Other Ecology and Evolutionary Biology Commons^™

Acoustic Signatures Of Habitat Types In The Miombo Woodlands Of Western Tanzania, Sheryl Vanessa Amorocho, Dante Francomano, Kristen M. Bellisario, Ben Gottesman, Bryan C. Pijanowski

The Summer Undergraduate Research Fellowship (SURF) Symposium

The Miombo Woodlands of Tanzania comprise several habitat types that are home to a great number of flora and fauna. Understanding their responses to increasing human disturbance is important for conservation, especially in places where people depend so directly on their local ecosystem services to survive. Soundscapes are a powerful approach to study complex biomes undergoing change. The sounds emitted by soniferous fauna characterize the acoustic profile of the landscapes they inhabit such that habitats with the highest acoustic abundance are considered as the most diverse and possibly more ecologically resilient. However, acoustic variability within similar habitat types may pose …

Responses Of Agroecosystems To Climate Change: Specifics Of Resilience In The Mid-Latitude Region, Menas Kafatos, Seung Hee Kim, Chul-Hee Lim, Jinwon Kim, Woo-Kyun Lee

Mathematics, Physics, and Computer Science Faculty Articles and Research

This study examines the productivity and resilience of agroecosystems in the Korean Peninsula. Having learned valuable lessons from a Chapman University project funded by the United States Department of Agriculture which concentrated on the semi-arid region of southwestern United States, our joint Korea—Chapman University team has applied similar methodologies to the Korean Peninsula, which is itself an interesting study case in the mid-latitude region. In particular, the Korean Peninsula has unique agricultural environments due to differences in political and socioeconomic systems between South Korea and North Korea. Specifically, North Korea has been suffering from food shortages due to natural disasters, …

Synergistic Use Of Remote Sensing And Modeling To Assess An Anomalously High Chlorophyll-A Event During Summer 2015 In The South Central Red Sea, Wenzhao Li, Hesham El-Askary, K. P. Manikandan, Mohamed A. Qurban, Michael J. Garay, Olga V. Kalishnikova

Mathematics, Physics, and Computer Science Faculty Articles and Research

An anomalously high chlorophyll-a (Chl-a) event (>2 mg/m3) during June 2015 in the South Central Red Sea (17.5° to 22°N, 37° to 42°E) was observed using Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellite platforms. This differs from the low Chl-a values (<0.5 mg/m3) usually encountered over the same region during summertime. To assess this anomaly and possible causes, we used a wide range of oceanographical and meteorological datasets, including Chl-a concentrations, sea surface temperature (SST), sea surface height (SSH), mixed layer depth (MLD), ocean current velocity and aerosol optical depth (AOD) obtained from different sensors and models. Findings confirmed this anomalous behavior in the spatial domain using Hovmöller data analysis techniques, while a time series analysis addressed monthly and daily variability. Our analysis suggests that a combination of factors controlling nutrient supply contributed to the anomalous phytoplankton growth. These factors include horizontal transfer of upwelling water through eddy circulation and possible mineral fertilization from atmospheric dust deposition. Coral reefs might have provided extra nutrient supply, yet this is out of the scope of our analysis. We thought that dust deposition from a coastal dust jet event in late June, coinciding with the phytoplankton blooms in the area under investigation, might have also contributed as shown by our AOD findings. However, a lag cross correlation showed a two- month lag between strong dust outbreak and the high Chl-a anomaly. The high Chl-a concentration at the edge of the eddy emphasizes the importance of horizontal advection in fertilizing oligotrophic (nutrient poor) Red Sea waters.

Microbial Community Richness Distinguishes Shark Species Microbiomes In South Florida, Rachael Cassandra Karns

HCNSO Student Theses and Dissertations

The microbiome (microbial community) of individuals is crucial when characterizing and understanding processes that are required for organism function and survival. Microbial organisms, which make up an individual’s microbiome, can be linked to disease or function of the host organism. In humans, individuals differ substantially in their microbiome compositions in various areas of the body. The cause of much of the composition diversity is yet unexplained, however, it is speculated that habitat, diet, and early exposure to microbes could be altering the microbiomes of individuals (Human Microbiome Project Consortium, 2012b, 2012a). To date, only one study has reported on microbiome …

Assessing The Supply Of Provisioning And Cultural Ecosystem Services From Urban Forests: A Philadelphia Pilot Study, Jenna Q. Detweiler

Environment and Sustainability Summer Fellows

This study develops a methodology for assessing the urban provisioning and cultural ecosystem services created by woody species in urban forests. Drawing on this methodology, the research examines these dynamics through use of an urban forest inventory and survey data for the city of Philadelphia. Findings quantify the percentage of species and corresponding percent of the tree population that are likely to be harvested by urban foragers in the city.

Habitat Management For Northern Bobwhites In Wisconsin: A Long-Term Assessment, Leroy R. Petersen, Robert T. Dumke, Barbara F. Duerksen

National Quail Symposium Proceedings

An experimental habitat management program was initiated to improve the carrying capacity for northern bobwhites ( Colinus virginianus) on private lands by the Wisconsin Department of Natural Resources (WDNR) in 1974. During 1975-80, extensive habitat restoration was undertaken on a 60-mi2 (l55-km 2) study area in Richland County to restore hedge row cover, improve riparian corridors and woodlot edges, and construct plots of food and shelter to function as wintering sites for bobwhites. Previous investigations in Wisconsin have documented that the long-term decline of bobwhites was the result of habitat deterioration, principally hedgerow cover. Elsewhere, continuous declines in bobwhite abundance …

Ecological Restoration, Elizabeth P. Mccann, Tania Schusler

School of Environmental Sustainability: Faculty Publications and Other Works

Ecological restoration involves revitalizing neglected, degraded, damaged, or destroyed habitats.

• Restoration-based education involves learners in ecological restoration with an intentional educational purpose.

• Urban restoration-based education can enhance personal and community well-being while improving ecosystem services in degraded environments.

• Restoration-based education can benefit from consciously forming partner ships, integrating local values alongside socioeconomic and ecological considerations, and being sensitive to issues of power and diverse cultures.

Converting Chemical Signatures In Vaterite Otoliths To Aragonite Otoliths In Steelhead Trout: Developing A Partition Coefficient, Jamie Justice

Honors Projects

Otoliths are small bones near the brain of teleost fish that aid in hearing and balance. Otoliths are typically composed of a polymorph of calcium carbonate called aragonite; however, when stressed, fish may transition to producing a less dense polymorph called vaterite. Otoliths are typically used in studies of fish natal origin or migration patterns because 1) otoliths grow concentrically around an origin (birth point), 2) the material in the otolith is not replaced over time, and 3) microelements (Sr and Ba) can be incorporated into the otoliths in proportion to elemental ratios in the water (i.e., when fish move …

Climate Change, Managed Relocation, And The Risk Of Intra-Continental Plant Invasions: A Theoretical And Empirical Exploration Relative To The Flora Of New England, Jesse Bellemare, Bryan Connolly, Dov F. Sax

Biological Sciences: Faculty Publications

The high rate of anthropogenic climate change projected for coming decades and evidence of low migration ability for many species have led researchers to warn of a looming extinction crisis. This threat is expected to be most acute for small-ranged endemic species, which could see novel climatic conditions develop rapidly across the entirety of their limited geographic ranges. To avoid extinctions, some conservationists have proposed that climateimperiled species might be candidates for "assisted colonization" or "managed relocation" to new regions, outside their historical ranges. One major concern related to managed relocation is the possibility that some relocated species could later …

K-Mer Analysis Pipeline For Classification Of Dna Sequences From Metagenomic Samples, Russell Kaehler

Graduate Student Theses, Dissertations, & Professional Papers

Biological sequence datasets are increasing at a prodigious rate. The volume of data in these datasets surpasses what is observed in many other fields of science. New developments wherein metagenomic DNA from complex bacterial communities is recovered and sequenced are producing a new kind of data known as metagenomic data, which is comprised of DNA fragments from many genomes. Developing a utility to analyze such metagenomic data and predict the sample class from which it originated has many possible implications for ecological and medical applications. Within this document is a description of a series of analytical techniques used to process …

Lilliput Effect Dynamics Across The Cretaceous-Paleogene Mass Extinction: Approaches, Prevalence, And Mechanisms, Matthew Brett Jarrett

USF Tampa Graduate Theses and Dissertations

An organism's body size entails both physiological and ecological costs. Furthermore, as a parameter in analyzing organisms, it represents a fundamental and essential morphometric character. Reductions in size following mass extinction is a commonly observed phenomenon in the fossil record. This study examines the evolutionary significance of this phenomenon termed the: 'Lilliput Effect' by proposing that it represents a rapid evolutionary response to altered selection pressures during a mass extinction. This primary hypothesis is evaluated against two additional hypotheses of size reduction: 1) stunted growth as a response to stressed ecosystems, and/or 2) mass extinctions are size selective.

These hypotheses …

How Do Designers Of The Built Environment Attempt To Make Ecological Sustainability Sensory Legible?, Carly L. Bartow

Architecture Undergraduate Honors Theses

This paper attempts to provide a theoretical framework for making ecosystem function and ecologically sustainable design more perceptible or sensible to people through architecture and the built environment. Design features of the Bertschi School Science Wing and the Bullitt Center in Seattle, Washington are incorporated to illustrate the sensory legibility of ecological sustainability criteria.The criteria are available to designers to help educate a building's occupants on environmentally sustainable design and motivate more sustainable behavior.

Optimizing Methods For Extraction Of Organic Compounds From Molluscan Shells, Kaydee Jo West

USF Tampa Graduate Theses and Dissertations

Mollusk shells contain proteins within and between the crystals of calcium carbonate. These organic molecules play an important role in biomineralization and shell function, and their stable isotope ratios of carbon and nitrogen are also thought to record important ecological information about the animal's diet and nutrient sources. These proteins can be preserved for millions of years, offering potential insight into pre-anthropogenic ecological conditions. However, shell organics in older shells are typically recovered in reduced abundances due to leaching and remaining organics are often converted from insoluble proteins to soluble, free amino acids, making them difficult to detect and recover. …

Pollutants And Foraminiferal Assemblages In Torrecillas Lagoon: An Environmental Micropaleontology Approach, Michael Martinez-Colon

USF Tampa Graduate Theses and Dissertations

Torrecillas Lagoon in the North Coast of Puerto Rico has experienced extensive anthropogenic influence over the past 400 years. Elevated concentrations of Potential Toxic Elements (PTEs) have been reported in surficial sediments. The main goal of this dissertation was to implement in Puerto Rico the use of benthic foraminifers as a bioindicators of PTEs and to compare the impact of Cu(II) on field samples with results of experimental work using cultures.

Analyses included geochemical assessment for bulk and carbonate- soluble bioavailable concentrations of PTEs in surface, core and pore-water samples, as well as analyses of grain-size, Percent Total Organic Carbon …

Plants' Native Distributions Do Not Reflect Climatic Tolerance, Tierney Bocsi, Jenica M. Allen, Jesse Bellemare, John Kartesz, Misako Nishino, Bethany A. Bradley

Biological Sciences: Faculty Publications

Aim: Biogeographers have long known that plant species do not fully encompass their fundamental niche. Nonetheless, in practice, species distribution modelling assumes that plant distributions represent a reasonable approximation of their environmental tolerance. For ecological forecasting, projections of habitat loss due to climate change assume that many species will be unable to tolerate climate conditions outside of those found within their current distributional ranges. We aim to test how well occurrences in the native range approximate the climatic conditions in which plant species can survive.

Location: Continental USA. Methods: We compared the climatic conditions between occurrences in the US native …

Gaur (Bos Gaurus) Abundance, Distribution, And Habitat Use Patterns In Kuiburi National Park, Southwestern Thailand, Supatcharee Tanasarnpaiboon

School of Natural Resources: Dissertations, Theses, and Student Research

Population status of gaur (Bos gaurus), a wild cattle, in most habitats where they are present, is still unknown. As the use of camera traps in wildlife studies are widespread, I developed photographic individual identification procedures and utilized encounter histories of gaur individuals from camera trap data to estimate gaur abundance and density using the spatially explicit capture-recapture analysis. The study was conducted at Kuiburi National Park, southwestern Thailand, comprised of dry evergreen forest, moist evergreen forest, and man-modified secondary forest during November 2013- January 2015. I conducted 71 direct observations in a savannah-like habitat area to observe …

Constraining Neogene Temperature And Precipitation Histories In The Central Great Plains Using The Fossil Record Of Alligator, Evan Whiting

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Most amphibians and reptiles (excluding birds) are poikilothermic; their internal body temperature varies with that of their external environment. This makes them useful as climate proxies, especially when linked to geographic distributions of ambient climate. I evaluate the utility of the extant crocodylian genus Alligator as a paleoclimate proxy for the Central Great Plains (CGP) using species distribution modeling. Alligator is a readily identifiable taxon with a good CGP fossil record during the Neogene (~23–2.6 Ma). Alligator first appeared in the CGP in the late Eocene (~37 Ma), was absent during most of the Oligocene, reappeared in the early Miocene …

Evolutionary Responses Of Invasive Grass Species To Variation In Precipitation And Soil Nitrogen, Monica A. Nguyen, Amy E. Ortega, Quoc L. Nguyen, Sarah Kimball, Michael L. Goulden, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

1.Global climate models suggest that many ecosystems will experience reduced precipitation over the next century and the consequences for invasive plant performance are largely unknown. Annual invasive species may be able to quickly evolve traits associated with drought escape or tolerance through rapid genetic changes.

2.We investigated the influence of five years of water and nitrogen manipulations on trait values in a southern California grassland system. Seeds from two annual grass species (Avena barbata, Bromus madritensis) were collected from experimental plots and grown in a common environment over two generations. We measured 14 physiological, morphological, phenological, and …

Developing Probability Maps For Locating And Scouting Unprotected Areas Of Gravel Hill Prairies On Rodman Soils Along The Wabash River Valley Near Lafayette, Indiana, Ryan W.R. Schroeder

Engagement & Service-Learning Summit

No abstract provided.

Marine Ecoregion And Deepwater Horizon Oil Spill Affect Recruitment And Population Structure Of A Salt Marsh Snail, Steven C. Pennings, Scott Zengel, Jacob Oehrig, Merryl Alber, T. Dale Bishop, Donald R. Deis, Donna Devlin, A. Randall Hughes, John J. Hutchens, Jr., Whitney M. Kiehn, Caroline R. Mcfarlin, Clay L. Montague, Sean P. Powers, C. Edward Proffitt, Nicholle Rutherford, Camille L. Stagg, Keith Walters

University Faculty and Staff Publications

Marine species with planktonic larvae often have high spatial and temporal variation in recruitment that leads to subsequent variation in the ecology of benthic adults. Using a combination of published and unpublished data, we compared the population structure of the salt marsh snail, Littoraria irrorata, between the South Atlantic Bight and the Gulf Coast of the United States to infer geographic differences in recruitment and to test the hypothesis that the Deepwater Horizon oil spill led to widespread recruitment failure of L. irrorata in Louisiana in 2010. Size-frequency distributions in both ecoregions were bimodal, with troughs in the distributions consistent …

Success Stories And Emerging Themes In Conservation Physiology, Christine L. Madliger, Steven J. Cooke, Erica J. Crespi, Jennifer L. Funk, Kevin R. Hultine, Kathleen E. Hunt, Jason R. Rohr, Brent J. Sinclair, Cory D. Suski, Craig K. R. Willis, Oliver P. Love

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The potential benefits of physiology for conservation are well established and include greater specificity of management techniques, determination of cause–effect relationships, increased sensitivity of health and disturbance monitoring and greater capacity for predicting future change. While descriptions of the specific avenues in which conservation and physiology can be integrated are readily available and important to the continuing expansion of the discipline of ‘conservation physiology’, to date there has been no assessment of how the field has specifically contributed to conservation success. However, the goal of conservation physiology is to foster conservation solutions and it is therefore important to assess whether …

A Bat-Guano-Derived Δ15N And Δ13C Record Of Paleoenvironmental Change: Zidită Cave, Romania, Daniel Martin Cleary

USF Tampa Graduate Theses and Dissertations

Because nitrogen isotopes are fractionated along the soil-plant-insect-bat-guano pathway, it may be possible to reconstruct environmental and climatic changes reflected in the nitrogen isotopic composition of guano. A 1.5-m core of bat guano from Zidită Cave (western Romania) provides a record of climatic and anthropogenic influence on the regional nitrogen cycle and paleoenvironmental controls on nitrogen transforming processes. Increasing and decreasing trends of nitrogen isotopic composition (δ¹⁵N values) correspond well with changes in the influence of farming practices, deforestation, and forest expansion. These influences likely had a significant effect on the openness of the nitrogen cycle, resulting in …

Radiocarbon Isotopic Classification Of Deep Tropical Forest Soils, Brooke Butler, Karis J. Mcfarlane, Jennifer Pett-Ridge, Katherine A. Heckman

STAR Program Research Presentations

Tropical forest soils have an important role in global carbon (C) stocks. Small changes in the cycling of C could drastically affect atmospheric carbon dioxide (CO2) concentrations and active cycling of carbon in a forest community. Currently, little is understood of how tropical forest soils will respond to the increasing global temperatures. To examine the effects of warming/ drought on losses of older versus younger soil C pools, we implemented radiocarbon (14C) isotopic characterization of various soil plot samples and depths from the Luquillo Experimental Forest, Puerto Rico. 14C was measured using Accelerated Mass Spectrometry (AMS) from catalytically condensed carbon …

Ecology And Morphology Of The Late Miocene Musk Deer, Longirostromeryx Wellsi (Artiodactyla: Moschidae: Blastomerycinae), Katheryn Y. C. Chen

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Longirostromeryx wellsi, one of the latest surviving members of the extinct clade Blastomerycinae (Artiodactyla: Moschidae), possesses highly derived craniodental morphology that deviates from typical musk deer form. Previous work suggests that the unique anatomy of L. wellsi represents adaptations for occupying open savannas. To test this hypothesis I conduct principal components analysis on five postcranial bones of L. wellsi, comparing them to that of several extant ruminant artiodactyls, which are divided among seven habitat categories. These elements are also compared with the postcrania of other blastomerycines. These analyses indicate that L. wellsi anatomy is most similar to that of other …

Haverstraw Bay Benthic Habitat Characterization, Robert M. Cerrato, Alison M. Flanagan, Roger D. Flood

School of Marine & Atmospheric Sciences Faculty Publications

High-resolution backscatter and bathymetric maps created by multibeam and sidescan sonar surveys were used to identify five different seafloor bottom types within Haverstraw Bay. Grab samples were collected within these areas to characterize sediment properties and macrofauna. Selected sampling locations were revisited and seafloor images were obtained with an HD underwater camera. Multivariate analysis was used to identify the most important factors explaining variations in community structure. Results indicated that categorical variables defining bottom types, grain size, and water depth can explain about 42% of community structure variation. In addition, shell length data collected for Rangia cuneata, an introduced …

Horticultural Escape And Naturalization Of Magnolia Tripetala In Western Massachusetts: Biogeographic Context And Possible Relationship To Recent Climate Change, Jesse Bellemare, Claudia Deeg

Biological Sciences: Faculty Publications

No abstract provided.

Speed And Resolution In The Age Of Technological Reproducibility, Shawn Taylor

Theses and Dissertations

The rate of acceleration of the biologic and synthetic world has for a while now, been in the process of exponentially speeding up, maxing out servers and landfills, merging with each other, destroying each other. The last prehistoric relics on Earth are absorbing the same oxygen, carbon dioxide and electronic waves in our biosphere as us. A degraded .jpeg enlarged to full screen on a Samsung 4K UHD HU8550 Series Smart TV - 85” Class (84.5” diag.). Within this composite ecology, the ancient limestone of the grand canyon competes with the iMax movie of itself, the production of Mac pros, …

Recovery Potential Of The Mussel Communities In The Lower Section Of Big Walnut Creek, Jared B. Ellenbogen

Undergraduate Honors Thesis Projects

Since the enactment of the 1977 Clean Water Act, biologists have created numerous multimetric assessment tools to evaluate the biological integrity of water resources, using biological criteria. The integrity of Big Walnut Creek, Ohio, has been in flux since the 1955 construction of Hoover Dam, and while current water quality is high, mussel communities in the creek have yet to recover to historical levels. This study sought to determine the cause of the decline in the mussels in the lower section of the creek below the dam. Historical creek data, including a fish-based index of biotic integrity (f-IBI), invertebrate community …

Provisioning And Its Effects On The Social Interactions Of Tibetan Macaques (Macaca Thibetana) At Mt. Huangshan, China, Brianna I. Schnepel

All Master's Theses

The dispersal patterns of food resources has a significant effect on the composition of primate groups and social interactions within those groups. Humans often alter the dispersal of food. Non-humans often use affiliative behaviors to elicit tolerance or support from other group members. I investigated whether provisioned food resources alter the social interactions and group dynamics of Macaca thibetana. All-occurrence sampling and scan sampling were used for data recorded by camera traps. Trail-cameras were placed at six locations that contain natural and human food resources and recorded 60-second videos. Social behavior and proximity of the monkeys were recorded. I …

Improving The Efficacy Of Web-Based Educational Outreach In Ecology, Gregory R. Goldsmith, Andrew D. Fulton, Colin D. Witherill, Javier F. Espeleta

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Scientists are increasingly engaging the web to provide formal and informal science education opportunities. Despite the prolific growth of web-based resources, systematic evaluation and assessment of their efficacy remains limited. We used clickstream analytics, a widely available method for tracking website visitors and their behavior, to evaluate 60,000 visits over three years to an educational website focused on ecology. Visits originating from search engine queries were a small proportion of the traffic, suggesting the need to actively promote websites to drive visitation. However, the number of visits referred to the website per social media post varied depending on the social …