Other Ecology and Evolutionary Biology Commons^™

Nitrogen Availability In Dune Systems And Its Effect On Root Fungal Endophyte Communities., Haley E. Sage

College of Arts & Sciences Senior Theses

As global change persists, changes in resource availability can influence plant-microbe interactions. To understand how resource availability can influence these interactions and species diversity, I focused this research on how varying nitrogen (N) levels affect root endophyte communities in the plant species Ammophila breviligulata, an ecosystem engineer in the dune system. I analyzed the relationship between nitrogen addition and microbial community composition across 60 plots treated with three nitrogen addition levels (control, low, and high) in a long-term experimental field site in the Lake Michigan dunes. I identified Ammophila breviligulata's root endophyte community after creating a culture collection and …

Characterization Of Streptomyces Nymphaeiformis Sp. Nov., And Its Taxonomic Relatedness To Other Polyhydroxybutyrate-Degrading Streptomycetes, Gary R. Hix, Muhammad S. Khan, Mikayla T. Miller, Elisha C. Napier, Allison L. O'Brien, Roger P. White, Stephen F. Baron Ph.D.

Biology Faculty Scholarship

A polyhydroxybutyrate (PHB)-degrading actinomycete, strain SFB5A^T, was identified as a species of Streptomyces based on its membrane fatty acid profile and the presence of LL-diaminopimelic acid in the cell wall. It formed sporulating mycelia on most agar media, but flat or wrinkled, moist colonies on trypticase soy agar. Spores were smooth, cylindrical, and borne on long, straight to flexuous chains. It produced a light brown diffusible pigment, but not melanin. Comparison of genomic digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values indicated that strain SFB5A^T was related to Streptomyces litmocidini JCM 4394^T , Streptomyces …

The Role Of Leaf Decomposition In Macroinvertebrate Colonization, Bethany Mabel Lian Schorr, Kevin Geedey

Independent Research Projects

Decomposition plays an important ecological role in carbon and nutrient cycling that supply food and energy resources to food webs. This study investigates the potential role that leaf decomposition of different leaf species may play in macroinvertebrate assemblages in upper Midwest streams. We hypothesized that the different decomposition rates experienced with different leaf species and in different streams would have an effect on invertebrate colonization due to the variance in nutrient availability. Due to altered fire regimes and other influences, forests are experiencing declines in fire-adapted, heliophytic species such as oaks and compositional shifts toward shade-tolerant, mesophytic species such as …

Mark-Recapture Study And Habitat Assessment For The Northern Metalmark Butterfly, Calephelis Borealis (Lepidoptera: Riodinidae), Weston J. Henry, Kristian S. Omland, Henry Frye, Wagner L. David

EEB Articles

Background: The northern metalmark (Calephelis borealis), is an exceedingly local, globally rare butterfly that is declining across the Midwestern and Northeastern USA. The principal stressors driving colony losses include afforestation and invasive plants that crowd out its larval hostplant (Packera ovata) and nectar resources.

Aims/Methods: To better understand its declines and guide restoration efforts, we 1) performed a mark-recapture study in Connecticut to document population trends where we were actively managing vegetation; 2) conducted a range-wide survey for evidence of phylogeographic structure, using cytochrome oxidase (CO1); 3) investigated abundance determinants of its larval foodplant, Packera ovata …

Morphological Variation And Community Science In Orthoptera, Amy Byerly

Electronic Theses and Dissertations

Patterns of morphological divergence across species’ ranges provide insight into local adaptation and speciation. Here, we compare phenotypic divergence among 4,221 crickets from 337 populations of two related species of field cricket, Gryllus firmus and G. pennsylvanicus and their hybrids. We find that these species differ across their geographic range in key morphological traits, such as body size and ovipositor length, and we directly compare phenotype with genotype for a subset of crickets demonstrating nuclear genetic introgression, phenotypic intermediacy of hybrids, and essentially unidirectional mitochondrial introgression. We discuss how these morphological traits relate to life history differences between the species. …

Phylogenetic And Geographic Relationships Of Cheilostome Bryozoans In The Eastern Pacific, Hannah E. Lee

Cal Poly Humboldt theses and projects

The phylum Bryozoa is an incredibly diverse group of marine invertebrates with a widespread global distribution that is well suited for evolutionary studies but whose phylogenetic relationships are still poorly understood. Although recent studies on bryozoan taxonomies and phylogenies have increased, there is still a lack of assessment of species found at shallow water (<1 m) to intertidal depths. In this study, I aimed to expand the taxonomic sampling and assessment of the phylogenetic diversity of cheilostome bryozoans along the California coastline by utilizing mitochondrial DNA as well as inferring potential correlations between species presence and dispersal range both within and between rocky outer coast and sheltered harbor habitats. Illumina high-throughput sequencing was used to produce mitogenomes for cheilostome bryozoan samples collected off rocks from two rocky intertidal sites and off settlement panels from two harbor sites. Phylogenetic analyses generated evolutionary hypotheses of species relationships alongside geographic mapping of their distribution. This study identified 15 distinct species that represent 10 different families to form the first comprehensive phylogeny for multiple bryozoan families in California across a total range of approximately 973 km of coastline. Three genetically distinct species were found at multiple sites that are separated by a combination of rocky shores and sandy beaches, which indicates that the dispersal range of these species are not limited by geographic barriers along the coast of California. These results provide a future opportunity for further integration of this data with the phylogenies generated in this study to examine more robust evolutionary hypotheses for the phylogenetic and geographic relationships of Californian bryozoan species.

Population Structure Of The Lizard Ecpleopus Gaudichaudii Coincides With A Biogeographic Barrier - The Doce River, Alexander J. Garretson

Dissertations and Theses

Intraspecific genetic variation is an integral component of diversification and the accumulation of biodiversity. The degree to which isolated populations of the same species are genetically structured in geographical space is impacted by a variety of mechanisms. In this study, I document patterns and discuss possible drivers of genetic structure within Ecpleopus gaudichaudii, a lizard species endemic to the Atlantic Forest of Brazil. For that, I assembled ddRadseq sequences from 48 individuals across much of the range of the E. gaudichaudii and analyzed its population structure. I created an intraspecific phylogeny for this group utilizing RAxML and conducted a …

Effects Of Dissimilar Silvicultural Techniques On Small Mammal Communities In Michigan's Upper Peninsula, Breanna R. Gusick

Dissertations, Master's Theses and Master's Reports

Small mammal populations, and predators reliant upon them as food resources, are often challenged by conflicting objectives of timber production and maintenance of quality habitat. With over 70% of the landscape forested, and nearly one-third of the land privately owned, Michigan’s Upper Peninsula (UP) is a matrix of independent management strategies. To assess the effects of various silvicultural regeneration methods on small mammal populations in the Upper Peninsula, we trapped small mammals in experimental silviculture plots, whereby treatments varied by regeneration method (amount of residual canopy cover) and site preparation (i.e., control, tip-up, and scarification), and deer exclosures. We used …

Getting To The Root Cause: The Genetic Underpinnings Of Root System Architecture And Rhizodeposition In Sorghum, Farren Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Plants are some of the most diverse organisms on earth, consisting of more than 350,000 different species. To understand the underlying processes that contributed to plant diversification, it is fundamental to identify the genetic and genomic components that facilitated various adaptations over evolutionary history. Most studies to date have focused on the underlying controls of above-ground traits such as grain and vegetation; however, little is known about the “hidden half” of plants. Root systems comprise half of the total plant structure and provide vital functions such as anchorage, resource acquisition, and storage of energy reserves. The execution of these key …

Free-Ranging And Feral Cats, Alex Dutcher, Kyle Pias, Grant Sizemore, Stephen M. Vantassel

Wildlife Damage Management Technical Series

Domestic cats (Felis catus) are a common household pet in the United States, with an estimated 25.4% of households owning cats (American Veterinary Medical Association 2018). While an increasing number of cat owners keep their pet cats exclusively indoors, a portion of society maintains that domestic cats are entitled to a free-ranging lifestyle and may even consider unowned domestic cats to be wildlife. Although wildlife managers recognize the beliefs of many concerned stakeholders, including advocates who use strong emotional appeals on behalf of cats, it remains that free-ranging and feral domestic cats are an invasive species spread by humans (Lowe …

Vertebrate Scavenger Diversity And Ecosystem Services Along An Elevational Gradient In Central Nepal, Aishwarya Bhattacharjee

Dissertations, Theses, and Capstone Projects

A growing number of studies recognize the ecological significance of vertebrate scavengers, and several species belonging to this diverse, functional guild are of high conservation importance around the globe. Studies on taxonomic and functional components of biodiversity often use elevation gradients to comprehensively examine patterns and drivers across multiple spatial scales. Yet, there are relatively few elevational studies on large vertebrates or multi-taxa guilds, and the related variation of their ecosystem services. In particular, scavenger research has largely focused on local-scale studies or regional/global comparisons of local-scale investigations. Moreover, these studies primarily consider taxonomic community characteristics and the patterns of …

Initial Assessment Of Potential Relationships Between Plant Communities And The Soil Microbiome In Closed Forest And Longleaf Pine Restoration Sites., Sean Davis, Ian Kennedy

Symposium of Student Scholars

Longleaf pine is an endangered ecosystem characterized by high levels of biodiversity.

Our study took place in the Sheffield Wildlife Management Area located in the Piedmont ecoregion of Georgia in Paulding County. Fifty plots of 10 x 30 m² were setup on south or north facing slopes, some in covered forest, and some in an area actively being restored for the longleaf pine. All trees above 1.37 m were identified and had their diameter measured, and species diversity, relative density, dominance, and frequency were determined. Herbaceous plant cover percentages were recorded in select plots. Soil samples were also collected …

Interspersed Denuded Zone (Idz): How Patchy Leaf Litter Dynamics In A Buckthorn-Invaded Urban Woodland Can Affect Microarthropod Species Richness, Angela Stenberg

DePaul Discoveries

Biodiversity loss may serve as a key diagnostic of the Anthropocene. An important driver of this loss is by means of invasive species. In this study of a forest preserve in Chicago, Illinois we examined Interspersed Denuded Zones (IDZs for short), which are areas of patchy leaf litter in invaded forests caused in this case by the rapid decomposition of litter from buckthorn (Rhamnus cathartica). We characterized the leaf litter mass in IDZs and enumerated litter-inhabiting microarthropod populations. We found that plots of high buckthorn density are associated with IDZs: there was significantly less leaf litter mass in …

Effects Of Wetland Management And Associated Abiotic Factors On Rare Plant Communities Of Spring-Fed Arid Wetlands, Antonio Cantu De Leija

LSU Master's Theses

Spring-fed arid wetlands support high biological productivity and are hotspots for endemism and distribution of rare plants, making them areas of high conservation value. These systems are driven by complex interactions among groundwater discharge and the geomorphic and climatic features of the setting, which provide gradients of edaphic conditions, particularly soil moisture and salinity that influence the presence and abundance of rare plant communities. However, spring-fed arid wetlands are at particular risk of increases in salinity and drier hydrological regimes due to anthropogenic activities. Such alterations to abiotic conditions may jeopardize the distribution and abundance of rare plants by exceeding …

Dna Barcoding Of The High-Altitude Artemisia And Nepeta Species, Vyacheslav Dushenkov, Csanad Gurdon, Shukhratdzhon Satorov

Publications and Research

DNA barcoding was performed for four medicinal plant species from the mountain region of Tajikistan. The nucleotide sequences for Artemisia sieberi, Artemisia scoparia, Artemisia vulgaris, and Nepeta glutinosa were deposited into the GenBank at the National Center for Biotechnology Information.

Understanding And Predicting The Distribution Of Biodiversity In The Atlantic Forest, Andrea Paz Velez

Dissertations, Theses, and Capstone Projects

Understanding how biodiversity is distributed in geography is essential for conservation. This requires an understanding of the multiple dimensions of biodiversity: species, their ecological functions, and their evolutionary history. For my Ph.D. dissertation, I devised a study to explore the environmental drivers of biodiversity patterns in Neotropical species. I first investigated broad macroecological patterns in the Brazilian Atlantic Forest, combining occurrence data and phylogenetic information from multiple clades of animals and plants (Chapter 1). I discovered that one can accurately predict the accumulation of species richness and phylogenetic diversity based on current climatic descriptors – particularly precipitation – but not …

Gray Wolves, Eric Gese, John P. Hart, Patricia Terletzky

Wildlife Damage Management Technical Series

Wolf conflicts are primarily related to predation on livestock, pets and other domestic animals, as well as their direct and indirect impacts on native ungulates (i.e., big game). Economic losses vary widely with some livestock producers facing high levels of depredation in some areas. This publication focuses on wolf ecology, damage, and management, particularly as it relates to wolf depredation on livestock and other conflicts with people.

Wolves and people share the same environments more than people realize. In the U.S., wolves are not confined to wilderness areas. Though curious, wolves generally fear people and rarely pose a threat to …

Not All Pollinator Gardens Are Created Equally: Determining Factors Pertinent To Improving Pollinator Garden Effectiveness, Travis Watson

Electronic Theses and Dissertations

Increasing evidence documenting the decline of insect populations, resulting from increasing human disturbances has resulted in efforts to establish pollinator gardens to provide additional resources for insect populations. However, our understanding of biotic and abiotic garden characteristics important for attracting and sustaining pollinator diversity is limited. Here, we evaluated 17 pollinator gardens to evaluate the effect of five biotic and three abiotic garden characteristics on pollinator species richness, abundance, and proportional representation of four pollinator functional groups. Plant species richness positively influenced pollinator richness and negatively influenced flower visitation. Bombus proportional abundance responded to several variables (distance to vegetation, plant …

Seasonal Plumage Condition Variation And The Thermal Value Of The Feather Coats Of House Sparrows (Passer Domesticus), Jordana Mf Graveley, Margaret Rubega, Kevin R. Burgio

Honors Scholar Theses

Feathers are critical to how birds thermoregulate, and thus their total energy balance. The feather coat insulates birds by trapping air next to the skin and acting as a physical barrier to heat loss. Despite previous work studying thermal balance in birds, relatively few studies have focused on the thermal contribution of the feather coat alone; most studies have focused on physiological and behavioral responses. Moreover, to our knowledge, no studies have directly measured the effect of feather wear through the annual cycle on the thermal performance of the feather coat. To address this, we used a thermal camera to …

Earth Law And The Rights Of Nature A New Generation Of Laws Built For Nature, Lindsey Kayman, Paul Bartlett, Milena Popov, Grant Wilson

Open Educational Resources

Earth Law and the Rights of Nature: A New Generation of Laws Built for Nature

Wilson, Grant, Kayman, Lindsey, Bartlett, Paul, and Milena Popov John Jay College of Criminal Justice, Earth Law Center, Environmental Education Fund

Forget doom and gloom. Let’s educate students about the Rights of Nature, an inspiring, evolving legal development which is gaining traction in the US and around the world, and which can promote the cultural shift needed to address our overlapping intersecting environmental crises — climate change, accelerating species extinction, and ecosystem collapse. The Rights of Nature is one aspect of Earth Law. Some of …

Ecological Impacts Of Apiaries, Lewis University

Sustainability

The Come Clean, Go Green competition is a program dedicated to making Lewis a more sustainable campus with ideas from Lewis Students across all disciplines. The program is sponsored by the Lewis University Sustainability Council and supported by, the sustainability fee, which was approved last year. The fee will fund the implementation of sustainability projects on campus that are chosen by students.

Monitoring For Wolves, Jeff Hansen, Cat Urbigkit

Wildlife Damage Management Technical Series

Gray wolves (Canis lupus) and Mexican wolves (Canis lupus baileyi) once again roam across landscapes where they have been absent for decades (Figure 1). With wolf range expansion comes increased opportunities for conflicts when wolves harass or prey on domestic livestock or other animals. Wolves have relatively high reproductive and dispersal rates but detecting individual animals in low-density populations is difficult without a concerted monitoring effort. In fact, wolf presence in an area often is not known until there is a confirmed livestock depredation. Ranchers and wildlife damage management experts need not wait for livestock depredations to occur before wolves …

Data Repository For "Use Of Redwood Basal Hollows By Bats: A Focus On The Townsend’S Big-Eared Bat On The North Coast Of California", Amon J. Armstrong

Research Data Sets

Loss of roosting resources, either through disturbance or removal, negatively affects bats. Identifying sensitive species and determining roost requirements are critical components in conserving their habitat. Cavity roosting bats on the North Coast of California are known to use hollows in large redwood trees. In this study, we examined the factors determining the use of basal tree hollows by different bat species at eight redwood forest sites in Del Norte, Humboldt, and Mendocino Counties, California. Bat guano was collected from 179 basal hollow roosts from 2017 to 2018, and guano mass was used as an index of roosting activity. Nine …

Jaguars And Pumas Exhibit Distinct Spatiotemporal Responses To Human Disturbances In Colombia’S Most Imperiled Ecoregion, Joe J. Figel, Sebastián Botero-Cañola, Juan David Sánchez-Londoño, Javier Racero-Casarrubia

University of Nebraska State Museum: Mammalogy Papers

Abstract

Coexistence of sympatric felids is facilitated by mutual avoidance and the partitioning of habitats, prey, and time. Anthropogenic disturbances disrupt this coexistence in fragmented landscapes, potentially triggering cascading influences in ecological communities. We used photographic data from 8,717 trap nights (November 2014–June 2016) at 87 camera trap sites in Colombia’s middle Magdalena River basin to compare spatiotemporal overlap among jaguars (Panthera onca), pumas (Puma concolor), their prey, and humans, at sites of high and low disturbance, as determined by the human influence index. Human disturbance events (e.g. domestic dogs, livestock, and humans, including armed hunters) …

The Reconstruction Of Hatchery Creek: Effects On Macroinvertebrate And Fish Community Dynamics, Patrick Vrablik

Murray State Theses and Dissertations

Hatchery Creek is a restored stream in Jamestown, KY that drains Wolf Creek National Fish Hatchery. The previous degraded channel of Hatchery Creek caused large sediment plumes in the Lower Cumberland River and was restored to decrease sediment loss and provide the opportunity for a self-sustaining trout population. I predicted that the increased amount of habitat would increase taxa richness, abundance and biomass of macroinvertebrates. Macroinvertebrates were monitored in three periods; the degraded period, a one-year recovery period, and a restored period using surber and kicknet samples in order to determine biomass, abundance, diversity, taxa richness, and macroinvertebrate biotic index. …

Common Raven Impacts On The Productivity Of A Small Breeding Population Of Snowy Plovers, Matthew J. Lau, Benjamin H. Becker, David T. Press

Human–Wildlife Interactions

Common ravens (ravens; Corvus corax), an adaptable, synanthropic generalist, have thrived coincident with increasing human landscape modifications and fragmentation, consequently affecting their prey, which are often sensitive native and protected species. Ravens are a conservation concern for the protected western snowy plover (plover; Charadrius nivosus nivosus), causing low nest and chick survival in some breeding areas along the Pacific coast of North America. We used a long-term dataset from a breeding snowy plover monitoring program in Point Reyes National Seashore (PRNS) to investigate potential impacts of ravens on snowy plover nest and fledging success. Between 2002 and 2020, …

A Desert Tortoise–Common Raven Viable Conflict Threshold, Kerry L. Holcomb, Peter S. Coates, Brian G. Prochazka, Timothy Shields, William I. Boarman

Human–Wildlife Interactions

Since 1966, common raven (Corvus corax; raven) abundance has increased throughout much of this species’ Holarctic distribution, fueled by an ever-expanding supply of anthropogenic resource subsidies (e.g., water, food, shelter, and nesting substrate) to ecoregion specific raven population carrying capacities. Consequently, ravens are implicated in declines of both avian and reptilian species of conservation concern, including the California (USA) endangered and federally threatened Mojave desert tortoise (Gopherus agassizii; desert tortoise). While ravens are a natural predator of desert tortoises, the inter-generational stability of desert tortoise populations is expected to be compromised as annual juvenile survival is …

Population Structure Of A Federally Endangered Plant (Astragalus Jaegerianus Munz, Fabaceae) With Limited Range Using Microsatellites, Sueann Neal

Electronic Theses, Projects, and Dissertations

Studies on population genetics examine the relationship and effects of population structure, migration, gene flow and demographic history, and are therefore important in the conservation of endangered species. Astragalus jaegerianus, a critically federally endangered species found in a geographically restricted range is investigated to determine population structure and genetic variation. Previous research on A. jaegerianus focused on DNA sequence data for cpDNA and nrDNA showed no variation. Further research on A. jaegerianus utilizing AFLP’s on the whole genome indicated substantial gene diversity and population structure consistent with geographically widespread species. AFLP research is a cost-effective process to identify levels …

Spatio-Temporal Dynamics Of Fungal Communities And Their Effects On Plants, Kel Cook

Biology ETDs

Fungi perform several critical functions in the environment. Spatiotemporal distributions of fungal communities will mediate when and where these functions happen and how they vary across the landscape. I first explored tropical tree canopy fungal community variation at small spatial scales and documented near total turnover of fungi across sub-meter distances and among adjacent substrates. The second chapter analyzed fungal turnover over the course of three years, where community stability was driven primarily by abundant fungi. In the third chapter, I tested effects of the environment, including host plant and habitat, on canopy fungal communities and found only small effects, …

Coyotes, Rick Tischaefer

Wildlife Damage Management Technical Series

The coyote (Canis latrans; Figure 1) is a medium-sized member of the canid family. Once primarily found in western deserts and grasslands, coyotes have expanded their range across North America and into diverse habitats, including urban areas. This expansion occurred during a time of extensive habitat change and efforts by people to suppress coyote populations to prevent damage. Coyotes can cause a variety of conflicts related to agriculture, natural resources, property, and human health and safety. This document highlights a variety of methods for reducing those conflicts. Coyotes are a highly adaptable species and may become habituated to some management …