Ecology and Evolutionary Biology Commons^™

Connectivity Shapes Functional Diversity And Maintains Complementarity In Surf Zones On Exposed Coasts, Christopher J. Henderson, Ben L. Gilby, Andrew D. Olds, Jesse Mosman, Rod M. Connolly, Glenn Hyndes, Brendan Kelaher, Brooke Maslo, Alan Williams, Thomas A. Schlacher

Research outputs 2022 to 2026

Habitat complexity and connectivity can influence the number of species and their diversity across a landscape. For the surf zones of ocean-exposed beaches, globally one of the longest habitat interfaces, the assumed low structural complexity, and apparent homogeneity, of the sandy seafloor habitats predicts low taxonomic and functional diversity. Here, we assessed how the configuration of the seascape and the context of different beach structure functional diversity and functional niche space of fish assemblages in surf zones. We expected that beaches that were well connected with highly productive and complex estuarine and reef habitats would support a greater level of …

Validation Of Edna Metabarcoding : A Comparison To Traditional Survey Methods In Ozark Streams, Veronica Marian Lee

Masters Theses

Environmental DNA (eDNA) sampling provides a method for assessing fish communities that has potential as a supplement to traditional sampling methods due to its ability to save time as well as its non-invasive nature. This is a method in which from just one sample, eDNA from multiple individual species are able to be sequenced in tandem and the resulting reads identified to describe a community. In order to evaluate this technique and its efficacy for monitoring fish community diversity, we collected water samples alongside surveys performed by the Missouri Department of Conservation sampling program in summers 2020-21. DNA were extracted …

Developmental And Behavioral Responses Of Early Life Stages Of Fathead Minnows (Pimephales Promelas) To Urban Effluents Treated With Advanced-Oxidation Processes, Amy Cavanaugh

Biology Theses

Wastewater Treatment Plants (WWTP) are the main vector for pharmaceutical and personal care products (PPCPs) to enter waterways. Many PPCPs are lipophilic, allowing them to bioaccumulate and biomagnify within aquatic organisms. PPCPs have been known to alter fish behavior and physiological processes, such as nesting defense and sex ratios, and produce an increase in deformities. Advanced oxidation processes (AOPs) are novel ways for treating WWTPs effluents that use hydroxyl radicals to indiscriminately breakdown PPCPs. In this study, fathead minnows (Pimephales promelas) were used to examine the biological effects of AOP-treated municipal effluent as they developed from eggs to …

Otoliths Of South-Western Australian Fish: A Photographic Catalogue, Chris Dowling, Kim Smith, Elaine Lek, Joshua Brown

Fisheries Research Reports

Due to the species-specific nature of otoliths and given they are often the only part of the fish preserved when fish die, otolith catalogues can be used in numerous applications, such as diet studies in fish eating animals, including pinnipeds, fish and sea birds; archaeological purposes such as reconstructing indigenous people’s diets from otoliths found in middens or evolutionary history of fish species by comparing fossilized otoliths. Given the unique mixture of subtropical and temperate fish, including many endemic species that occur off the southwest corner of WA having a catalogue for this area is extremely important for people working …

Fisheries Food Webs: Quantifying Habitat-Use, Trophic Structure, And Energetic Pathways In Coastal Tanzania, Mario Fernando Hernandez

LSU Doctoral Dissertations

Commercial and recreational fisheries are a valuable resource to millions of people around the world. Developing countries are particularly dependent on the revenue provided by locally harvested fish with total exports from these nations valued at $80 billion USD. For Tanzania, fisheries provide not only a source of revenue but an important source of protein with an estimated 25 to 30kg of fish consumed per person every year. There is no doubt that high fisheries production is critical to the well-being of millions of livelihoods along the Tanzanian coast. An important but poorly understood driver of fisheries production is the …

Characterizing The Relationship Between Species Richness And The Seasonal Phenomenon Of Tropical Fish Dispersal In New England Waters, Michael E. O'Neill

Graduate Masters Theses

The Gulf Stream exerts tremendous influence over oceanographic conditions in the Northwest Atlantic as it transports tropical water to higher latitudes. As the Gulf Stream’s path traverses the east coast of North America, there are implications for the biogeography of marine ecosystems within this range and beyond. While the meandering eddies and warm core rings generated by the Gulf Stream persist year-round, the seasonal warming of New England’s coastal waters afford many tropical species transported by the current temporary residence through the summer and fall. Many aspects that shape this phenomenon and its impact on coastal ecosystems remain a mystery. …

Trophic Ecology Of Mesopelagic Fish Larvae And Juveniles In The Northern Gulf Of Mexico, Emily Gipson

Master's Theses

The deep-pelagic environment encompasses ocean waters below 200 m depth, and comprises 90% of the volume of the Gulf of Mexico. Deep-pelagic fishes are important prey for many oceanic consumers, but relatively little is known about their early life history, including larval fish trophic ecology. An understanding of the role deep-pelagic fish larvae have in oceanic food webs is important in the development of ecosystem models that examine the connectivity (via vertical migrations) between the deep-pelagic and epipelagic environments with respect to trophic interactions, nutrient cycling, and carbon sequestration. In this study, archived plankton samples collected during 2010 and 2011 …

Historical Ecology Of The San Diego Sport Fishery: Catch Composition, Species Trends, And Fishing Effort From 1959 To 2011, Rebecca Schwartz Lesberg

Theses

Like ocean systems around the world, species targeted by the San Diego sportfishery are subject to myriad threats from human activity, with several species already showing documented decline. However, long-term fisheries datasets are often lacking, limiting natural resource managers’ ability to appropriately manage these ecologically and economically important species. Therefore, this study used daily reports published in two Southern California newspapers to examine changes in catch composition, effort, and catch per unit effort (CPUE) from 1959-2011 for the San Diego commercial passenger fishing vessel (CPFV) sportfishery. This study then tested the relationship between those patterns and three large scale oceanographic …

Effects Of Wastewater Effluent On Fish Fin Morphology Of Larval Fathead Minnows (Pimephales Promelas) And Swimming Performance Of Smallmouth Buffalo (Ictiobus Bubalus), Seth Michael Bogue

Masters Theses

The Sangamon River flows across central Illinois and is mostly free flowing except in the city of Decatur where it is impounded to form Lake Decatur. The Sanitary District of Decatur (SDD) is located approximately three miles downstream of the Lake Decatur dam. For a significant portion of the year, the stretch of the Sangamon River downstream of SDD is dominated by effluent due to limited discharge from the Lake Decatur dam. This has resulted in heavy nutrient loading, most notably phosphorus, and elevated levels of nickel and other compounds in the downstream section of the river. Smallmouth buffalo ( …

Burbot Post-Spawn Diet, Madison Gibson

Journal of Earth and Life Science

Burbots have become an increasingly popular game fish among anglers and have become a strong predator within the systems, consuming a wide variety of organisms. Therefore, the objective of this study was to compare male and female burbots diets post-spawn in a system. Burbots angled from Bad Medicine Lake were sacrificed and the stomach contents were observed, categorized by the lowest taxonomic key, and then weighed in grams. Percent by weight was calculated for each category of organisms and presented in a pie charts. In all three analyses, crustaceans were the main source of the diet structure at more than …

The Reconstruction Of Hatchery Creek: Effects On Macroinvertebrate And Fish Community Dynamics, Patrick Vrablik

Murray State Theses and Dissertations

Hatchery Creek is a restored stream in Jamestown, KY that drains Wolf Creek National Fish Hatchery. The previous degraded channel of Hatchery Creek caused large sediment plumes in the Lower Cumberland River and was restored to decrease sediment loss and provide the opportunity for a self-sustaining trout population. I predicted that the increased amount of habitat would increase taxa richness, abundance and biomass of macroinvertebrates. Macroinvertebrates were monitored in three periods; the degraded period, a one-year recovery period, and a restored period using surber and kicknet samples in order to determine biomass, abundance, diversity, taxa richness, and macroinvertebrate biotic index. …

Using Principles Of Seascape Ecology To Consider Relationships Between Spatial Patterning And Mobile Marine Vertebrates In A Seagrass-Mangrove Ecotone In Bimini, Bahamas, Sarah Rebecca Taylor Driscoll

Antioch University Dissertations & Theses

Seagrass meadows and mangrove forests are ecologically and economically important systems that are increasingly threatened by anthropogenic activity. This study used a non-invasive method, baited remote underwater video systems (BRUVS), to observe mobile marine vertebrates in the seagrass-mangrove ecotone in North and South Bimini, the only area where mangroves remain in the northwestern Bahamas. An extensive area of mangroves and seagrass was removed for coastal development in North Bimini, where a marine protected area, the North Bimini Marine Reserve (NBMR), has been under consideration for decades. This research applied principles of seascape ecology to assess species abundance, diversity, and richness …

An Examination Of The Influence Of Multi-Scale Processes And Connectivity On The Population And Assemblage Dynamics Of Headwater Fishes, Josh P. Hubbell

Dissertations

Typified by their branching pattern, headwaters are numerically abundant as the density of these habitats increases with increasing distance from the base of a dendritic river system. Connectivity among headwaters is complex, resulting in the spatial isolation of populations. Headwater specialists have evolved a suite of traits that permit these species to permanently reside within these habitats. The spatial configuration and connectivity of headwaters has repercussions for metapopulations and meta-assemblages. I investigated how multi-scale processes and connectivity influenced the patch occupancy, coexistence, movement ecology, population structure, and gene flow of headwater specialists. In chapter two, I used occupancy modeling to …

Per- And Polyfluoroalkyl Substances In Consumable Fish & Surface Waters Near Sites Using Aqueous Film-Forming Foams: Potential Risks, Suggested Regulatory Standards And Policy Approaches For Massachusetts, Tachalla Gibeau

Sustainability and Social Justice

Per- and polyfluoroalkyl substances (PFAS) are emerging contaminants of concern with potential for adverse effects on both human and environmental health. Hence, long-chain PFAS compounds used in legacy aqueous film-forming foams (AFFFs) are being phased out, resulting in the stockpiling of them at various commercial installations. PFAS contaminated runoff from these facilities has the potential to contaminate nearby surface water bodies and the fish inhabiting them. An analytical approach was used to identify surface water bodies in Massachusetts that are habitats for fish susceptible to PFAS contamination and where said fish are also popularly consumed by locals – thereby representing …

Ecological Analyses Of Macroinvertebrates And Fish Species In Six Streams On A Louisiana Military Base From 2001 To 2019, Danielle Joerger

Biology Theses

An in-depth ecological analysis of how and why the aquatic community changes over time was conducted for 6 streams on the Fort Polk military base in Louisiana using data collected from 2001 to 2019. Fort Polk is a unique location as nineteen first-order streams are located on the premises belonging to three separate drainages. The primary goal was to determine whether temporal or between-drainage variation has a larger effect on community structure. To accomplish this the effects of disturbance on fish and macroinvertebrate assemblages was determined temporally and between drainages. Several hypotheses were drawn from this: 1) temporally, assemblages exhibit …

Do Didymosphenia Geminata Blooms Affect Fishes In The Kootenai River Basin?, Niall G. Clancy

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Didymosphenia geminata (Didymo) is a nuisance algae that can cover entire streambeds under certain environmental conditions. Numerous studies have shown that it changes the composition of stream invertebrates. Fishes in many headwaters are known to feed almost exclusively on invertebrates. Thus, there is concern changes to the amount or type of invertebrates caused by Didymo blooms will impact fishes such as trout, charr, and sculpin. In the Kootenai River basin of Montana and British Columbia, we examined stream invertebrates and fish diets, condition, and growth across 25 streams during the summers of 2018 and 2019. The severity of Didymo blooms …

The Utility Of Environmental Dna And Species Distribution Models In Assessing The Habitat Requirements Of Twelve Fish Species In Alaskan North Slope Rivers, James B. Eddings

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Subsistence fishing is a vital component of Alaska’s North Slope borough economy and culture that is being threatened by human disturbance. These threats mean the fish must be protected, but the size of the region makes conservation planning difficult. Fortunately, advances in species distribution models (SDMs), environmental DNA (eDNA), and remote sensing technologies provide potential to better understand species’ needs and guide management. The objectives of my study were to: (1) map the current habitat suitability for twelve fish species, occurring in Alaska’s North Slope, (2) determine if SDMs based on eDNA data performed similarly to, or improved, models based …

Morphological Correlates Of Auditory Sensitivity In The Inner Ear Of Two Species Of Invasive Carp, Tyler Patty

Mahurin Honors College Capstone Experience/Thesis Projects

Silver (Hypopthalmichthys molitrix) and bighead (H. nobilis) carp, are invasive species that have negative impacts upon ecosystems. H. molitrix is known to jump completely out of the water in response to broadband sounds, however, this is not observed in H. nobilis. Preliminary experiments reveal that sounds can be used to modify the behavior of carps. Thus, understanding the hearing abilities of these species is important in order to design appropriate acoustical deterrents. Fish heads were preserved in 4% paraformaldehyde and the inner ears dissected and photographed under a light microscope in order to describe the …

Sampling The Local Fare: Fishes At The Sam Israel House Pit (45gr76), Soap Lake, Washington, Adam Fruge

All Master's Theses

The Sam Israel site is a precontact archaeological complex with numerous fish bones at the north end of Soap Lake, Washington. Excavated in 1976, the fish remains recovered from there were never fully analyzed prior to this research. Since this inland Columbia Plateau site had thousands of fish bones, it contained untapped potential for our understanding of ancient local fish procurement. As such, I conducted a detailed analysis of 2,862 fish bone specimens from the Sam Israel House Pit locus to: study a larger sample of fish bones in greater detail than was done before; compare the distribution of fishes …

Springs Of The Arabian Peninsula: Historical Trends, Current Status And Human Impact In Saudi Arabia, Oman And Jordan, Kamal M. Aljohani

USF Tampa Graduate Theses and Dissertations

This research was conducted to update previous studies of the springs of the Arabian Peninsula (Saudi Arabia, Oman and Jordan). Approach: 76 springs were surveyed in between March and July 2018: 15 Saudi Arabia, 41 Oman and 20 Jordan to ascertain the current status, water quality and zooplankton benthos and fish communities. Investigation of the changes of biota and chemical parameters downstream from the springs source in Saudi Arabia. Results: Mercury exceeded the WHO and USEPA maximum contaminant level (MCL) in 63 of 76 springs, Aluminum exceeded MCL in 8 of 76 springs, and both were the common dissolved heavy …

The Evolution Of Reproductive Complexity In Fishes, Frieda Benun

Dissertations, Theses, and Capstone Projects

How does reproductive complexity evolve? In this dissertation, I investigate the evolution of parental investment and mating behavior, using both macro- and microevolutionary lenses. I use fishes, the most diverse group of vertebrates, comprising over 30,000 species, as a model to study the evolution of these traits.

In Chapter 1, I introduce the evolution of parental behaviors in fishes. I present a systematic review of parental care for 294 families (close to 60%) of bony fish and show that male-only care is the predominant form of care in this group. I summarize current theories on parental care, emphasizing external fertilization, …

Assessing Populations Of Eastern Brook Trout (Salvelinus Fontinalis) Above And Below Waterfalls In Mountain Streams Of Virginia, Hannah Eisemann Macmillan

Masters Theses, 2010-2019

Anthropogenically driven factors, such as increasing temperature and sediment in valley streams, acidification of mountain streams, and the introduction of non-native trout, are restricting habitat suitable for healthy populations of eastern brook trout (Salvelinus fontinalis) throughout their native Appalachian range. Brook trout are important as predators of insects in mountain streams and as a favorite of anglers. It is crucial that remaining populations in sustainable habitats be identified and preserved. Waterfalls are geologic knickpoints preventing base-level lowering that create unique, stable landscapes above them, which may alleviate the temperature-productivity/acidity “habitat squeeze” for populations of brook trout and could …

The Physico-Chemical Environment And Aquatic Biodiversity Of Head Marala Wetland During 2000-2001, Zahid Bhatti, Muhammad Asif Gondal, Andleeb Batool

Journal of Bioresource Management

An ecological study on Head Marala Wetland was undertaken. The study will help in providing sound basis for the future conservation activities and its management, on sounder footing. The Marala wetlands in Bajwat area included river Jammu Tawi, river Chanab and river Manawar Tawi were studied for a period of one year, i.e. from October, 2000 to September, 2001. In this study, 36 Phytoplanktons belonging to six families were observed. The other aquatic fauna observed included 14 species of fish, 2 turtles, one leech, one prawn, one shrimp and one bullfrog. The results showed that physico-chemical parameters had an impact …

Effects Of Rainbow Trout On Brook Trout Population Size In Tributaries To Lake Superior In Cook County, Minnesota, Craig Tangren

Journal of Earth and Life Science

This study looked at the effects of Rainbow Trout stocking on the size of Brook Trout populations above migratory barriers. Linear mixed effects models were used to determine if there was a relationship between Brook Trout and Rainbow Trout catch rates. Age 1 or older Brook Trout populations were influenced by relative abundance of age 1 or older Rainbow Trout, according to the best supported model based on AIC scores. Population responses varied by stream, ranging along a gradient from high catch rates with a positive relationship to a negative relationship with low relative abundances. Streams with a positive relationship …

Distribution And Habitat Use Of Benthic Fishes In The Lower Kanawha River, West Virginia, Nathaniel V. Owens

Graduate Theses, Dissertations, and Problem Reports (ETD)

The Kanawha River in West Virginia is a historically diverse system in terms of ichthyofauna although, like many other large rivers, it has been subjected to a suite of anthropomorphic perturbations. These include this system being modified to allow the passage of commercial vessels for industry thus altering flow regimes, increased sedimentation, water depth, and channelization, and decreased interactions with its floodplain. Additionally, the fishes of this system have suffered from deleterious historical water quality issues caused by intensive timber operations, mining, and industrial waste. Post Clean Air Act, Clean Water Act, and Surface Mining Control and Reclamation Act water …

Spatial Structuring And Life History Connectivity Of Antarctic Silverfish Along The Southern Continental Shelf Of The Weddell Sea, Jilda Alicia Caccavo, Julian R. Ashford, Svenja Ryan, Chiara Papetti, Michael Schröder, Lorenzo Zane

OES Faculty Publications

A multi-disciplinary approach was employed to examine a physical-biological population hypothesis for a critical forage species, the Antarctic silverfish Pleuragramma antarctica. Caccavo et al. (2018; Sci Rep 8:17856) had shown strong gene flow along the westward Antarctic Slope Current, in addition to spatially recurring length modes that provided evidence for episodic connectivity. In this paper, otolith nucleus chemistry from a subset of fish collected in the southern Weddell Sea as part of a hydrographic survey of the Filchner Trough system was used to test between connectivity scenarios. Nucleus chemistry, which reflects environmental exposure during early life, showed significant …

Novel Information On The Morphology, Phylogeny And Distribution Of Camallanid Mematodes From Marine And Freshwater Hosts In South Africa, Including The Description Of Camallanus Sodwanaensis N. Sp., Roman Svitin, Marliese Truter, Olena Kudlai, Nico J. Smit, Louis Du Preez

Harold W. Manter Laboratory of Parasitology: Library Materials

Four species of previously known nematodes from the family Camallanidae were found from different hosts in South Africa: Batrachocamallanus xenopodis from the frog Xenopus muelleri, Paracamallanus cyathopharynx, and Procamallanus pseudolaeviconchus from the catfish Clarias gariepinus and Spirocamallanus daleneae from the catfish Synodontis zambezensis. In the material collected from various marine fishes, several specimens of nematodes from the genus Camallanus clearly differed from all previously known species. Based on morphological differences these specimens are assigned to a new species, C. sodwanaensis. Molecular data of 18S and 28S rDNA and COI sequences are provided for the collected species …

An Evaluation Of Bull Trout Movement Dynamics In The Walla Walla River, Courtney Newlon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bull trout are a fish species listed as threatened under the Endangered Species Act. Historically, they ranged from Northern California at the southernmost extent, into Canada at the northern most extent, and east into Nevada and Montana. Bull trout are highly migratory and require large, unfragmented habitats to persist and are thus highly susceptible to human induced land-use practices. The goal of my thesis was to obtain a better understanding of bull trout movement patterns in the Walla Walla River, Washington using complimentary techniques; Passive Integrated Transponder (PIT) technology and otolith microchemistry. PIT tags can be injected into a fish …

The Macroinvertebrate And Fish Communities Of In-Stream Beaver Ponds In Northeastern Utah, Susan Washko

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Beavers were virtually extirpated from North America during the fur trade, but populations have since recovered. Dams built by recolonizing beaver alter stream habitat by forming deep, slow ponds within the streams. Such changes to the habitat is likely to have consequences for organisms such as macroinvertebrates and fish. The objective of this study was to identify the differences in the macroinvertebrate and trout community in beaver ponds and lotic (e.g. flowing reaches of a stream) reaches in tributaries to the Logan River in northeastern Utah. The macroinvertebrate community of beaver ponds had fewer species, fewer numbers, and lower biomass …

Long-Term Trends Of Stream Fish Community Assemblages In Southern Missouri With Contemporary Land Use Impacts, Stephanie Marie Sickler

Graduate Theses/Dissertations

Stream fish communities in the Ozarks are structured via a number of different mechanisms, including basin, stream size, and human land use. The purpose of this study was to understand the structuring mechanisms of stream fish communities in southern Missouri. I compiled 48 years of historical fish collections performed by the Ichthyology class at Missouri State University consisting of 140 sites. I resampled 45 of these sites in summer of 2016. First, I tested whether communities are different between basins and stream size. Next, I tested associations of land use at three spatial scales to local fish communities. Last, I …