario of local adaptation. These genes include the signaling transcription factor …

Effects Of Wetland Management And Associated Abiotic Factors On Rare Plant Communities Of Spring-Fed Arid Wetlands, Antonio Cantu De Leija

LSU Master's Theses

Spring-fed arid wetlands support high biological productivity and are hotspots for endemism and distribution of rare plants, making them areas of high conservation value. These systems are driven by complex interactions among groundwater discharge and the geomorphic and climatic features of the setting, which provide gradients of edaphic conditions, particularly soil moisture and salinity that influence the presence and abundance of rare plant communities. However, spring-fed arid wetlands are at particular risk of increases in salinity and drier hydrological regimes due to anthropogenic activities. Such alterations to abiotic conditions may jeopardize the distribution and abundance of rare plants by exceeding …

Seasonal Variation In The Feeding Ecology Of Yellowfin Tuna (Thunnus Albacares) From The Northern Gulf Of Mexico, Mitchell Shay Lovell

LSU Master's Theses

Highly migratory fishes (e.g., tunas, billfishes, and sharks) play a significant role in the structure and function of open-ocean ecosystems and a better understanding of the food web dynamics that support their populations is essential to improve management and conservation. Here, I use complementary approaches (stomach contents, DNA barcoding, & stable isotopes) to examine seasonal variability in the feeding ecology of sub-adult (70 – 100 cm; n = 371) and adult (100 – 160 cm; n = 206) yellowfin tuna (Thunnus albacares) from the northern Gulf of Mexico over a one-year period (April 2019 – March 2020). Stomach …

Fisheries Food Webs: Quantifying Habitat-Use, Trophic Structure, And Energetic Pathways In Coastal Tanzania, Mario Fernando Hernandez

LSU Doctoral Dissertations

Commercial and recreational fisheries are a valuable resource to millions of people around the world. Developing countries are particularly dependent on the revenue provided by locally harvested fish with total exports from these nations valued at $80 billion USD. For Tanzania, fisheries provide not only a source of revenue but an important source of protein with an estimated 25 to 30kg of fish consumed per person every year. There is no doubt that high fisheries production is critical to the well-being of millions of livelihoods along the Tanzanian coast. An important but poorly understood driver of fisheries production is the …

Afterschool Sustainability Club, Ethan Halman Gonzalez

Honors Program: Expanded Learning Clubs

In-depth lesson plans used at Riley Elementary to educate students about the environment around them and how to preserve it.

Not So Dystopian: A Historical Reading Of Eugenics In Science Fiction, Riley Sanders

The Forum: Journal of History

Broadly, this paper is an effort in complicating traditional readings of eugenic themes in science fiction. Two landmark novels, Wells’ The Island of Dr. Moreau (1896) and Huxley’s Brave New World (1932), are highlighted as representative of the early and late stages of eugenics. By focusing on the troubling historical context surrounding these authors, I denounce the simple reading of these works as merely “dystopian”. Scholars like Francis Fukuyama advance these simplistic readings by instinctively assuming that Wells and Huxley were against eugenics. This paper continues the tradition that David Bradshaw popularized in his book The Hidden Huxley, which argues …

Yakety Sacs: Laryngeal Air Sac Usage In Great Apes, Chelsea Trenbeath

Master of Science in Integrative Biology Theses

Except for humans, extant great apes have evolutionarily conserved lateral ventricular air sacs extending from laryngeal saccules. Humans are the only species of Hominidae that lack this anatomical feature attached to the primary vocal apparatus. As we are the only species that produces spoken language, this association has led to the hypothesis that the loss of lateral ventricular air sacs was necessary for the evolution of spoken language. However, why these sacs are conserved in all other hominids remains unclear. Computer modeling has indicated that air sacs may increase resonance properties, but there are no data from great apes indicating …

Covid-19: A One Health Issue, Karen Gruszynski

Cumberland Mountain Naturalist

COVID-19 has very rapidly become part of modern societal lexicon as the disease highlights the importance understanding zoonotic diseases and the impact they can have on human life. With a 177million human cases and 3.82million deaths globally at the time of this publication, the "One Health" nature of the disease has had a lasting impact across the planet. As the disease spread rapidly, it highlighted the dissemination of information through social media and other sources. With this in mind, Dr. Gary Vroegindewey, Director for One Health at LMU-CVM, put forth the idea to have students collect and summarize information about …

A Dynamic Landscape Of Fear: Human Impacts On Carnivore Communities, Tru Hubbard

All NMU Master's Theses

Mammalian carnivores are elusive, enigmatic species that often play keystone roles in ecosystems through direct (i.e., predation) and indirect (i.e., perceived predation risk) effects. Worldwide many carnivore species are experiencing rapid human-mediated population declines due to landscape change and habitat disturbance. For researchers, carnivores present unique challenges due to their large home ranges, low population densities, sensitivity to human disturbance, and direct persecution. Further, growing evidence shows that human activity can impact carnivore behavior and community structure by altering predator-prey interactions, shifting diel activity patterns, and altering wildlife movement leading to increased sightings, nuisance reports, and harvests. To investigate how …

Dna Barcoding Of The High-Altitude Artemisia And Nepeta Species, Vyacheslav Dushenkov, Csanad Gurdon, Shukhratdzhon Satorov

Publications and Research

DNA barcoding was performed for four medicinal plant species from the mountain region of Tajikistan. The nucleotide sequences for Artemisia sieberi, Artemisia scoparia, Artemisia vulgaris, and Nepeta glutinosa were deposited into the GenBank at the National Center for Biotechnology Information.

Understanding And Predicting The Distribution Of Biodiversity In The Atlantic Forest, Andrea Paz Velez

Dissertations, Theses, and Capstone Projects

Understanding how biodiversity is distributed in geography is essential for conservation. This requires an understanding of the multiple dimensions of biodiversity: species, their ecological functions, and their evolutionary history. For my Ph.D. dissertation, I devised a study to explore the environmental drivers of biodiversity patterns in Neotropical species. I first investigated broad macroecological patterns in the Brazilian Atlantic Forest, combining occurrence data and phylogenetic information from multiple clades of animals and plants (Chapter 1). I discovered that one can accurately predict the accumulation of species richness and phylogenetic diversity based on current climatic descriptors – particularly precipitation – but not …

The Effects Of Infliximab On The Fibrosis Response Of Three-Spine Stickleback, Mita Kale

Honors Scholar Theses

This study was conducted to determine if the monoclonal antibody drug infliximab could effectively suppress the fibrosis immune response in three-spine stickleback fish. Successful suppression of this response could allow for further study of cestode infection and growth without the presence of fibrosis. Infliximab’s efficacy was investigated through conducting two intraperitoneal injection experiments and examinations of the fibrosis in the body cavity of the euthanized stickleback. We used immune adjuvant alum to induce a fibrosis response without the presence of the S. solidus tapeworm parasite. Ultimately, the differences in fibrosis levels between the treatment groups that received alum and the …

Body And Tail Coordination In The Bluespot Salamander (Ambystoma Laterale) During Limb Regeneration, Cassandra M. Donatelli, Keegan Lutek, Keshav Gupta, Emily M. Standen

Engineering Faculty Articles and Research

Animals are incredibly good at adapting to changes in their environment, a trait envied by most roboticists. Many animals use different gaits to seamlessly transition between land and water and move through non-uniform terrains. In addition to adjusting to changes in their environment, animals can adjust their locomotion to deal with missing or regenerating limbs. Salamanders are an amphibious group of animals that can regenerate limbs, tails, and even parts of the spinal cord in some species. After the loss of a limb, the salamander successfully adjusts to constantly changing morphology as it regenerates the missing part. This quality is …

Examining The Sustainability Of Restored Sub-Tidal Oyster Reefs In Coastal Louisiana, Sarah C. Leblanc

LSU Master's Theses

Climate related alterations and anthropogenic disturbance threaten the ecological integrity and sustainability of coastal estuaries. Many activities seek to restore and sustain these at-risk areas with the goal of restoring systems to historic patterns of succession and community development; however long-term monitoring of restoration projects remains limited. Additionally, restoration efforts aim to achieve certain success thresholds, however, these thresholds are often vague, absent, or inconsistent, and receive little long-term analyses following restoration. A key coastal engineer, the eastern oyster (Crassostrea virginica), provides multiple ecosystem services, but recent population decline has prompted investment in restoration. Restoration activities include cultch …

Microplastics In The Big Apple: A Look Into Plastic Pollution Of New York City Waters, Taina Colon

Student Theses 2015-Present

This paper addresses the issue of the presence of microplastics in NYC waters and how existing policy, in combination with a lack of research, fails to acknowledge the risk and harm of this type of pollution. Additionally, it presents the Bronx River as an example of a specific body of water in New York City and employs the following disciplines to analyze microplastic pollution. Chapter 1 uses ecological research to define microplastic pollution and discuss how this type of pollution is a problem far more vast and complicated than it is widely considered to be. Chapter 2 delves into environmental …

Characterizing The Dormancy And Repair Of A Circumneutral Passive Remediation System Receiving Iron And Sulfate-Rich Amd, Garrett Struble

Electronic Theses and Dissertations

The Wingfield Pines remediation system is a ~20-acre circumneutral, gravity-fed system constructed in 2009 to passively remediate Fe from an ~2000 gallon/minute effluent. In 2017, a fracture to the system’s underground cavern caused the AMD effluent to bypass the system, flowing directly into Chartiers Creek and leaving the system decommissioned between 2017-2019. Soil slurry and water samples were collected in the weeks prior to the system’s reinstalment in September 2019 through January 2020 in order to determine the effect of the repair on remediation efficiency and microbial community composition. This study acted as the first to describe the temporary decommissioning …

Using Bacterial And Fungal Inoculation Strategies To Aid In The Wetland Restoration Of Native Plants In Southern California, Amy Alverson, Karina K. Johnston

Honors Thesis

Planting of native species is a key part of ecological restoration, although the encroachment of invasive species and obstacles to seed germination can limit the success of revegetation efforts. The use of indigenous Plant Growth Promoting Rhizobacteria (PGPR) and Arbuscular Mycorrhizal Fungi (AMF) have been shown to increase the long-term height and diameter of native plants and increase soil fertility in certain studies. Inoculation of seeds with native PGPR have also been shown to increase seed germination. In this study, the effect of different inoculation treatments on different plants native to southern California was studied at two sites in the …

Sublethal Effects Of Red Imported Fire Ant Envenomation On Hatchlings Of North American Oviparous Snakes, Hannah Warner, Meredith Swartwout

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

Invasive species cause major ecological and economic damage. The Red Imported Fire Ant (RIFA; Solenopsis invicta) has successfully invaded much of the southeastern United States and has caused both widespread economic damage and is suspected to be the driver of enigmatic declines of several oviparous snake species. This study aimed to determine the sublethal effects of RIFA on hatchlings of six species of oviparous snakes (Coluber constrictor, Lampropeltis calligaster, L. holbrooki, Opheodrys aestivus, Pantherophis emoryi, and P. obsoletus) by exposing hatchlings to envenomation by RIFA and then measuring two performance metrics: righting response and …

Particle Tracking Reveals Pelagic Red Crabs As Indicators Of Climate-Driven Range Expansion In The California Current, Elizabeth Saraf

Senior Honors Projects

Since their first recorded occurrence in 1859, Pelagic Red Crabs (PRC; Pleuroncodes planipes) have experienced increased frequency of episodic mass stranding events in the Eastern Pacific Ocean. PRC’s are transported over 1,000 km northward of their central domain from the coast of central Baja California, Mexico. They have been reported by the thousands on the beaches of central and southern California. Their presence influences the surrounding ecosystem and commercial fisheries because they are nutritional prey items and large predators change their diet to incorporate PRC’s when they are available. Seasonal coastal currents and the California Undercurrent transport warmer waters …

Taphonomy Of Late Jurassic (Tithonian) Morrison Formation Apatosaurus Sp. Vertebrae Found Associated With Teeth From Allosaurus Sp. And Ceratosaurus Sp., And Body Size Extrapolation From The Associated Theropod Teeth., Greg C. Agyan

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

An Apatosaurus sp. locality from Dinosaur National Monument designated DNM-15 was excavated in 1985, and associated with two Allosaurus teeth and one Ceratosaurus tooth that were near one of the caudal vertebrae. The Ceratosaurus tooth was buried between an overlying rib and that same caudal vertebra. The caudal vertebrae of the DNM-15 Apatosaurus were intact and articulated, but the anterior skeleton was mostly absent, with a row of articulated sacral vertebrae in close association with a femur. Two other Allosaurus teeth were reported near the preserved ilium of the Apatosaurus, but they could not be located in the collections. …

An Experiment To Test For Rapid Evolution In An Introduced Ectomycorrhizal Symbiosis, Valerie Rewa

Honors Theses

The rapid evolution of introduced ectomycorrhizal-plant partnerships is an under- explored topic that may have immense impacts on ecosystems around the world. This experiment sought to identify and quantify this evolution and its impacts on both fungal colonization as well as plant growth. I used a laboratory experiment to analyze these factors in native and exotic genotypes of Suillus cothurnatus and Pinus species. Much of the data was not able to be collected, but that which was did not support the presence of rapid evolution in the mutualistic partnership. Pine species was seen to have a significant effect on plant …

Examining The Invasion Of A Bush Honeysuckle Using Climate Analysis, Andrew Palmer

Biological Sciences Undergraduate Honors Theses

Within the study of invasive plants, particular importance is placed on elucidating the mechanisms by which these plants proliferate and dominate within their introduced ranges. Several theories have been advanced to explain these invasions, each with different implications for the predicted range of invasive plants. Recent studies have provided support for the application of several invasion theories to Lonicera maackii, or what is more commonly referred to as bush honeysuckle. This species provides a unique opportunity to examine the efficacy of these theories in explaining the range expansion of invasive plants. L. maackii is endemic to eastern Asia, but …

Contaminated Mycoscapes: Designing With Living Organisms, Maria Gutierrez, Elise Zilius

Architecture Senior Theses

The Anthropocene has stripped the planet of its resources, leaving behind an abundance of contamination. The built environment no longer meets the standards set by our turbulent planet. Humankind has lost the privilege of agency in design and construction. Construction methods have failed to evolve concurrently to the intense accumulation of waste; remaining firmly rooted in the materiality of the past, they have upheld architectural notions of stagnancy, cleanliness, and hygiene and ignore the rapidly changing conditions of the environment. This investigation uses contamination to fuel mycelial growth and construct emergent forms whilst executing remediation strategies for polluted sites of …

Gray Wolves, Eric Gese, John P. Hart, Patricia Terletzky

Wildlife Damage Management Technical Series

Wolf conflicts are primarily related to predation on livestock, pets and other domestic animals, as well as their direct and indirect impacts on native ungulates (i.e., big game). Economic losses vary widely with some livestock producers facing high levels of depredation in some areas. This publication focuses on wolf ecology, damage, and management, particularly as it relates to wolf depredation on livestock and other conflicts with people.

Wolves and people share the same environments more than people realize. In the U.S., wolves are not confined to wilderness areas. Though curious, wolves generally fear people and rarely pose a threat to …

Trophic Ecology Of Mesopelagic Fish Larvae And Juveniles In The Northern Gulf Of Mexico, Emily Gipson

Master's Theses

The deep-pelagic environment encompasses ocean waters below 200 m depth, and comprises 90% of the volume of the Gulf of Mexico. Deep-pelagic fishes are important prey for many oceanic consumers, but relatively little is known about their early life history, including larval fish trophic ecology. An understanding of the role deep-pelagic fish larvae have in oceanic food webs is important in the development of ecosystem models that examine the connectivity (via vertical migrations) between the deep-pelagic and epipelagic environments with respect to trophic interactions, nutrient cycling, and carbon sequestration. In this study, archived plankton samples collected during 2010 and 2011 …

Saving Butterflies In The City: Gardens As Conservation Spaces In Urban Landscapes., Lindsay D. Nason

Electronic Theses and Dissertations

Butterfly populations are declining, and habitat degradation due to urbanization is a major contributing factor. Gardens represent a large proportion of land area in many cities, and thus may be important for conserving butterflies in urban environments. In this dissertation, I examine how garden features (ex: size, level of urbanization, plant diversity) affect adult butterfly diversity/abundance, behavior, and the predation risk faced by caterpillars. My study sites were native plant gardens in Jefferson, Bullitt, and Hardin Cos.,KY. In Chapter One, I used clay caterpillars to assess differences in predation pressure in gardens along a gradient of percent impervious surface (%IS). …

Stoichiometry And Parasitism: Changes In Nutrient Concentrations In The Three-Spined Stickleback-Schistocephalus Solidus System, Megan Braat

Honors Scholar Theses

Ecological stoichiometry is a rapidly growing field of study that assesses the elemental composition of organisms in ecosystems and the impact that changes in these elemental compositions have on populations. Parasitism is widely studied for its role in altering the physiology and behavior of hosts within a population. However, the interaction between parasitism and the stoichiometry of the host-parasite system has not been well-established. To determine the impact of parasitism on stoichiometry of host, we measured the elemental composition (%C, %N, and %P) and ratios (C:N, C:P, and N:P) of a population of parasitized and unparasitized Gasterosteus aculeatus (three-spined stickleback) …

Modeling Hydrochemical And Vegetation Responses Of High-Elevation Forested Watersheds To Future Climate And Atmospheric Deposition Changes In The Southeastern U.S., Hailong Huang

Dissertations

Changes in climate and atmospheric acidic deposition alter biogeochemical cycles in forested ecosystems. I investigated the responses of vegetation, soil, and hydro-related processes to changes in climate and acidic deposition at five high-elevation forests in the southeastern U.S. using a biogeochemical model - PnET-BGC model. I focused on change-points and thresholds concepts that were less studied in forest ecosystems as well as seasonal variability of responses and extreme events. I applied principal component analysis (PCA) to reduce the dimensionality of data. I developed a Bayesian multi-level model to derive key biogeochemical variables response to temperature and precipitation (local) and latitude …