Other Ecology and Evolutionary Biology Commons^™

Mark-Recapture Study And Habitat Assessment For The Northern Metalmark Butterfly, Calephelis Borealis (Lepidoptera: Riodinidae), Weston J. Henry, Kristian S. Omland, Henry Frye, Wagner L. David

EEB Articles

Background: The northern metalmark (Calephelis borealis), is an exceedingly local, globally rare butterfly that is declining across the Midwestern and Northeastern USA. The principal stressors driving colony losses include afforestation and invasive plants that crowd out its larval hostplant (Packera ovata) and nectar resources.

Aims/Methods: To better understand its declines and guide restoration efforts, we 1) performed a mark-recapture study in Connecticut to document population trends where we were actively managing vegetation; 2) conducted a range-wide survey for evidence of phylogeographic structure, using cytochrome oxidase (CO1); 3) investigated abundance determinants of its larval foodplant, Packera ovata …

Conservation, Comparative Genomics And Species Delimitation Of The Reindeer Lichens (Cladonia), Jordan R. Hoffman

Dissertations, Theses, and Capstone Projects

The genus Cladonia represents one of the most speciose genera of lichenized fungi, with more than 500 known species encompassing a diverse array of morphologies and habits. These lichens form keystone species in many habitats, serving a variety of ecological roles. However, despite being among of the more well studied lichens, there is much still unknown or under-studied about them. As is the case with most lichen study systems, phylogenetic study has been limited to a small number of partial loci, while adoption of next-generation sequence methods has been slow. As a consequence, there are still knowledge gaps in Cladonia …

Getting To The Root Cause: The Genetic Underpinnings Of Root System Architecture And Rhizodeposition In Sorghum, Farren Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Plants are some of the most diverse organisms on earth, consisting of more than 350,000 different species. To understand the underlying processes that contributed to plant diversification, it is fundamental to identify the genetic and genomic components that facilitated various adaptations over evolutionary history. Most studies to date have focused on the underlying controls of above-ground traits such as grain and vegetation; however, little is known about the “hidden half” of plants. Root systems comprise half of the total plant structure and provide vital functions such as anchorage, resource acquisition, and storage of energy reserves. The execution of these key …

Global Population Divergence Of A Cosmopolian Desert Plant, Victor Ryan Alfaro

Biology ETDs

Genetic and phenotypic variation can have different patterns within a species if it has populations with contrasting histories. Populations can have discrete differences that are shaped by different evolutionary scenarios, but within each population, range, or region, traits and association with fitness can also be affected by both edaphic and landscape variation. For my dissertation, I surveyed and experimentally analyzed variation and adaptive potential in Sahara mustard (Brassica tournefortii), a desert annual that has endemic, invasive, and agricultural populations in Africa, Asia, and the Americas. Although my multi-trait analysis generated complex results, my findings can be applied to …

Effects Of Wetland Management And Associated Abiotic Factors On Rare Plant Communities Of Spring-Fed Arid Wetlands, Antonio Cantu De Leija

LSU Master's Theses

Spring-fed arid wetlands support high biological productivity and are hotspots for endemism and distribution of rare plants, making them areas of high conservation value. These systems are driven by complex interactions among groundwater discharge and the geomorphic and climatic features of the setting, which provide gradients of edaphic conditions, particularly soil moisture and salinity that influence the presence and abundance of rare plant communities. However, spring-fed arid wetlands are at particular risk of increases in salinity and drier hydrological regimes due to anthropogenic activities. Such alterations to abiotic conditions may jeopardize the distribution and abundance of rare plants by exceeding …

Dna Barcoding Of The High-Altitude Artemisia And Nepeta Species, Vyacheslav Dushenkov, Csanad Gurdon, Shukhratdzhon Satorov

Publications and Research

DNA barcoding was performed for four medicinal plant species from the mountain region of Tajikistan. The nucleotide sequences for Artemisia sieberi, Artemisia scoparia, Artemisia vulgaris, and Nepeta glutinosa were deposited into the GenBank at the National Center for Biotechnology Information.

Not All Pollinator Gardens Are Created Equally: Determining Factors Pertinent To Improving Pollinator Garden Effectiveness, Travis Watson

Electronic Theses and Dissertations

Increasing evidence documenting the decline of insect populations, resulting from increasing human disturbances has resulted in efforts to establish pollinator gardens to provide additional resources for insect populations. However, our understanding of biotic and abiotic garden characteristics important for attracting and sustaining pollinator diversity is limited. Here, we evaluated 17 pollinator gardens to evaluate the effect of five biotic and three abiotic garden characteristics on pollinator species richness, abundance, and proportional representation of four pollinator functional groups. Plant species richness positively influenced pollinator richness and negatively influenced flower visitation. Bombus proportional abundance responded to several variables (distance to vegetation, plant …

Discovery Of Epiphytic Lichens In Connecticut Suggests Novel Introduction And Reintroduction Via Horticultural Practices, Henry A. Frye, Zachary Muscavitch, Bernard Goffinet

EEB Articles

The discovery of Teloschistes chrysophthalmus in Connecticut more than one hundred years since its last known occurrence is argued to result from human introduction. The species only occurred on the horticultural tree, Gleditsia triacanthos var. inermis, planted on the University of Connecticut campus. Gleditsia triacanthos is not indigenous to northeastern North America, but is widespread in the central United States. Other epiphytic macrolichens also recorded on this phorophyte include Punctelia bolliana and Parmotrema austrosinense, both widespread in the central United States, and new to Connecticut and New England, respectively. This is likely the first reported case of combined …

Characterizing Patterns In Texas Gulf Coast Beach Dune Plant Species Composition, Cody Foster

Electronic Theses and Dissertations

Regional vegetation patterns of Texas beach plant communities were analyzed using cluster analysis, ANOSIM, SIMPER, NMDS, and ISA for fives zones representing the foredune complex of twenty Gulf Coast beaches. ANOVA revealed that zones differ in terms of percent bare sand, percent vegetative cover, and species richness. Cluster Analysis, ANOSIM, and SIMPER results indicate that Texas beaches can be divided into northern and southern regions based on differences in species composition of plant communities. Indicator Species Analysis (ISA) indicates that northern beaches are characterized by the presence of Rayjacksonia phyllocephala, Ambrosia Strophostyles, Ambrosia psilostachya, and Panicum amarum …

Trilepisium (Moraceae): Four New Species From Madagascar, Shawn Kelley

Theses

Trilepisium is a genus of tree with two member species: T. madagascariense and T. gymnandrum. This genus shows diversity in habit and morphology greatly exceeding that expected of a genus with two member species. Concerted collection efforts since the last revision have suggested there are several unrecognized species within Trilepisium and a revision is needed. Chapter one of this thesis details the history of this taxanomically challenging genus and presents the results of our study of 600 Malagasy herbarium specimens. Trilepisium is more adequately circumscribed as containing 17 species, 11 of which are new to science. Chapter two contains …

Spatio-Temporal Dynamics Of Fungal Communities And Their Effects On Plants, Kel Cook

Biology ETDs

Fungi perform several critical functions in the environment. Spatiotemporal distributions of fungal communities will mediate when and where these functions happen and how they vary across the landscape. I first explored tropical tree canopy fungal community variation at small spatial scales and documented near total turnover of fungi across sub-meter distances and among adjacent substrates. The second chapter analyzed fungal turnover over the course of three years, where community stability was driven primarily by abundant fungi. In the third chapter, I tested effects of the environment, including host plant and habitat, on canopy fungal communities and found only small effects, …

Leaf Traits And Performance Vary With Plant Age And Water Availability In Artemisia Californica, Jennifer L. Funk, Julie E. Larson, Gregory Vose

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Background and aims
Leaf functional traits are strongly tied to growth strategies and ecological processes across species, but few efforts have linked intraspecific trait variation to performance across ontogenetic and environmental gradients. Plants are believed to shift towards more resource-conservative traits in stressful environments and as they age. However, uncertainty in how intraspecific trait variation aligns with plant age and performance in the context of environmental variation may limit our ability to use traits to infer ecological processes at larger scales.

Methods
We measured leaf physiological and morphological traits, canopy volume, and flowering effort for Artemisia californica (California sagebrush), a …

A Basic Ddradseq Two‐Enzyme Protocol Performs Well With Herbarium And Silica‐Dried Tissues Across Four Genera, Ingrid E. Jordon-Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels

Faculty Journal Articles

Premise

The ability to sequence genome‐scale data from herbarium specimens would allow for the economical development of data sets with broad taxonomic and geographic sampling that would otherwise not be possible. Here, we evaluate the utility of a basic double‐digest restriction site–associated DNA sequencing (ddRADseq) protocol using DNAs from four genera extracted from both silica‐dried and herbarium tissue.

Methods

DNAs from Draba, Boechera, Solidago, and Ilex were processed with a ddRADseq protocol. The effects of DNA degradation, taxon, and specimen age were assessed.

Results

Although taxon, preservation method, and specimen age affected data recovery, large phylogenetically informative …

Diversity And Ethnobotanical Importance Of Pine Species From Sub-Tropical Forests, Azad Jammu And Kashmir, Kishwar Sultana, Sher Wali Khan, Safdar Ali Shah

Journal of Bioresource Management

A general investigation of sub-tropical forests, from Pir Chinasi National Park, Tolipir National Park, Dhirkot Nature Reserve and Banjosa Game Reserve was carried out during different months from February 2008 to May 2010. The relative abundance of species was calculated using line transects of 50m. A total of five different species (Abies pindrow. Cedrus deodara, Pinus wallichiana, Pinus roxburgii and Picea smithiana) from the Pinaceae family were recorded. The main reported use of Cedrus deodara and Pinus wallichiana by the local people was for furniture and construction purposes. Pinus wallichiana was observed as the dominant …

The Chumash Heritage National Marine Sanctuary: An Exploration Of Changing The Discourse On Conservation, Arielle Ben-Hur

Pitzer Senior Theses

In 2015, the Northern Chumash Tribal Council submitted a National Marine Sanctuary Nomination to establish the Chumash Heritage National Marine Sanctuary– a means by which to ensure the protection of one of the most culturally and biologically diverse coastlines in the world. On October 5, 2015, John Armor of the National Oceanic and Atmospheric Administration (NOAA) responded to the nomination, adding it to the inventory of areas NOAA may consider in the future for national marine sanctuary designation.

In my thesis, I explore how the nomination of the Chumash Heritage National Marine Sanctuary acts as a platform from which Traditional …

Impacts Of Rock Climbing On Lichen And Bryophyte Cliff Communities In The Arid West, Giovanna M. Bishop

2020 Symposium Posters

Lichens and bryophytes make up the majority of the diversity and cover in cliff systems around the world. Recently, with the rapid rise of rock climbing, there are concerns rock climbers are negatively impacting cliff communities. My study will compare climbed and unclimbed granite cliffs to better understand the impacts of rock climbing on lichen and bryophyte diversity and cover in eastern Washington. The objectives of this study are to assess the impacts of rock climbing on lichen and bryophyte cliff community diversity and cover and improve route development and cliff management practices for lichens and bryophytes. This study will …

The Effects Of Woody Vegetation Encroachment And Removal Within A Coastal Fen, Joseph Saler

Cal Poly Humboldt theses and projects

Early successional wetland habitat is being lost in temperate regions worldwide as a result of changes in disturbance regimes that allow for the establishment and dominance of woody species. In particular, this phenomenon is pronounced in fens, which harbor high numbers of rare herbaceous species that require early successional habitat. I investigated the relationship between woody vegetation encroachment and herbaceous species diversity within a Northern California coastal fen that has been undergoing encroachment by woody vegetation for ca. 80 years by recording species richness and cover data from 338 permanent plots throughout the fen. I also investigated the effect of …

Vines In The Neotropics: Phylogenomics, Biogeography And Systematics In Passion Flowers (Passiflora Subgenus Decaloba Section Decaloba), Serena Acha

Dissertations

With 600 species, Passiflora is a large, morphologically complex and broadly distributed genus in Passifloraceae that represents a major challenge to scientists interested in understanding the evolutionary history of tropical vines. Passiflora has been divided into subgenera, super sections and sections. One of the most enigmatic and species-rich (~120 spp.) groups in Passiflora is section Decaloba, which occurs in the Neotropics and is particularly diverse in Andean montane forests. In this study, we used phylogenomic and population genomic approaches to investigate the evolutionary history, biologeography, species boundaries, and taxonomy of Passiflora section Decaloba. We sampled herbarium specimens, extracted …

Quantifying Pollen Traits To Build A Mathematical Model Of Pollen Competition - A Biologist's Perspective, Rob Swanson, Alex Capaldi

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Diffuse Light And Wetting Differentially Affect Tropical Tree Leaf Photosynthesis, Z. Carter Berry, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

‐Most ecosystems experience frequent cloud cover resulting in light that is predominantly diffuse rather than direct. Moreover, these cloudy conditions are often accompanied by rain that results in wet leaf surfaces. Despite this, our understanding of photosynthesis is built upon measurements made on dry leaves experiencing direct light.

‐Using a modified gas exchange setup, we measured the effects of diffuse light and leaf wetting on photosynthesis in canopy species from a tropical montane cloud forest.

‐We demonstrate significant variation in species‐level response to light quality independent of light intensity. Some species demonstrated 100% higher rates of photosynthesis in diffuse light …

Integrated Pest Management In The Academic Small Greenhouse Setting: A Case Study Using Solanum Spp. (Solanaceae)., Daniel S. Hayes, Ingrid E. Jordon-Thaden, Jason T. Cantley, Angela J. Mcdonnell, Christopher T. Martine

Faculty Journal Articles

Premise

Botanical faculty and staff at academic institutions are often tasked with establishing and/or caring for plant collections held in small greenhouse facilities. Once plants are in place, an especially acute challenge is managing plant pest/pathogen populations. Integrated pest management (IPM) approaches are an excellent option, but few examples exist in the literature of successful programs that have been developed in academic small greenhouse settings.

Methods and Results

Over several years, we developed an IPM program for two small research greenhouses on the campus of a primarily undergraduate institution where hundreds of plants have been grown for studies in the …

Warming Up: Climate Change Related Shifts Of Mycorrhizal Fungal Communities In High Latitude Ecosystems, Megan Rae Devan

Biology ETDs

This dissertation examines how climate change affects mycorrhizal fungal communities in boreal and arctic ecosystems. In chapter one, I revealed that increases in fire severity and related increases in deciduous tree dominance result in greater Ascomycota relative abundance (RA) and subsequent declines in Basidiomycota RA. In chapter two I analyzed the effects of post-fire mycorrhizal fungal communites on host growth. There were trends at the fungal genus level that were largely reflected at the guild level across all hosts; however, there were some fungal genera that had the opposite effect on different host species. In chapter three, I found host …

Fire And Road Disturbance Impacts On Forest Plant Species And Seed Rain In Table Mountain Fire Arai, Kittitas County, Washington, Jonathan A. Betz

All Master's Theses

Forest communities are in a constant state of change. Disturbance events can alter the physical landscape and create conditions favorable to some species while negatively impacting others. Fire has been a natural, reoccurring source of disturbance in Pacific Northwest forests. Over the past centuries the fire paradigm has changed in favor of fire suppression. Forest roads permit access provide greater access but further fracture forest community’s continuity. The 2012 Table Mountain Fire and road influence have altered the plant community’s seed rain and vegetation. This study measured dispersed seeds and understory vegetation cover as functions of roads and fire intensity. …

Competition Or Facilitation: Examination Of Interactions Between Endangered Sida Hermaphrodita And Invasive Phragmites Australis, Samantha N. Mulholland

Theses and Dissertations (Comprehensive)

Virginia Mallow (Sida hermaphrodita) is a perennial herb of the Malvaceae family that is native to riparian habitats in northeastern North America. Throughout most of its geographical distribution however, it is considered threatened and only two populations are known from Canada. The biology and ecology of S. hermaphrodita are still poorly understood and although few studies have been performed to determine the factors that contribute to the species rarity, it is considered threatened potentially due to the loss of habitat caused by exotic European Common reed (Phragmites australis subsp. australis) invasion. Allelopathic and phytotoxic conditioning of …

A Quantitative Analysis Of The Effects Of Urbanization, Mesophication And Prescribed Burns On Oak Woodlands In The Chicago Metropolitan Area, Chad Populorum

Celebration of Learning

Urban expansion has had devastating impacts on forest ecosystems, especially within the past century. Human attempts to dominate nature have diminished natural disturbance regimes, which have maintained the biodiversity and historic composition of these ecosystems. Fires have been a prominent force in maintaining the structure of oak, hickory and other heliophytic (sun loving and fire-adapted) forest systems. Human induced fire suppression has led to mesophication across North America. Mesophication is the transition from drier conditions with open canopies to wetter conditions with closed canopies. These new conditions decrease the survival rates of these important species and begin to favor mesophytic …

A Contribution Toward A Global Monograph Of Gyroporus: Taxonomy, Phylogeny, Biogeography, Naveed Davoodian

Dissertations, Theses, and Capstone Projects

Gyroporus (Sclerodermatineae, Boletales, Agaricomycetes, Basidiomycota, Fungi) is a genus of ectomycorrhizal mushroom-forming fungi distributed throughout the world in suitable habitats. Previous attempts to untangle the diversity of this genus proved difficult due to the presence of semi-cryptic species and equivocal results from phylogenetic analysis of ribosomal RNA markers. To overcome these obstacles, a combined taxonomic and phylogenetic (emphasizing protein-coding genes) approach is used here to delimit species and elucidate geographic and evolutionary patterns of Gyroporus. Careful study of relevant literature and herbarium specimens was augmented by field work in North America, Australia, and East Asia for observation and collection …

The Tensile Root Strength Of Emergent Coastal Macrophytes, Lauris Olivia Hollis

LSU Doctoral Dissertations

Spartina patens is a dominant emergent macrophyte in fresh, intermediate, and brackish marshes along the Atlantic and Gulf coasts of United States where its biomechanical properties are a key component of wetland health and resilience. Its root biomass and tensile root strength are essential for anchorage, erosion protection, and are important determinants of soil strength. Nutrients and the herbicide atrazine are suspected of negatively impacting this wetland plant and others. The objectives of this study were to: 1) ascertain the tensile root strength of five emergent coastal macrophytes in coastal estuaries, and 2) test the effects of nutrient addition, atrazine …

Jeweled Spider Flies (Eulonchus Tristis) Are Important Pollinators Of Iris Bracteata, A Rare Siskiyou Mountain Endemic, Jean-Paul E. Ponte

Cal Poly Humboldt theses and projects

Little is known about the pollination biology of the Pacific Coast Irises (Iris: series Californicae, hereafter PCI), especially who visits and pollinates their flowers. In general, Iris flowers are considered bee-pollinated, however, flies in the genus Eulonchus (Acroceridae) are known to visit some PCI members. Therefore, I assessed the relative importance of Eulonchus and other insect visitors to the pollination of a rare PCI species native to the Siskiyou Mountains, I. bracteata.

Methods. I quantified pollinator importance for all flower visitors at sites in northern California and southern Oregon as the product of average visit rate and …

Investigating The Ecology Of A Rare Species On St. John, Usvi: Reintroducing Solanum Conocarpum In Light Of Climate Change, Cecilia Rogers

Senior Honors Projects, 2010-2019

Approximately two thirds of St. John is National Park territory. However, the land has been threatened with tourism and development, greatly impacting island biodiversity. One species that may become extinct due to this degradation is Solanum conocarpum. S. conocarpum is a rare shrub, endemic to the dry tropical forests of St. John, USVI. This plant is a species of conservation concern and is one of very few native and endemic plants on this island. Very little is known about the ecology and reproduction of S. conocarpum. Most plants are found on the southern half of the island. Recent observations …

Evolution Of Floral Morphology And Symmetry In The Miconieae (Melastomataceae), Maria Gavrutenko

Dissertations and Theses

Analyses of evolution of floral morphology and symmetry broaden our understanding of the drivers of angiosperm diversification. Integrated within a flower, labile floral characters produce different phenotypes that promote variable interactions with pollinators. Thus, investigation of floral evolution may help infer potential historic transitions in pollinator modes and ecological pressures that generated present diversity. This study aims to explore morphological evolution of flowers in Miconieae, a species-rich Neotropical tribe within family Melastomataceae. Despite a constrained floral plan, Melastomataceae manage to achieve a variety of floral traits appealing to diverse pollinator types, with majority of the species requiring specialized “buzz pollination” …