Ecology and Evolutionary Biology Commons^™

Are Rabid Raccoons (Procyon Lotor) Ready For The Rapture? Determining The Geographic Origin Of Rabies Virus-Infected Raccoons Using Radcapture And Microhaplotypes, Matthew W. Hopken, Antoinette J. Piaggio, Zaid Abdo, Richard B. Chipman, Clara P. Mankowski, Kathleen M. Nelson, Mikaela Samsel Hilton, Christine Thurber, Mirian T. N. Tsuchiya, Jesús E. Maldonado, Amy T. Gilbert

United States Department of Agriculture Wildlife Services: Staff Publications

North America is recognized for the exceptional richness of rabies virus (RV) wildlife reservoir species. Management of RV is accomplished through vaccination targeting mesocarnivore reservoir populations, such as the raccoon (Procyon lotor) in eastern North America. Raccoons are a common generalist species, and populations may reach high densities in developed areas, which can result in contact with humans and pets with potential exposures to the raccoon variant of RV throughout the eastern United States. Understanding the spatial movement of RV by raccoon populations is important for monitoring and refining strategies supporting the landscape-level control and local elimination of …

Discerning Friend From Foe: Systematic Revision Of Cuscuta L. Section Indecorae Using A Combined Ecological, Morphometric, And Phylogenetic Approach., Corey Burt

Theses and Dissertations (Comprehensive)

The genus Cuscuta (Dodder; Convolvulaceae) are obligate parasitic plants. In one clade known as section Indecorae, there are species which are considered pests that pose significant threats to agricultural crop production, while other species are rare or known only from historical records. Section Indecorae contains three species: C. coryli, C. warneri, and C. indecora (the latter with three infraspecific taxa: var. indecora, var. longisepala, and var. attenuata). The systematics of section Indecorae are not currently resolved. Cuscuta indecora has a long and complicated taxonomic history with many infraspecific varieties described, and …

Investigating The Effects Of Disturbance And Competition On Establishment, Growth, And Reproduction Of The Endangered Ripariosida Hermaphrodita, Daniel Engelking

Theses and Dissertations (Comprehensive)

Ripariosida hermaphrodita (Virginia Mallow) is a perennial riparian plant with broad, maple-like leaves. It grows up to three meters high and is often found in large clonal patches, but sexually reproduces readily. While this plant may seem like a redoubtable competitor when growing in large colonies, it is declining across its range in North America. The only known occurrences in Canada are in southern Ontario. Prior to this study, no new populations had been recorded even though one of the known populations produces copious amounts of viable seed with potential to disperse. There are many hypotheses for its rarity, but …

Differences In Drifting Invertebrate Communities Across Arctic Ecozones And The Influence On Potential Growth Of Grayling (Thymallus Arcticus), Charles Chanyi

Theses and Dissertations (Comprehensive)

Invertebrate drift is a key process that potentially affects multiple levels of food web organization within stream environments. However, our understanding of the mechanistic drivers of drift in high latitude streams and subsequent bottom-up control that drift may have on fish predators in these environments remains understudied. This project aimed to gain the baseline knowledge of how drift functions across two major high latitude ecozones, the boreal forest and tundra, and how those possible differences in drifting community characteristics may impact drift-feeding Arctic grayling (Thymallus arcticus). These objectives were accomplished by characterizing stream environments across both ecozones, sampling …

Natural Variation In Temperature-Modulated Immunity To Pseudomonas Syringae Pv. Tomato (Pst Dc3000) In Arabidopsis Thaliana Plants, Christina A. M. Rossi

Theses and Dissertations (Comprehensive)

Studies conducted on the model plant-pathogen system Arabidopsis thaliana-Pseudomonas syringae pv. tomato (Pst) showed that elevated temperature suppresses the pathogen-induced production of salicylic acid (SA), which is a key plant defence hormone. This increased host vulnerability at higher temperatures is due to downregulated expression of CALMODULIN BINDING PROTEIN 60-LIKE G (CBP60g) and SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1), which encode master regulators of SA production. Collectively, these previous studies only focused on one natural accession of Arabidopsis called Columbia-0 (Col-0). However, the intraspecific variation in Arabidopsis immunity phenotypes under elevated temperature remains unknown. To fill this critical knowledge gap, my …

A Multi-Isotope Approach Reveals Seasonal Variation In The Reliance On Marine Resources, Production Of Metabolic Water, And Ingestion Of Seawater By Two Species Of Coastal Passerine To Maintain Water Balance, Lucas Navarrete, Nico Lübcker, Felipe Alvarez, Roberto Nespolo, Juan Carlos Sanchez-Hernandez, Karin Maldonado, Zachary D. Sharp, John P. Whiteman, Seth D. Newsome, Pablo Sabat

Biological Sciences Faculty Publications

Tracing how free-ranging organisms interact with their environment to maintain water balance is a difficult topic to study for logistical and methodological reasons. We use a novel combination of triple-oxygen stable isotope analyses of water extracted from plasma (δ¹⁶O, δ¹⁷O, δ¹⁸O) and bulk tissue carbon (δ¹³C) and nitrogen (δ¹⁵N) isotopes of feathers and blood to estimate the proportional contribution of marine resources, seawater, and metabolic water used by two species of unique songbirds (genus Cinclodes) to maintain their water balance in a seasonal coastal environment. We …

Strong, Recent Selective Sweeps Reshape Genetic Diversity In Freshwater Bivalve Megalonaias Nervosa, Rebekah L. Rogers, Stephanie L. Grizzard, Jeffrey T. Garner

Biological Sciences Faculty Publications

Freshwater Unionid bivalves have recently faced ecological upheaval through pollution, barriers to dispersal, harvesting, and changes in fish–host prevalence. Currently, over 70% of species in North America are threatened, endangered or extinct. To characterize the genetic response to recent selective pressures, we collected population genetic data for one successful bivalve species, Megalonaias nervosa. We identify megabase-sized regions that are nearly monomorphic across the population, signals of strong, recent selection reshaping diversity across 73 Mb total. These signatures of selection are greater than is commonly seen in population genetic models. We observe 102 duplicate genes with high dN/d …

Estimating The Distribution Of Oryzomys Palustris, A Potential Key Host In Expanding Rickettsial Tick-Borne Disease Risk, Catherine A. Lippi, Samuel Canfield, Christina Espada, Holly D. Gaff, Sadie J. Ryan

Biological Sciences Faculty Publications

Increasingly, geographic approaches to assessing the risk of tick-borne diseases are being used to inform public health decision-making and surveillance efforts. The distributions of key tick species of medical importance are often modeled as a function of environmental factors, using niche modeling approaches to capture habitat suitability. However, this is often disconnected from the potential distribution of key host species, which may play an important role in the actual transmission cycle and risk potential in expanding tick-borne disease risk. Using species distribution modeling, we explore the potential geographic range of Oryzomys palustris, the marsh rice rat, which has been …

The Practice And Promise Of Temporal Genomics For Measuring Evolutionary Responses To Global Change, René D. Clark, Katrina A. Catalano, Kyra S. Fitz, Eric Garcia, Kyle E. Jaynes, Brendan N. Reid, Allyson Sawkins, Anthony A. Snead, John C. Whalen, Malin L. Pinsky

Biological Sciences Faculty Publications

Understanding the evolutionary consequences of anthropogenic change is imperative for estimating long-term species resilience. While contemporary genomic data can provide us with important insights into recent demographic histories, investigating past change using present genomic data alone has limitations. In comparison, temporal genomics studies, defined herein as those that incorporate time series genomic data, utilize museum collections and repeated field sampling to directly examine evolutionary change. As temporal genomics is applied to more systems, species and questions, best practices can be helpful guides to make the most efficient use of limited resources. Here, we conduct a systematic literature review to synthesize …

Floral And Genetic Divergence Across Environmental Gradients Is Moderated By Inter-Population Gene Flow In Platanthera Dilatata (Orchidaceae), Lisa E. Wallace, Marlin L. Bowles

Biological Sciences Faculty Publications

Understanding how natural selection acts on intraspecific variation to bring about phenotypic divergence is critical to understanding processes of evolutionary diversification. The orchid family is well known for pollinator-mediated selection of floral phenotypes operating among species and along environmental or geographic gradients. Its effectiveness at small spatial scales is less understood, making the geographic scale at which intraspecific floral variation is examined important to evaluating causes of phenotypic divergence. In this study, we quantified phenotypic variation in the orchid Platanthera dilatata across 26 populations in coastal Southeast Alaska and compared this to edaphic and genetic variation at microsatellite loci. We …

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Biological Sciences Faculty Publications

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40–75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ¹³C and δ¹⁵N) of host and symbiont tissues …

Rapidly Changing Range Limits In A Warming World: Critical Data Limitations And Knowledge Gaps For Advancing Understanding Of Mangrove Range Dynamics In The Southeastern Usa, Rémi Bardou, Michael J. Osland, Steven Scyphers, Christine Shepard, Karen E. Aerni, Jahson B. Alemu I, Robert Crimian, Richard H. Day, Nicholas M. Enwright, Laura C. Feher, Sarah L. Gibbs, Kiera O'Donnell, Savannah H. Swinea, Kalaina Thorne, Sarit Truskey, Anna R. Armitage, Ronald Baker, Josh L. Breithaupt, Kyle C. Cavanaugh, Erik S. Yando, A. Randall Hughes, Et Al.

Biological Sciences Faculty Publications

Climate change is altering species’ range limits and transforming ecosystems. For example, warming temperatures are leading to the range expansion of tropical, cold-sensitive species at the expense of their cold-tolerant counterparts. In some temperate and subtropical coastal wetlands, warming winters are enabling mangrove forest encroachment into salt marsh, which is a major regime shift that has significant ecological and societal ramifications. Here, we synthesized existing data and expert knowledge to assess the distribution of mangroves near rapidly changing range limits in the southeastern USA. We used expert elicitation to identify data limitations and highlight knowledge gaps for advancing understanding of …

The Coral Bleaching Automated Stress System (Cbass): A Low-Cost, Portable System For Standardized Empirical Assessments Of Coral Thermal Limits, Nicholas R. Evensen, Katherine E. Parker, Thomas A. Oliver, Stephen R. Palumbi, Cheryl A. Logan, James S. Ryan, Courtney N. Klepac, Gabriela Perna, Mark E. Warner, Christian R. Voolstra, Daniel J. Barshis

Biological Sciences Faculty Publications

Ocean warming is increasingly affecting marine ecosystems across the globe. Reef-building corals are particularly affected by warming, with mass bleaching events increasing in frequency and leading to widespread coral mortality. Yet, some corals can resist or recover from bleaching better than others. Such variability in thermal resilience could be critical to reef persistence; however, the scientific community lacks standardized diagnostic approaches to rapidly and comparatively assess coral thermal vulnerability prior to bleaching events. We present the Coral Bleaching Automated Stress System (CBASS) as a low-cost, open-source, field-portable experimental system for rapid empirical assessment of coral thermal thresholds using standardized temperature …

Use Of Amino Acid Isotope Analysis To Investigate Capital Versus Income Breeding Strategies In Migratory Avian Species, Nico Lübcker, John P. Whiteman, Oliver N. Shipley, Keith A. Hobson, Seth D. Newsome

Biological Sciences Faculty Publications

1. Income and capital breeding represent opposing ends of a continuum of reproductive strategies. Quantifying nutrient allocation to reproduction is challenging, but recent advances in compound-specific stable isotope analysis hold promise for tracing the source of individual compounds allocated to reproduction.

2. Here, we describe a novel approach of using measured carbon (δ13C) and nitrogen (δ15N) isotope values of individual amino acids (AAs) in pectoral muscle of egg-laying females and egg yolk as a useful tool to quantify the reliance on income versus capital breeding in migrating species. We used white-fronted (Anser albifrons frontalis), lesser snow (A. …

Editorial: New Frontiers In The Application Of Stable Isotopes To Ecological And Ecophysiological Research, Keith A. Hobson, John P. Whiteman, Seth D. Newsome

Biological Sciences Faculty Publications

No abstract provided.

Fine-Scale Genetic Structure In Rhizosphere Microbial Communities Associated With Chamaecrista Fasciculata (Fabaceae), Mahboubeh Hosseinalizadeh Nobarinezhad, Lisa E. Wallace

Biological Sciences Faculty Publications

Soil microbiota of the rhizosphere are an important extension of the plant phenotype because they impact the health and fitness of host plants. The composition of these communities is expected to differ among host plants due to influence by host genotype. Given that many plant populations exhibit fine-scale genetic structure (SGS), associated microbial communities may also exhibit SGS. In this study, we tested this hypothesis using Chamaecrista fasciculata, a legume species that has previously been determined to have significant SGS. We collected genetic data from prokaryotic and fungal rhizosphere communities in association with 70 plants in an area of …

Attack Of The Clones: Elucidating The Role Of Clonality In The Invasion Success Of Carpobrotus Edulis, Eduardo Luis Cruz

Electronic Theses, Projects, and Dissertations

Transcriptomics is a modern technique in genomics that utilizes RNA sequences to get a snapshot of genetic expression. This is a powerful tool in non-model species lacking a reference genome. Thus, the application of comparative transcriptomics has the potential to help us elucidate the evolutionary mechanisms that facilitate species invasion. Carpobrotus edulis is a prolific and widespread invasive succulent plant belonging to the Aizoaceae family. A native to South Africa, this species has become a dominant invader of many Mediterranean coastal areas. In this study, we leveraged the use of RNAseq to investigate evolutionary changes among invasive populations. RNA-seq data …

The Effect Of Environmental Factors On Movement Patterns And Habitat Use Of Young-Of-The-Year Scalloped Hammerhead Sharks (Sphyrna Lewini) In The Tolomato River Nursery, Matthew Bernanke

UNF Graduate Theses and Dissertations

Various shark populations on the southeastern coast of the United States experienced declines in the late 20^th century, including the scalloped hammerhead shark (Sphyrna lewini). Improved management strategies, implemented in the late 1990s, have helped these populations to recover, but they are still under threat from fishing pressure and habitat loss. In continuing to strive towards population recovery and conservation, it is important to identify Essential Fish Habitat, or habitats that are necessary for the spawning, feeding, breeding, or growth of marine organisms. One such habitat is that of the shark nursery habitat. Nursery habitats are those …

Investigation Of The Segment Polarity Network In The Tardigrade Hypsibius Exemplaris, Taylor R. Harrison

UNF Graduate Theses and Dissertations

Segmentation has facilitated the evolution of the many forms of the panarthropods. Downstream regulation of segmentation is controlled by the highly conserved segment polarity network which includes the genes engrailed (en), hedgehog (hh), wingless (wg), cubitus interruptus (ci), patched (ptc), and smoothend (smo). While a high level of conservation has been seen in both the arthropods and onychophorans, only en has been described in any representatives of Tardigrada. Previous work had already established the loss of wg, which encodes for a Wnt ligand, in the tardigrade H. exemplaris …

Microbial Communities In The Guana Tolomato Matanzas National Estuarine Research Reserve: An Assessment Of The Responses Of Spartina Alterniflora Epiphytes To Nitrogen Enrichment, And A Characterization Of Benthic Cyanobacterial Diversity, Anne C. Hurley

UNF Graduate Theses and Dissertations

Elevated nitrogen and phosphorus inputs from anthropogenic sources, which can lead to significant increases in algal biomass and changes in algal community composition, poses a serious threat to estuarine ecosystems worldwide. While numerous studies have addressed the impacts of nutrient enrichment on epiphytic algae in seagrass habitats, few have investigated potential nutrient-driven changes to epiphytes on emergent salt marsh plants, such as Spartina alterniflora. Epiphytic microalgae on S. alterniflora play an important role in food availability in salt marsh ecosystems, and epiphytic nitrogen-fixing cyanobacteria also provide an important source of nitrogen for salt marsh consumers. The first study included …

The Lord Howe Island Rodent Eradication: Social And Technical Lessons For Inhabited Islands, Grant A. Harper, Simon Pahor, Kelly Harrington, Darcelle Matassoni, Darryl Birch

Human–Wildlife Interactions

The 2019 rodent eradication on 1,455-ha Lord Howe Island, Australia, was the second and largest attempted on a permanently inhabited island. With 445 residents, it presented numerous novel challenges, resulting in an operation best summarized in 4 words: compromise, commensal, complexity, and cost. A ground-based operation was conducted across the inhabited portion of the island, some 300 ha known as the “settlement,” with aerial bait applied on forested hill country and cliffs (1,200 ha). Initial community resistance and the presence of mice (Mus musculus) meant that almost 19,000 external bait stations were established within the settlement, on a …

An Introduction To The Special Issue: Island Invaders, Aaron B. Shiels, Shane R. Siers, S. Nicole Frey

Human–Wildlife Interactions

This is the introductory letter from the associate editors of the special issue on Island Invaders.

Table Of Contents

Human–Wildlife Interactions

This is the table of contents.

An Automatic System To Evaluate Bait Station Visitation By Brown Treesnakes And Mongooses, Robert T. Sugihara, William C. Pitt, Are R. Berentsen, Francis L. Benevides Jr.

Human–Wildlife Interactions

Understanding the temporal, spatial, and behavioral patterns of the free-ranging target species in response to candidate baits and baiting strategies is important to ensure control success. This information can also assist in the development and deployment of feeding stations and can exclude non-target species while constituting effective bait delivery and control strategies for certain invasive animals, especially at environmentally sensitive sites. We used passive integrated transponder (PIT) tags in conjunction with very-high frequency radio-telemetry to remotely record bait station visitations and evaluate bait attractiveness in separate field research studies of brown treesnakes (Boiga irregularis) on Andersen Air Force …

Rat Biosecurity Surveillance And Response Following Eradication On A Tropical Atoll, David Ringler, Richard Griffiths, Frank Murphy, Baudouin Des Monstiers, James C. Russell

Human–Wildlife Interactions

Biosecurity is a key element following any eradication operation, employing tools that allow both the identification and elimination of survivors or the early detection of new invaders. Eradication managers must ensure the surveillance strategy is correctly adapted to the spatial context and that the potential causes of a pest’s presence are understood to optimize their operational plans. We used the case of the eradication of black (Rattus rattus) and Pacific rats (Rattus exulans) from Honuea and Onetahi islets (Tetiaroa Atoll, French Polynesia) in 2020 to test an approach that combines rapid eradication assessment modelling and genetic …

A Look To The Future: New And Innovative Invasive Wildlife Management And Eradication Technologies, Aaron B. Shiels, Katherine E. Horak

Human–Wildlife Interactions

Certain wildlife tools and discoveries have been true “game changers” for invasive species management and eradications on islands. This article provides an overview of 3 cutting-edge technologies that are being eagerly pursued, but are not yet operational, for invasive wildlife management to build efficiency, reduce environmental impacts, and/or improve animal welfare practices.

Hwi Monograph Series

Human–Wildlife Interactions

The HWI Monograph Series includes open access publications on wild pigs, black bears, deer, and free-ranging domestic cats.

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Merging Lanes, S. Nicole Frey

Human–Wildlife Interactions

This is the letter from the editor-in-chief of Volume 17, Issue 3.

Hwi Monograph Series

Human–Wildlife Interactions

The HWI Monograph Series includes open access publications on wild pigs, black bears, deer, and free-ranging domestic cats.