Ecology and Evolutionary Biology Commons^™

Long‑Term Adaptation To Galactose As A Sole Carbon Source Selects For Mutations Outside The Canonical Gal Pathway, Artemiza A. Martínez, Andrew Conboy, Sean Buskirk, Daniel A. Marad, Gregory I. Lang

Biology Faculty Publications

Galactose is a secondary fermentable sugar that requires specific regulatory and structural genes for its assimilation, which are under catabolite repression by glucose. When glucose is absent, the catabolic repression is attenuated, and the structural GAL genes are fully activated. In Saccharomyces cerevisiae, the GAL pathway is under selection in environments where galactose is present. However, it is unclear the adaptive strategies in response to long-term propagation in galactose as a sole carbon source in laboratory evolution experiments. Here, we performed a 4,000-generation evolution experiment using 48 diploid Saccharomyces cerevisiae populations to study adaptation in galactose. We show that fitness …

Refining The Moose Serum Progesterone Threshold To Diagnose Pregnancy, Madeline Struck, William J. Severud, Yvette M. Chenaux-Ibrahim, Edmund J. Isaac, Janine L. Brown, Seth A. Moore, Tiffany M. Wolf

Natural Resource Management Faculty Publications

Pregnancy determination is necessary for sound wildlife management and understanding population dynamics. Pregnancy rates are sensitive to environmental and physiological factors and may indicate the overall trajectory of a population. Pregnancy can be assessed through direct methods (rectal palpation, sonography) or indicated using hormonal assays (serum progesterone or pregnancy-specific protein B, fecal progestogen metabolites). A commonly used threshold of 2 ng/ml of progesterone in serum has been used by moose biologists to indicate pregnancy but has not been rigorously investigated. To refine this threshold, we examined the relationship between progesterone concentrations in serum samples and pregnancy in 87 moose ( …

Trophically Integrated Ecometric Models As Tools For Demonstrating Spatial And Temporal Functional Changes In Mammal Communities, Rachel A. Short, Jenny L. Mcguire, P. David Polly, A. Michelle Lawing

Natural Resource Management Faculty Publications

We are in a modern biodiversity crisis that will restructure community compositions and ecological functions globally. Large mammals, important contributors to ecosystem function, have been affected directly by purposeful extermination and indirectly by climate and land-use changes, yet functional turnover is rarely assessed on a global scale using metrics based on functional traits. Using ecometrics, the study of functional trait distributions and functional turnover, we examine the relationship between vegetation cover and locomotor traits for artiodactyl and carnivoran communities. We show that the ability to detect a functional relationship is strengthened when locomotor traits of both primary consumers (artiodactyls, n …

American Eel (Anguilla Rostrata) And Other Fishes As Surveyed By Environmental Dna In The Bronx River And Hudson River Watershed, Sam C. Chin

Dissertations, Theses, and Capstone Projects

Mounting an effective response to the threats faced by freshwater fish may require expansions to aquatic biomonitoring in excess of what is feasible using the capture-based survey techniques currently relied upon by natural resource managers. Methods for analyzing environmental DNA (eDNA) are emerging as a minimally invasive and cost-effective approach for surveying fish and other organisms. By detecting taxon-specific DNA sequences recovered from environmental samples (e.g. water, sediment), eDNA methods are able to infer species presence from samples that can be collected rapidly with simple equipment. In many cases, eDNA detection rates of fish species have been shown to meet …

An Evaluation Of Avian Influenza Virus Whole-Genome Sequencing Approaches Using Nanopore Technology, Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti

United States Department of Agriculture Wildlife Services: Staff Publications

As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid sequencing to aid in appropriate response and mitigation activities. To facilitate this objective, we investigate a next-generation sequencing platform that uses a portable nanopore sequencing device to generate and present data in real time. This platform offers the potential to extend in-house sequencing …

What Drives Larval Condition For Northern Anchovy (Engraulis Mordax)? Implications For Coastal Pelagic Species Recruitment Fluctuations And Fishery Management Practices, Michelle Robidas

Theses

Discerning the causes of population boom and bust cycles for coastal pelagic species (CPS) has been a major focus of fisheries management research for over a century. Year-class strength is contingent on larval survival and condition, which can be influenced by larval size at age and growth rate. These two factors, in turn, can be affected by maternal investment and environmental variables such as water temperature, salinity, oxygen, and chlorophyll a. We evaluated each of these factors from 127 two to eight week-old Northern Anchovy (Engraulis mordax) larvae off the coast of San Diego to San Francisco, …

Plastivore: Identification And Functional Characterization Of Plastic Degrading Lipase And Carboxylesterase Enzyme Families From Galleria Mellonella, Joseph Boctor

Theses and Dissertations

[provided as attachment while patent is pending]

Non-Aggressive Competition Between Males Of Srilankametrus Yaleensis (Kovařík Et Al., 2019) (Scorpionidae), And Other Types Of Agonistic Behavior Observed In Scorpions, Victoria Tang

Euscorpius

A peculiar intraspecific agonistic behavior involving a non-aggressive physical combat is reported between the adult males of Srilankametrus yaleensis (Kovařík et al., 2019) (Scorpionidae: Heterometrinae). The adult males were observed to resort to a ritualized and relatively gentle way for strength demonstration. The combat is characterized by lateral spreading of pedipalps, chelicerae-to-chelicerae collision, and entanglement of metasomal segments. This behavior is hereby considered a form of an intrasexual combat defined as the “arm-span competition”. It is hypothesized to be beneficial for solving territorial and/ or sexual competitions while avoiding unnecessary mortality which could pose adverse impact to the natural populations. …

A Statistical Analysis Of The Change In Age Distribution Of Spawning Hatchery Salmon, Rachel Macaulay, Emily Barrett, Grace Penunuri, Eli E. Goldwyn

Spora: A Journal of Biomathematics

Declines in salmon sizes have been reported primarily as a result of younger maturation rates. This change in age distribution poses serious threats to salmon-dependent peoples and ecological systems. We perform a statistical analysis to examine the change in age structure of spawning Alaskan chum salmon Oncorhynchus keta and Chinook salmon O. tshawytscha using 30 years of hatchery data. To highlight the impacts of this change, we investigate the average number of fry/smolt that each age of spawning chum/Chinook salmon produce. Our findings demonstrate an increase in younger hatchery salmon populations returning to spawn, and fewer amounts of fry produced …

Landscape And Site Factors Drive Invasive Phragmites Management And Native Plant Recovery Across Chesapeake Bay Wetlands, Christine B. Rohal, Eric L. G. Hazelton, Eliza K. Mcfarland, Rebekah Downard, Melissa K. Mccormick, Dennis F. Whigham, Karin M. Kettenring

Watershed Sciences Student Research

Successful invasive plant management—where invaders are sufficiently reduced and diverse native plant communities recover—remains an elusive goal for land managers. The site- and landscape-scale drivers of variable management outcomes and vegetation recovery are poorly understood due to a lack of rigorous experiments that characterize longer term vegetation trends across contexts. We present the results of a five-year experiment across eight subestuaries of Chesapeake Bay, representing a gradient of watersheds with differing dominant land-use types and anthropogenic impacts, to evaluate invasive and native plant response to herbicide management. The focal invader, Phragmites australis (common reed), is one of the most aggressive …

Controls Of Physical Drivers On The Formation And Toxicity Of Harmful Cyanobacteria Blooms (Cyanohabs), Courtney N. Hammond

LSU Master's Theses

Estuaries within the Gulf of Mexico are exhibiting profound alterations due to climatic changes and the implementation of coastal restoration activities. These changes are attributed to the increasing frequency of harmful cyanobacteria blooms (cyanoHABs) within Lake Pontchartrain, an estuary located in southeastern Louisiana, USA. There is a better understanding into how the opening of the Bonnet Carré Spillway (BCS) impacts cyanoHAB formations compared to the effect of other physical drivers when the spillway doesn’t dominate the system. The goal of this study is to provide a greater understanding of the baseline conditions when the BCS is closed and determine what …

National Development And The Sustainability Of Mining In The Atacama Desert, Chile, Dakota Soleil Osgood

Capstone Collection

As climate change continues to intensify on a global scale, efforts have been made to implement renewable energies and progressive technologies. These tools are critical in the shift towards a more sustainable practice, and yet analysis of localized impacts from the development of these mechanisms is inadequate. Chile has been and continues to be a leading country in mineral extraction, with an economic history founded in the mining industry. The establishment of mining in Chile as a progressive tool has aided the social and economic development of the nation. Consequences of mining extraction, however, include intensive environmental degradation, human rights …

Artificial Intelligence For Automated Detection Of Large Mammals Creates Path To Upscale Drone Surveys, Javier Lenzi, Andrew Barnas, Abdelrahman A. Elsaid, Travis Desell, Robert F. Rockwell, Susan N. Ellis-Felege

Biology Faculty Publications

Imagery from drones is becoming common in wildlife research and management, but processing data efficiently remains a challenge. We developed a methodology for training a convolutional neural network model on large-scale mosaic imagery to detect and count caribou (Rangifer tarandus), compare model performance with an experienced observer and a group of naïve observers, and discuss the use of aerial imagery and automated methods for large mammal surveys. Combining images taken at 75 m and 120 m above ground level, a faster region-based convolutional neural network (Faster-RCNN) model was trained in using annotated imagery with the labels: “adult …

Revisiting Plant Defense-Fitness Trade-Off Hypotheses Using Solanum As A Model Genus, Sakshi Watts, Satinderpal Kaur, Rupesh R. Kariyat

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Plants possess physical and chemical defenses which have been found to deter herbivores that feed and oviposit on them. Despite having wide variety of defenses which can be constitutive or induced, plants are attacked and damaged by insects associated with different mouthparts and feeding habits. Since these defenses are costly, trade-offs for growth and defense traits play an important role in warding off the herbivores, with consequences for plant and herbivore growth, development and fitness. Solanum is a diverse and rich genus comprising of over 1,500 species with economic and ecological importance. Although a large number of studies on Solanum …

The Future Of Pandemics: Land Use Controls As Means Of Preventing Zoonotic Disease, Bailey Andree

Pace International Law Review

Zoonotic diseases are increasing in frequency as climate change worsens around the world, with the recent COVID-19 pandemic highlighting the inadequate mechanisms in place to counteract disease spread. This article reviews various zoonotic diseases and their patterns of spread, highlighting land use change as the key driver of disease to demonstrate the need for legal intervention. International land use law is a little-developed subsect of environmental law that holds the key to combating this disease spread, and this article proposes solutions through this legal lens. Land use techniques which may be used to combat disease spread include conservation laws, setback …

Lychas Jakli Sp. N. (Scorpiones: Buthidae) From Indonesia, František Kovařík

Euscorpius

A new species Lychas jakli sp. n. (Scorpiones: Buthidae) is described from Indonesia, fully illustrated with color photos showing its morphology and habitus. A new synonymy is proposed: Lychas kotao Lourenço, 2020 = Lychas mucronatus (Fabricius, 1798), syn. n.

Thirteen New Species Of Butterflies (Lepidoptera: Hesperiidae) From Texas, Jing Zhang, Qian Cong, Nick V. Grishin

Insecta Mundi

Analyses of whole genomic shotgun datasets, COI barcodes, morphology, and historical literature suggest that the following 13 butterfly species from the family Hesperiidae (Lepidoptera: Papilionoidea) in Texas, USA are distinct from their closest named relatives and therefore are described as new (type localities are given in parenthesis): Spicauda atelis Grishin, new species (Hidalgo Co., Mission), Urbanus (Urbanus) rickardi Grishin, new species (Hidalgo Co., nr. Madero), Urbanus (Urbanus) oplerorum Grishin, new spe­cies (Hidalgo Co., Mission/Madero), Telegonus tsongae Grishin, new species (Starr Co., Roma), Autochton caballo Grishin, new species (Hidalgo Co., 6 mi W of Hidalgo), Epargyreus fractigutta …

New Host And Distribution Records Plus Additional Notes For North American Species Of Chrysobothris Eschscholtz (Coleoptera: Buprestidae), With Designation Of A Lectotype For Chrysobothris Vulcanica Leconte, 1861, Richard L. Westcott

Insecta Mundi

New distribution and host records plus additional notes are provided for North American spe­cies in the genus Chrysobothris Eschscholtz (Coleoptera: Buprestidae). Forty-one species are treated. The occurrence of Chrysobothris bicolor Horn in the USA is refuted. Chrysobothris breviloboides Barr is newly synonymized with Chrysobothris breviloba Fall. The southernmost record for Chrysobothris piuta Wick­ham, from Baja California, Mexico, is established. A specimen of the Argentinian Chrysobothris rugosa Gory and Laporte labeled from Florida is reported. A lectotype for Chrysobothris vulcanica LeConte is newly designated.

Taxonomic Notes On The Luciolinae (Coleoptera: Lampyridae), Oliver Keller, Lesley Ballantyne

Insecta Mundi

Several nomenclatural changes for taxa in the firefly subfamily Luciolinae (Coleoptera: Lampyri­dae) are proposed. Evidence is presented to correct the year of description for Luciola dregei Motschulsky 1853 to Motschulsky 1854 when the name was ratified. We correct the authorities and years of descriptions for type species designations for the genera Delopleurus Motschulsky, 1853, and Delopyrus Motschulsky, 1853 to Motschulsky 1854 for both. All remaining taxa described as variations in the subfamily Luciolinae by McDermott (1966), are evaluated to subspecies with their availability determined based on ICZN (1999) Article 45.6.

A New Species Of Biclonuncaria Razowski And Becker, 1993 (Lepidoptera: Tortricidae: Polyorthini) From Costa Rica, John W. Brown

Insecta Mundi

Biclonuncaria recurvana, new species (Lepidoptera: Tortricidae: Polyorthini), is described and il­lustrated from Area de Conservación Guanacaste in northwestern Costa Rica. It is most similar to B. conica Razowski, 1993, from Mexico, but the two are easily distinguished by features of the male genitalia. Biclo­nuncaria recurvana has been reared (n = 12 specimens) from field-collected larvae feeding on the leaves of Dalbergia glomerata Hemsley (Fabaceae), consistent with the previously reported host plant for B. dalbergiae Razowski and Becker, 1993, which has been reared from Dalbergia in Brazil.

New Species And Taxonomical And Geographical Notes On Cerambycidae And Disteniidae (Coleoptera: Chrysomeloidea), Daniel Heffern, Juan Pablo Botero, Antonio Santos-Silva

Insecta Mundi

Four new species of Coleoptera are described: Pentanodes clavatus new species, from Ecuador; Pentanodes baldwini new species, from Panama (Cerambycidae: Cerambycinae: Tillomorphini); Elytrimita­trix (Grossifemora) dilatata new species, from Mexico (Disteniidae) and Novantinoe falsa new species, from Mexico (Disteniidae). Taxonomical notes on Euderces cribellatus (Bates, 1885) (Tillomorphini) and Oreodera Audinet-Serville, 1835 (Lamiinae: Acrocinini) are provided. Additionally, new records are provided for Oreo­dera noguerai McCarty, 2001 (new state record), Adetus croton Heffern, Santos-Silva and Botero, 2019 (new country record), Icimauna sarauaia Martins and Galileo, 1991 (new country record), and Phoebe mexicana Bates, 1881 (new state record).

Assessment Of Carbon Productivity Dynamics In Aspen Stands Under Climate Change Based On Forest Inventories In Central Siberia, Andrey Andreevich Vais, Valentina Valerievna Popova, Alina Andreevna Andronova, Viktor Nikolaevich Nemich, Artem Gennadievich Nepovinnykh, Pavel Vladimirovich Mikhaylov

Aspen Bibliography

The aim of the present research was to study the dynamics of growth and conditions of aspen stands under climate change, according to different periods of forest inventory. The study was conducted in modal aspen forests growing in the subtaiga/forest steppe region of Central Siberia. Aspen forests grow intensively at young age, which allows them to realize maximum carbon sequestration potential. The research was based on forest inventory data from 1972, 1982, 2002, and 2021 (the study was conducted on a limited territory). There was a steady increase in temperatures in the growing season from 1982 to 2002. The amount …

Ecological Complexity And Avoiding Pest Resurgence: Intuitions From Mathematical Ecology, Theresa Ong, John H. Vandermeer

Dartmouth Scholarship

Pest resurgence is defined by a predictable increase in pests following declines resulting from the implementation of pest management practices. This phenomenon is notorious; familiar in biblical references to cyclical plagues of locust and discussions of pesticide treadmills, where pests resurge following the evolution of pesticide resistance. Targeted “silver-bullet” approaches, whether chemical, mechanical, biological, or genetic in nature, apply a reductionist lens toward the removal of a specific target pest, often ignoring ecological context, by application of said silver-bullet. In this review article, we cover how past and recent developments in theoretical ecology and complex systems dynamics provide a general …

Fire Impacts And Dynamics Of Seasonally Dry Tropical Forest Of East Java, Indonesia, Sutomo, Eddie J. B. Van Etten

Research outputs 2022 to 2026

Background: Seasonally dry tropical forests (SDTFs) are globally important ecosystems which receive less research attention compared to tropical rainforests but are equally under serious threat. The objectives of this paper are to characterize the vegetation structure, diversity and composition of SDTF of Baluran National Park, East Java, Indonesia, and to assess the impact of burning this SDTF and its post-fire recovery. Methods: In the field, we measured floristic composition and dominance at sites with different fire histories in both SDTF and adjacent savannas of Baluran. Remote sensing image analysis was also employed using the MODIS burn area product and various …

A Dynamical System Model Of Dengue Transmission For Rio De Janeiro, Brazil, Gregory Schmidt, Benjamin Whipple, Vinodh Chellamuthu, Xiaoxia Xie

Spora: A Journal of Biomathematics

The dengue virus is a serious concern in many parts of the world, including Brazil. As data indicates, a prominent vector for dengue is the mosquito Aedes aegypti. By using the dengue incidence records from the Brazilian SINAN database, we estimate the population of A. aegypti within the city of Rio de Janeiro. Using historical climate data for Rio de Janeiro and the computed population estimates, we extend an existing model for the population dynamics of mosquitoes to incorporate precipitation in aquatic stages of development for A. aegypti.

Subgenera Of Dacne Latreille, 1797 (Erotylidae: Erotylinae: Dacnini) Given Full Generic Rank, Paul E. Skelley

Insecta Mundi

Previously described subgenera of Dacne Latreille, 1797 (Coleoptera: Erotylidae) show charac­ter states and combinations implying closer relationships with genera other than with Dacne, suggesting “Dacne” is not monophyletic. These characters are briefly discussed along with the genera sharing the charac­ters. To improve the current classification, the subgenera of Dacne are raised to generic status as: Afrodacne Delkeskamp, 1954, Ameridacne Skelley, 2009, and Xenodacne Boyle, 1956. A checklist of all species included in these genera is presented, updating generic combinations as needed.

Still A Private Universe? Community College Students’ Understanding Of Evolution, Meredith A. Dorner, Philip Sadler, Brian Alters

Education Faculty Articles and Research

Background

Measuring what students know and retain about evolution is essential to improving our understanding of how students learn evolution. The literature shows that college students appear to have a poor understanding of evolution, answering questions on various instruments correctly only about half of the time. There is little research regarding evolution understanding among community college students and so this study examines if those students who are enrolled in life science classes, who are assessed using questions based on grade eight standards, show a better understanding of evolutionary principles than younger students and if there are differences in knowledge based …

A Comparison Of Microsatellites And Single Nucleotide Polymorphisms For The Assessment Of Population Structure In The Amblyomma Maculatum Koch, 1844 Species Complex, Henrey A. Deese

Electronic Theses and Dissertations

The Gulf Coast tick, Amblyomma maculatum Koch, 1844 is widespread throughout North and Central America and is the primary vector for the emerging pathogen Rickettsia parkeri. In the U.S., the population in the Southwest (A. maculatum morphotype III) is morphologically different from the population east of the Rocky Mountains (A. maculatum morphotype II). This research tests the hypothesis that A. maculatum morphotype II and morphotype III represent distinct species through the analysis and comparison of 6 microsatellite loci and suite of 135,221 Single nucleotide polymorphisms (SNPs) generated from ddRADseq. Population genetic analysis of both microsatellites and SNPs …

Assessing The Unionid Assemblage Of The Robert C. Byrd Pool, Ohio River, Ethan Hunter Bellamy

Theses, Dissertations and Capstones

Unionid mussels are the most imperiled taxa in the United States and are vastly understudied. The entire Robert C. Byrd (RCB) pool of the Ohio River is the study area. I selected sites from the 2019 and 2013 ORSANCO RCB pool assessments that utilize random site selection across the pool. I used SCUBA to survey and collect data on unionid diversity, reproduction, and habitat. I collected 1,083 individuals over 19 species in RCB pool. I compared results from RCB pool survey to two similar surveys conducted in Greenup Pool. Both richness and abundance in the Upper Section of Greenup Pool …

Characterizing The Vegetation And Effects Of Climate Change On Parris Island, A Sea Island Ecosystem, Cody Hart Goodson

Theses, Dissertations and Capstones

Coastal habitats provide many ecosystem services, protecting coastlines from storm surges and erosion, diminishing the effects of eutrophication, sequestering large amounts of carbon, and acting as vital wildlife habitat. Sea-level rise and increased storm surge intensity associated with climate change are increasingly disrupting coastal habitats. These disturbances can shift environmental gradients that drive the zonation of coastal vegetation types, driving habitat conversion. Monitoring coastal habitat conversion can improve our understanding of the dynamic effects of climate change on these landscapes. Therefore, our objectives for chapter 1 were to identify and describe the distributions of vegetation types present on Marine Corps …