Ecology and Evolutionary Biology Commons^™

Fundamental Theorems Of Evolution, David C. Queller

Biology Faculty Research

Evolutionary biology is undergirded by an extensive and impressive set of mathematical models. Yet only one result, Fisher’s theorem about selection and fitness, is generally accorded the status of a fundamental theorem. I argue that although its fundamental status is justified by its simplicity and scope, there are additional results that seem similarly fundamental. I suggest that the most fundamental theorem of evolution is the Price equation, both because of its simplicity and broad scope and because it can be used to derive four other familiar results that are similarly fundamental: Fisher’s average-excess equation, Robertson’s secondary theorem of natural selection, …

A Model Of The Use Of Evolutionary Trees (Muet) To Inform K-14 Biology Education, Yi Kong, Ankita Thawani, Trevor R. Anderson, Nancy Pelaez

PIBERG Publications

Evolutionary trees are powerful tools used in modern biological research, and also commonly used in textbooks and classroom instruction. Studies have shown that K-14 students have difficulties interpreting evolutionary trees. To improve student learning about this topic, it is essential to teach them how to understand and use trees like professional biologists. Unfortunately, few currently used teaching frameworks for evolution instruction are designed for this purpose. In this study we developed the Model of the Use of Evolutionary Trees (MUET), a conceptual model that characterizes how evolutionary trees were used by professional biologists as represented in their research publications. The …

Climate Dynamics, Invader Fitness, And Ecosystem Resistance In An Invasion-Factor Framework, Stephen L. Young, David R. Clements, Antonio Ditommaso

West Central Research and Extension Center, North Platte

As researchers and land managers increasingly seek to understand plant invasions and the external (climate) and internal (plant genetics) conditions that govern the process, new insight is helping to answer the elusive question of what makes some invasions successful and others not. Plant invasion success or failure is based on a combination of evolutionary and ecological processes. Abiotic (e.g., climate) and biotic (e.g., plant competition) conditions in the environment and plant genetics (e.g., fitness) combine in either decreasing or increasing invasion, yet it has proven challenging to know exactly which of these conditions leads to success for a given species, …

Cognitive Continuity In Cognitive Dissonance, David R. Brodbeck, Madeleine I. R. Brodbeck

Animal Sentience

Zentall’s (2016) model of cognitive dissonance is compatible with cognitive continuity between humans and nonhumans. It may help explain cognitive dissonance-like behavior in many species, including humans. It is also consistent with Tinbergen’s (1963) ‘four whys’ in ethological explanation.

Primate Proteomic Composition Of Seminal Plasma And Prostate-Specific Transglutaminase Activity In Relation To Sexual Selection., Amanda M.C. Zielen

Electronic Theses and Dissertations

Humans (Homo sapiens), chimpanzees (Pan troglodytes), and gorillas (Gorilla gorilla) have diverse mating systems with varying levels of sperm competition. Several seminal plasma genes have been claimed to evolve under positive selection, while others are altered or lost. This study aims to identify biologically relevant differences among seminal plasma proteomes of primates in relation to mating systems and previous genomic studies. Seminal plasma from three individuals of each species were run in triplicate in shotgun liquid chromatography – tandem mass spectrometry (LC-MS/MS) and confirmed with Western blots. Over 7,000 peptides were identified across all …

Evolution's Error: How Human Nature Went Awry, Richard Grigg

Philosophy, Theology and Religious Studies Faculty Publications

The article offers the author's insights related to biological evolution and humanism. Topics include the failure and error of evolution to provide human with resources for life satisfaction, a scenario which presents humanism and evolution wherein a promotion competition between two employees was featured, and the study by neurologist Sigmund Freud about the human brain.

Darwinian Evolutionary Theory And Constructions Of Race In Nazi Germany: A Literary And Cultural Analysis Of Darwin’S Works And Nazi Rhetoric, Emily M. Wollmuth

Departmental Honors Projects

First published in 1856, Charles Darwin’s Origin of Species is one of the most impactful scientific writings in history. While the influence of Darwinian evolutionary theory on historical events has been widely studied, no single work of scholarship has previously combined close reading of Origin’s representations of “race” with analysis of how those constructions of “racial” difference are (mis)translated across the cultural discourses of the eugenics movement and Nazi Germany. Through comparative cultural studies and close literary analysis of Hitler’s Mein Kampf and Darwin’s works—including Origin, Descent of Man, and Voyage of the Beagle, this paper examines how evolutionary …

Perspectives Provided By Leopard And Other Cat Genomes: How Diet Determined The Evolutionary History Of Carnivores, Omnivores, And Herbivores, Soonok Kim, Yun Sung Cho, Jong Bhak, Stephen J. O'Brien, Joo-Hong Yeo

Biology Faculty Articles

Recent advances in genome sequencing technologies have enabled humans to generate and investigate the genomes of wild species. This includes the big cat family, such as tigers, lions, and leopards. Adding the first high quality leopard genome, we have performed an in-depth comparative analysis to identify the genomic signatures in the evolution of felid to become the top predators on land. Our study focused on how the carnivore genomes, as compared to the omnivore or herbivore genomes, shared evolutionary adaptations in genes associated with nutrient metabolism, muscle strength, agility, and other traits responsible for hunting and meat digestion. We found …

Crassulacean Acid Metabolism As A Continuous Trait: Variability In The Contribution Of Crassulacean Acid Metabolism (Cam) In Populations Of Portulacaria Afra, Lonnie J. Guralnick, Kate Gladsky

Arts & Sciences Faculty Publications

Portulacaria afra L. is a dominant facultative CAM species growing in the Southeastern Cape of South Africa. P. afra is well adapted to regions of the Spekboom thicket in areas of limited and sporadic rainfall. P. afra populations occur in isolated drainages. We hypothesized the utilization of CAM would vary in the different populations in response to rainfall and temperature gradients. Carbon isotope composition can be used to determine the contribution of CAM in leaf tissue. P. afra leaves of populations were analyzed in transects running south to north and east to west in locations from the coast to elevations …

Evolutionary Linkage Of Mimetic And Non-Mimetic Color Traits In A Coral Snake Mimicry Complex, John D. Curlis Jr

College of Graduate Studies: Theses & Dissertations

Color polymorphism in aposematic mimicry systems is a perplexing phenomenon for evolutionary biologists, as theoretically the benefits of converging on a model phenotype should constrain the evolution of phenotypic diversity in these systems (i.e., color polymorphism should not occur). Nevertheless, color polymorphism in mimicry systems is prevalent throughout many taxa. In some of these systems, the evolution of color polymorphism results in the existence of non-mimetic morphs, such as those that are cryptic. The case of ground snakes (Sonora semiannulata) is unique in that color polymorphism encompasses both mimetic and cryptic morphs, as well as individual mimetic and …

The Development And Expression Of Canine Emotion, Allison L. Martin

Animal Sentience

In her review of canine emotions, Kujala (2017) discusses how humans often attribute emotions such as fear, love, and jealousy to their canine companions. This attribution is often dismissed as anthropomorphism, suggesting that only humans can possess these emotions. I argue that emotions are not something we possess but features of certain behavioral patterns. Both human and canine emotions arise through evolution and conditioning; examining their development and expression may lead to new insights about both canine and human behavior.

Consciousness Is Not Inherent In But Emergent From Life, Jon Mallatt, Todd E. Feinberg

Animal Sentience

Reber’s theory of the cellular basis of consciousness (CBC) is right to emphasize that we should study consciousness (sentience) in its simplest form, taking its evolution into account. However, not enough evidence is presented to support CBC’s unorthodox claim that even simple, one-celled organisms are conscious. As pointed out by other commentators, the CBC seems to be based on outdated ideas about evolution and does not acknowledge that consciousness could be an evolutionary novel feature. Such emergent features are abundant in living organisms. We review our own emergentist solution, in which consciousness evolved in the elaborating nervous systems of the …

The Emotional Brain Of Fish, Sonia Rey Planellas

Animal Sentience

Woodruff (2017) analyzes structural homologies and functional equivalences between the brains of mammals and fish to understand where sentience and social cognition might reside in teleosts. He compares neuroanatomical, neurophysiological and behavioural correlates. I discuss current advances in the study of fish cognitive abilities and emotions, and advocate an evolutionary approach to the underlying basis of sentience in teleosts.

Evolution In The Deep Sea: Scales And Mechanisms Of Population Divergence, Amanda E. Glazier

Graduate Doctoral Dissertations

The deep sea is the Earth’s largest ecosystem and harbors a unique and largely endemic fauna. Although most research has focused on the ecological mechanisms that allow coexistence, recent studies have begun to investigate how this remarkable fauna evolved.. My work quantifies geographic patterns of genetic variation and investigates potential mechanisms that shape evolution in the deep ocean.

Bathymetric genetic divergence is common in the deep sea with population structure typically decreasing with depth. The evolutionary mechanisms that underlie these patterns are poorly understood. Geographic patterns of genetic variation indicated that the protobranch bivalve Neilonella salicensis was composed of two …

Evolutionary Dynamics Of Tree Invasions: Complementing The Unified Framework For Biological Invasions, Rafael D. Zenni, Ian A. Dickie, Michael J. Wingfield, Heidi Hirsch, Casparus J. Crous, Laura A. Meyerson, Treena I. Burgess, Thalita G. Zimmermann, Metha M. Klock, Evan Siemann, Alexandra Erfmeier, Roxana Aragon, Lia Montti, Johannes J. Le Roux

Faculty Publications, Environmental Studies

Evolutionary processes greatly impact the outcomes of biological invasions. An extensive body of research suggests that invasive populations often undergo phenotypic and ecological divergence from their native sources. Evolution also operates at different and distinct stages during the invasion process. Thus, it is important to incorporate evolutionary change into frameworks of biological invasions because it allows us to conceptualize how these processes may facilitate or hinder invasion success. Here, we review such processes, with an emphasis on tree invasions, and place them in the context of the unified framework for biological invasions. The processes and mechanisms described are pre-introduction evolutionary …

Variation In Female Mating Behavior And Success In The Damselfly, Calopteryx Maculata, Suzanne E. Allison

Masters Theses, 2010-2019

Traditionally, the study of sexual selection has focused on the evolution of elaborate male traits and how they enhance the ability to out-compete other males directly (access to females) and indirectly (access to desirable territories or resources). Female trait studies have focused most on evolved preferences for male traits. While we know much about how sexual selection acts on males, there is a deficit of equivalent study on females. In insects, including damselflies, male size and pigmentation are positively correlated with fat reserves and immune abilities, and therefore with male competitive ability. Here, we show that phenotypic variation that has …

The Plasticity Of Functional Traits In The Dipterocarps Of Borneo, Ju Ping Chan

School of Biological Sciences: Dissertations, Theses, and Student Research

Plasticity plays an important role in the adaptation of sessile organisms like plants to the environment. Plants have been shown to respond plastically in heterogeneous environments, with plants originating from more resource-diverse environments thought to display greater plasticity. There is also evidence that fast-growing species show greater plasticity, as acquisition of resources from resource flushes is greatly aided by faster adaptations. We tested these theories in a Bornean tropical rain forest among three soil specialization groups (clay specialists, sandy loam specialists, and generalists) using two treatments of soil (clay versus sandy loam) and two treatments of light (high versus low). …

Fishes As A Template For Reticulate Evolution: A Case Study Involving Catostomus In The Colorado River Basin Of Western North America, Max Russell Bangs

Graduate Theses and Dissertations

Hybridization is neither simplistic nor phylogenetically constrained, and post hoc introgression can have profound evolutionary effects. Most studies have focused on tractable model systems, rather than organisms with complicated phylogenetic histories. Finescale Sucker (genus Catostomus) in western North America is recognized as a paradigm of fish hybridization. Yet, its extent of historic and contemporary introgression is largely unstudied, an aspect that impedes the resolution of its phylogeny as a baseline for conservation. To explore reticulation in this group, I assayed variation of 20 Catostomus species across temporal and geographic scales by analyzing hundreds of samples and employing a combination of …

How Could Consciousness Emerge From Adaptive Functioning?, Max Velmans

Animal Sentience

The sudden appearance of consciousness that Reber posits in creatures with flexible cell walls and motility rather than non-flexible cells walls and no motility involves an evolutionary discontinuity. This kind of “miracle” is required by all “discontinuity” theories of consciousness. To avoid miraculous emergence, one may need to consider continuity theories, which accept that different forms of consciousness and material functioning co-evolve but assume the existence of consciousness to be primal in the way that matter and energy are assumed to be primal in physics.

“Cellular Basis Of Consciousness”: Not Just Radical But Wrong, Brian Key

Animal Sentience

Reber (2016) attempts to resuscitate an obscure and outdated hypothesis referred to as the “cellular basis of consciousness” that was originally formulated by the author nearly twenty years ago. This hypothesis proposes that any organism with flexible cell walls, a sensitivity to its surrounds, and the capacity for locomotion will possess the biological foundations of mind and consciousness. Reber seeks to reduce consciousness to a fundamental property inherent to individual cells rather than to centralised nervous systems. This commentary shows how this hypothesis is based on supposition, false premises and a misunderstanding of evolutionary theory. The cellular basis of consciousness …

Beginnings: Physics, Sentience And Luca, Carolyn A. Ristau

Animal Sentience

According to Reber’s model, Cellular Basis of Consciousness (CBC), sentience had its origins in a unicellular organism and is an inherent property of living, mobile organic forms. He argues by analogy to basic physical forces which he considers to be inherent properties of matter; I suggest that they are instead the stuff of scientific investigation in physics. I find no convincing argument that sentience had to begin in endogenously mobile cells, a criterial attribute of the originator cell(s)for sentience according to CBC. Non-endogenously mobile cells, (i.e., plants or precursors) in a moving environment would suffice. Despite my concerns and the …

Phylogenetic Relationships And Evolution Of Snakes, Alex Figueroa

LSU New Orleans Theses and Dissertations

Snakes represent an impressive evolutionary radiation of over 3,500 widely-distributed species, categorized into 515 genera, encompassing a diverse range of morphologies and ecologies. This diversity is likely attributable to their distinctive morphology, which has allowed them to populate a wide range of habitat types within most major ecosystems. In my first chapter, I provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61). I then …

Life In The Underworld: Anchialine Cave Biology In The Era Of Speleogenomics, Jorge L. Pérez-Moreno, Thomas M. Iliffe, Heather D. Bracken-Grissom

International Journal of Speleology

Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing …

Nocturnal Foraging Enhanced By Enlarged Secondary Eyes In A Net-Casting Spider, Jay A. Stafstrom, Eileen A. Hebets

Eileen Hebets Publications

Animals that possess extreme sensory structures are predicted to have a related extreme behavioral function. This study focuses on one such extreme sensory structure—the posterior median eyes of the net-casting spider Deinopis spinosa. Although past research has implicated the importance of vision in the nocturnal foraging habits of Deinopis, no direct link between vision in the enlarged eyes and nocturnal foraging has yet been made. To directly test the hypothesis that the enlarged posterior median eyes facilitate visually based nocturnal prey capture, we conducted repeated-measures, visual occlusion trials in both natural and laboratory settings. Our results indicate that D. …

Assessing The Impact Of Historical Story Telling On Student Learning Of Natural Selection, Janice Marie Fulford

Dissertations

Research suggests that because of its historical nature, the learning of evolutionary biology is problematic compared to that of other science disciplines. While explanations used in historical sciences often employ historical narratives, which are distinct from narratives in other contexts, such as stories, the two types of narratives have structural similarities that suggest the potential role of stories based in the history of science for the teaching of evolutionary biology. Stephen Klassen, a prominent science educator, has studied how stories from the history of physics can promote the learning of and attitudes towards science. Klassen’s pioneering work identifies structural components …

Slavery, Welfare And The Sixth Extinction, Stephen R. Clark

Animal Sentience

Ng’s laudable concern for animal welfare would be welcome to any sensible slave-owner wishing to preserve his investment. What welfarism – for slave-owners and animal husbandmen – fails to call into question is whether we have the right to breed, hold captive and kill animals at all: If it matters, as the widely recognized slogan of ‘Five Freedoms’ suggests, that animals have the chance to live a ‘normal’ life, then more matters than keeping them ‘happy’ in subjection. Their lives – and also the lives of wild things – also deserve respect.

Investigating Physiological Collaborations Between A Lower Termite And Its Symbionts, Brittany F. Peterson

Open Access Dissertations

This project was completed in an effort to better understand the contributions of symbiotic microbes to the biology of Reticulitermes flavipes, the eastern subterranean termite. Lower-termites, like R. flavipes, house symbionts from all three domains of life within their hindgut paunch. This intimate association is reflected in nearly every aspect of termite biology. Here, I investigate these physiological collaborations as they relate to digestion and immunity. My efforts focused on 1) quantifying the role of bacteria in wood digestion within the termite gut, 2) evaluating the role of symbionts in protection against pathogens, and 3) identifying gene products that bacterial …

A Systems Approach To Animal Communication, Eileen A. Hebets, Andrew B. Barron, Christopher N. Balakrishnan, Mark E. Hauber, Paul H. Mason, Kim L. Hoke

Eileen Hebets Publications

Why animal communication displays are so complex and how they have evolved are active foci of research with a long and rich history. Progress towards an evolutionary analysis of signal complexity, however, has been constrained by a lack of hypotheses to explain similarities and/or differences in signalling systems across taxa. To address this, we advocate incorporating a systems approach into studies of animal communication—an approach that includes comprehensive experimental designs and data collection in combination with the implementation of systems concepts and tools. A systems approach evaluates overall display architecture, including how components interact to alter function, and how function …

Beyond The Adaptationist Legacy: Updating Our Teaching To Include A Diversity Of Evolutionary Mechanisms, Rebecca M. Price, Kathryn E. Perez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A paradigm shift away from viewing evolution primarily in terms of adaptation - the "adaptationist programme" of Gould and Lewontin - began in evolutionary research more than 35 years ago, but that shift has yet to occur within evolutionary education research or within teaching standards. We review three instruments that can help education researchers and educators undertake this paradigm shift. The instruments assess how biology undergraduates understand three evolutionary processes other than natural selection: genetic drift, dominance relationships among allelic pairs, and evolutionary developmental biology (evo-devo). Testing with these instruments reveals that students often explain a diversity of evolutionary mechanisms …

Benefits Of Size Dimorphism And Copulatory Silk Wrapping In The Sexually Cannibalistic Nursery Web Spider, Pisaurina Mira, Alissa G. Anderson, Eileen Hebets

Eileen Hebets Publications

In sexually cannibalistic animals, male fitness is influenced not only by successful mate acquisition and egg fertilization, but also by avoiding being eaten. In the cannibalistic nursery web spider, Pisaurina mira, the legs of mature males are longer in relation to their body size than those of females, and males use these legs to aid in wrapping a female’s legs with silk prior to and during copulation. We hypothesized that elongated male legs and silk wrapping provide benefits to males, in part through a reduced likelihood of sexual cannibalism. To test this, we paired females of random size with …