Ecology and Evolutionary Biology Commons^™

Do Mesopelagic Fish Biomass Patterns Change In Response To Major Oceanographic Features In The Northern Gulf Of Mexico?, Ian M. Areford

All HCAS Student Capstones, Theses, and Dissertations

In recent years interest in mesopelagic fishes has grown due to their ecological significance and economic potential. A major outstanding question is how the assemblage is potentially structured by mesoscale (10 - 100s km) oceanographic features such as eddies, fronts, and riverine plumes. Mesoscale features are known to influence micronekton and zooplankton’s spatial distributions but data on individual mesopelagic fish species’ responses are limited. The Gulf of Mexico (GoM) is an area of particular interest due to its diverse mesopelagic fish assemblage, its well-defined mesoscale oceanographic features, its history of anthropogenic impacts such as oil spills, and its diverse mesopelagic …

Aksakidion Odontokeras (Coleoptera: Chrysomelidae: Eumolpinae: Eumolpini), A New Genus And Species In An Old Collection From Paraguay, Wills Flowers

Insecta Mundi

Aksakidion odontokeras, new genus and new species (Coleoptera: Chrysomelidae: Eumolpinae: Eumolpini), is described from four specimens in the Bowditch Collection at Harvard University. It is dis­tinguished from all other genera in the Eumolpinae by an elongate, seta-bearing, tusk-like projection on the dorsal side of each mandible. Although locality data only mention Paraguay as the country of origin, information about the collector indicates it was collected in the late 19th century in the vicinity of Asunción.

During a recent visit to the Museum of Comparative Zoology at Harvard University (MCZ) to study type mate­rial of Neotropical Chrysomelidae, a short series …

Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman

USDA Wildlife Services: Staff Publications

The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2–8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of …

Rapid Evolution Of A(H5n1) Influenza Viruses After Intercontinental Spread To North America, Ahmed Kandeil, Christopher Patton, Jeremy C. Jones, Trushar Jeevan, Walter N. Harrington, Sanja Trifkovic, Jon P. Seiler, Thomas Fabrizio, Karlie Woodard, Jasmine C. Turner, Jeri Carol Crumpton, Lance Miller, Adam Rubrum, Jennifer Debeauchamp, Charles J. Russell, Elena A. Govorkova, Peter Vogel, Mia Kim-Torchetti, Yohannes Berhane, David Stallknecht, Rebecca Poulson, Lisa Kercher, Richard J. Webby

USDA Wildlife Services: Staff Publications

Highly pathogenic avian influenza A(H5N1) viruses of clade 2.3.4.4b underwent an explosive geographic expansion in 2021 among wild birds and domestic poultry across Asia, Europe, and Africa. By the end of 2021, 2.3.4.4b viruses were detected in North America, signifying further intercontinental spread. Here we show that the western movement of clade 2.3.4.4b was quickly followed by reassortment with viruses circulating in wild birds in North America, resulting in the acquisition of different combinations of ribonucleoprotein genes. These reassortant A(H5N1) viruses are genotypically and phenotypically diverse, with many causing severe disease with dramatic neurologic involvement in mammals. The proclivity of …

The Floral Thermal Environment: Physical, Morphological, And Environmental Determinants, And Their Impact On Plant-Pollinator Interactions, Jennifer Apland

All Theses

Anthropogenic climate change is driving major shifts in global temperatures and increases in extreme temperature events that contribute to reduced survival and species loss. To counteract extreme temperatures, many organisms can undergo geographic range shifts or engage in behavioral thermoregulation (e.g., movement to suitable microhabitats). While plants are sessile and thus subject to highly variable ambient temperatures, they have evolved mechanisms to regulate internal floral temperature. Floral thermoregulation may mitigate thermal stress on pollen and ovules and impact plant-pollinator interactions. These mechanisms for thermoregulation are often highly dependent on ambient temperature and solar radiation as most plants are not endothermic. …

Protective Responses Of The Intestinal Epithelial Cell Line Ht-29 Cells Exposed To Dephosphorylated Salmonella Flagellin [Research Note], Heyeon Baik, Jaiesoon Cho

The Philippine Agricultural Scientist

This study aimed to describe the effects of Salmonella Typhimurium flagellin (SFL) dephosphorylated by sweet potato purple acid phosphatase (PAP) on the protective responses of the intestinal epithelial cell line HT-29 cells. The enzyme was reported to display a broad substrate specificity for various organic phosphorylated conjugates and phosphoproteins. Dephosphorylation of SFL by sweet potato PAP decreased to 35% in the presence of 0.05 mM vanadate as compared with the negative control (p < 0.05). Intact SFL and the SFL treated with sweet potato PAP did not remarkably induce the activation of caspase-3 in HT-29 cells at all the tested levels of the substrate. Intact SFL maximally induced the release of IL (interleukin)-8 in HT-29 cells at 1000 ng/mL (p < 0.05). However, the SFL treated with the enzyme inhibited the release of IL-8 at over 100 ng/mL of the substrate as compared with intact SFL, resulting in an approximately 8-fold decrease even at 1000 ng/mL (p < 0.05). The SFL treated with the enzyme decreased the activation of the total ERK1/2 in the cells to 1.9 and 1.7–fold at 10 and 1000 ng/mL of the substrate, respectively, as compared with intact SFL (p < 0.05). In conclusion, sweet potato PAP could be a promising tool for controlling excessive inflammation during Salmonella infection in animal husbandry, and the enzyme could be a safe alternative that can overcome the drawbacks of chemotherapy.

Patterns In Winter Stonefly Distribution Along A River Continuum And Land-Use Gradient In Northwest Arkansas Streams, Zachary Tipton

Graduate Theses and Dissertations

Freshwater ecosystems are facing a crisis with extinction rates of aquatic species exceeding those of their terrestrial counterparts by up to fivefold. This decline is predominantly attributed to evolving land use patterns within watersheds, leading to chemical and physical transformations in freshwater habitats. Northwest Arkansas (NWA) represents one of the fastest-growing regions in the United States, undergoing substantial shifts in land use. Consequently, the status of aquatic life in this region remains uncertain. Addressing this concern, the latest Arkansas Wildlife Action Plan emphasizes the necessity of distribution and population data to guide conservation efforts for Species of Greatest Conservation Need …

Balsam Woolly Adelgid And Host Forest Characteristics: Impacts And Interactions In Recently Invaded Areas Of Northern Utah And Southeastern Idaho, Grayson B. Jordan

All Graduate Theses and Dissertations, Fall 2023 to Present

The balsam woolly adelgid (BWA), is an invasive forest insect native to central and southern Europe. In 2017, it was detected in Utah for the first time. While BWA had limited impact as a pest in its native European range, it has caused considerable damage to true fir populations in North America. In the Intermountain region, subalpine fir has been identified as the tree species most at risk of BWA infestation. Subalpine fir provides a variety of ecosystem services and is a critical component of the spruce-fir alpine forests of the area. With an expected increase in the severity and …

Edaphic And Climatic Regulation Of Microbial Carbon-Use Efficiency In Managed Semi-Arid Systems, Kirsten R. Butcher

All Graduate Theses and Dissertations, Fall 2023 to Present

In agricultural systems, an increasingly prevalent goal is to promote carbon sequestration into stable, mineral-associated soil organic matter, as increases in soil organic matter have been linked to increases in soil water-holding capacity and increases in nutrient availability. Because microbially-produced compounds are the foundation of soil organic matter, understanding interactions between management strategies and abiotic controls on microbial activity can prove invaluable for producers and ranchers interested in building soil organic matter and safeguarding production systems under a changing climate. The ability of microorganisms to contribute to growing soil organic matter stocks is dictated by their carbon-use efficiency, which is …

Restoration Strategies For Wetlands In The Arid West: Seeding And Planting Approaches For Lakeshore Ecosystems, Jes Braun

All Graduate Theses and Dissertations, Fall 2023 to Present

Wetlands are widely recognized for their valuable benefits such as providing habitat, improving water quality, and reducing the impacts of flooding. However, wetlands face threats from development, drought, and invasive species. This is particularly apparent in the arid west, where upstream water use and drought make water scarcer and contribute to dramatically changing water levels. Here, I investigated revegetation techniques for lakeshore wetlands, using Utah Lake as a case study. Although recent management efforts have minimized invasive Phragmites cover, the desired plant communities are not returning as quickly as needed, highlighting the need to research restoration techniques. Through my research, …

Metapopulation Genomics Of American Goshawks In The Intermountain West, Megan M. Sidran

All Graduate Theses and Dissertations, Fall 2023 to Present

Understanding a species dispersal ecology and population dynamics is essential to effectively manage and conserve a species. As advancing technology improves our knowledge of species movements, it is becoming clear that many species form metapopulations to some extent. A metapopulation is a network of interconnected subpopulations that exchange reproductive individuals with subpopulations occupying nearby patches. Metapopulations have been observed in a variety of species, ranging from plants to vertebrates, and can vary greatly in their dynamics (level of connectivity and gene flow) based on the species behavior and life history strategy.

Forming a metapopulation can add much resilience to the …

Developing Empirical Predictive Models To Support Conservation Planning For Threatened Frogs, Toads, And Turtles In South-Coastal California, Umarfarooq Adavudi Abdulwahab

All Graduate Theses and Dissertations, Fall 2023 to Present

Amphibians and reptiles (i.e., herptiles) are among the most threatened groups of species on Earth. The major threats to these species include the direct, indirect, and synergistic effects of habitat loss and fragmentation, invasive species, disease, overexploitation, and pollution. To protect and restore species, natural resource managers need effective, data-driven conservation plans that are grounded in sound knowledge of species distributions and habitat requirements. Species distribution models (SDMs) are popular tools used to assess species-habitat relationships. However, SDMs are sensitive to the choice and quality of input data, both of which can affect model accuracy and precision and lead to …

What Gives Me Hope, Heather M. Leslie

Maine Policy Review

The commentary focuses on the author's experiences over the last several years in Maine where she has conducted research, mentored students, and collaboratde with diverse community partners on a number of projects focused on shellfish fisheries co-management and other community-led resilience projects in coastal Maine.

The Stick Insects (Insecta: Phasmatodea) From The Cloud Forest Of The Chicaque Natural Park, Colombia, Andres David Murcia, Oscar J. Cadena-Castañeda

Insecta Mundi

A faunal study for the order Phasmatodea of the Chicaque Natural Park is presented, including a list of species found, descriptions, redescriptions, and biological notes. A total of nine species were found and studied; two new genera: Ramandeun new genus, Nubilophasma new genus, and four new species: Atrato­morpha jorgei new species, Isagoras franciscoverai new species, Nubilophasma chicaquensis new genus and new species, and Ramandeum coronatum new genus and new species are described. The description of the eggs of the new taxa, of the previously unknown eggs of Paraceroys quadrispinosus (Redtenbacher, 1906), and the redescription of …

Defensive Behaviors Of The Mealybug Nipaecoccus Nipae (Maskell, 1893) (Hemiptera: Pseudococcidae) And The Green Lacewing Ceraeochrysa Claveri (Navás, 1911) (Neuroptera: Chrysopidae), With Videos Of Dorsal Packet Loading And Mealybug Ostiole Function, Erin C. Powell

Insecta Mundi

The interactions between the lacewing Ceraeochrysa claveri (Navás) (Neuroptera: Chrysopidae) larva and the coconut mealybug Nipaecoccus nipae (Maskell) (Hemiptera: Pseudococcidae) were recorded. The third-instar lacewing larva constructed a dorsal packet using mealybug wax from both male pupal cases and the bodies of adult females. Surprisingly, live nymphs were also frequently placed into the dorsal packet. Prey mealybugs were discarded and not incorporated into the packet after consumption. When disturbed, adult female mealybugs reflex bled from their dorsal ostioles, contacting the mouthparts of the lacewing. The lacewing quickly retreated to clean the mouthparts on the substrate, providing further evidence that ostiolar …

Predicting The Potential Distribution In South Korea Of Two Mealybug Species (Hemiptera: Pseudococcidae) Intercepted On Pineapples In Quarantine, S Bin Kim, Soo-Jung Suh

Insecta Mundi

Dysmicoccus brevipes (Cockerell) and Dysmicoccus neobrevipes Beardsley are major pests of pine­apples, ornamentals, and vegetable crops in many countries around the world. The potential distribution of these mealybug pests into South Korea remains a prime concern because of their high incidence in intercep­tions screened during inspection. Hence, these species prompted a modelling effort to assess their potential risk of introduction. Potential risk maps were developed for these pests with the CLIMEX model based on occurrence records under environmental data. The potential distribution of these pests in South Korea in the 2020s, 2050s and 2090s is projected based on the RCP …

A New Species Of Colyphus Spinola (Coleoptera: Cleridae: Clerinae) From Veracruz, Mexico, Jacques Rifkind

Insecta Mundi

Colyphus lostuxtlas new species (Coleoptera: Cleridae: Clerinae) is described from Veracruz, Mexico.

With the addition of the new species described herein, the genus Colyphus Spinola now comprises 27 species, distributed from Mexico to Panama (Ekis 1977; Rifkind 1997, 2014, 2020, 2023; Rifkind and Barr 2011). The spe­cies described herein is known only from a cloud forest reserve (part of La Reserva Biosfera Los Tuxtlas) on the lower slopes of Volcán San Martín in Veracruz, Mexico. Other Colyphus species with distributions in cloud forests include the Costa Rican species C. hansoni Rifkind, C. irazu Ekis, and C. ska Rifkind and Barr, …

Genomics-Based Taxonomic Rearrangement Of Achlyodini And Carcharodini (Lepidoptera: Hesperiidae: Pyrginae), Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

Insecta Mundi

Genomic analysis of Pyrginae Burmeister, 1878 (Lepidoptera: Hesperiidae Latreille, 1809) with an emphasis on the tribes Achlyodini Burmeister, 1878 and Carcharodini Verity, 1940 reveals many incon­sistencies between the resulting phylogeny and the current classification. These problems are corrected by proposing new taxa, changing the ranks of others, or synonymizing them, and transferring species between genera. As a result, five subtribes, one genus, 20 subgenera, and one species are proposed as new: Cyclo­semiina Grishin, new subtribe (type genus Cyclosemia Mabille, 1878), Ilianina Grishin, new subtribe (type genus Iliana E. Bell, 1937), Nisoniadina Grishin, new subtribe (type genus Nisoniades Hübner, [1819]), …

Can The Vegetation Structure And Composition In Urban Green Spaces Determine Diversity Of Green Lacewings (Neuroptera: Chrysopidae)?, Jose I. Martinez, Raiza J. Castillo, Adrián Ardila-Camacho, Charles V. Covell, José Isabel López-Arroyo, Francisco Javier Nava-Guízar

Insecta Mundi

Green spaces represent the only natural areas in several cities around the world, providing good shelters for the local fauna. Based on this premise, many ecological studies have been conducted focused on these areas. Most of these works are about insects, particularly butterflies and beetles. Our study is centered on a different group: green lacewings (Neuroptera: Chrysopidae). These insects exhibit a similar feeding behavior to some other groups, such as beetles. We estimated diversity, richness, distribution, abundance and similarity employing two methods: sweep netting and suction trapping. Also, oviposition hosts were identified in 20 different green spaces. Approximately 740 specimens …

An Illustrated Type Catalog Of Trichodesma Leconte, 1861 (Coleoptera: Ptinidae) From Mexico, With Description Of A New Species, Kyle E. Schnepp

Insecta Mundi

Trichodesma nancyae, new species (Coleoptera: Ptinidae), is described from Mexico. The species is illustrated and diagnosed, bringing the total number of extant species in the genus to 73. Lectotypes for Trichodesma beyeri Fall, Trichodesma scripta Champion, and Trichodesma texana Schaeffer are here designated. Habitus and label photographs are provided for types of 12 of the 13 species occurring in Mexico.

New Plagiosarus Bates, 1880 (Cerambycidae: Lamiinae: Acanthoderini) From Costa Rica And Notes On P. Melampus Congestus Bates, Josef Vlasak, Antonio Santos-Silva

Insecta Mundi

Plagiosarus transversus Vlasak and Santos-Silva, new species (Cerambycidae: Lamiinae: Acanthoderini), is described from Costa Rica. The rank of Plagiosarus melampus congestus Bates, 1885 is discussed.

Descriptions Of One Hundred New Species Of Hesperiidae, Jing Zhang, Qian Cong, Nick V. Grishin

Insecta Mundi

A century and a half since the time of Hewitson, we are experiencing a renaissance in species discovery fueled by whole genome sequencing. A large-scale genomic analysis of Hesperiidae Latreille, 1809 (Lepidoptera), including primary type specimens, reveals a deluge of species new to science. One hundred of them (one in a new genus) are described here from the New World (type localities are given in parenthesis): Drephalys (Drephalys) diovalis Grishin, new species (Ecuador: Napo), Euriphellus panador Grishin, new species (Ecuador: Esmeraldas), Euriphellus panamicus Grishin, new species (Panama: Panama), Cecropterus (Thorybes) viridissimus Grishin, new species (Ecuador: Zamora-Chinchipe), …

Interactions Between Sediment Mechanical Structure And Infaunal Community Structure Following Physical Disturbance, William Cyrus Roger Clemo

<strong> Theses and Dissertations </strong>

Shallow, river-influenced coastal sediments are important for global carbon storage and nutrient cycling and provide a habitat for diverse communities of invertebrates (infauna). Elevated bed shear stress from extreme storms can resuspend, transport, and deposit sediments, disrupting the cohesive structure of muds, and sorting and depositing sand eroded from beaches. These physical disruptions can also resuspend or smother infauna, decreasing abundances and changing community structure. Infaunal activities such as burrowing, tube construction, and feeding can impact sediment structure and stability. However, little is known about how physical disturbance impacts short and long-term sediment habitat suitability and whether disturbance-tolerant infauna influence …

Effect Of Plant Genotype On Plant-Microbe Interactions And Multi-Generation Ecosystem Selection Of Microbial Communities Associated With Plant Biomass In Arabidopsis Thaliana, Nachiket Shankar

Graduate Doctoral Dissertations

The microbiome's role in shaping host phenotypes is a critical area of investigation, with implications for ecology, evolution, and host health. Dynamic plant-microbe interactions are influenced by factors like soil type, environment, and genotype. Understanding their impact on microbial communities is key for tailored plant benefits. An artificial ecosystem selection experiment was done for eight generations with Arabidopsis thaliana Ler and Cvi. This revealed distinct microbial communities shaped by genotypes and biomass treatments. Initially, environment dominated, but over time, genotype and biomass gained influence, explaining ~40% of the variation. Moreover, genotype-specific rhizobacterial associations were observed, enhancing understanding of community dynamics …

Effects Of A Protection Zone In A Reaction-Diffusion Model With Strong Allee Effect., Isaac Johnson

Electronic Theses and Dissertations

A protection zone model represents a patchy environment with positive growth over the protection zone and strong Allee effect growth outside the protection zone. Generally, these models are considered through the corresponding eigenvalue problem, but that has certain limitations. In this thesis, a general protection zone model is considered. This model makes no assumption on the direction of the traveling wave solution over the Strong Allee effect patch. We use phase portrait analysis of this protection zone model to draw conclusions about the existence of equilibrium solutions. We establish the existence of three types of equilibrium solutions and the necessary …

Specialized Recreation, Spatial Behavior, And Ecological Implications In The Nature Reserve Of Orange County, Ca, Jake Van Deursen

All Graduate Theses and Dissertations, Fall 2023 to Present

A widespread surge in park and protected area (PPA) visitation strikes managers with the imminent challenge of preserving ecological conditions and maintaining accessibility in the open spaces that are a fundamental component to the health and wellness needs of society. In the field of recreation resource management, recreation specialization, the selective channeling of interests and abilities into a specific recreational activity, has contributed to comprehensive understandings of recreation behavior, site preference, management perceptions and conservation support. Contributing to historical understandings of specialization can inform recreation planning on the diversity of uses occurring in urban-proximate PPAs. Survey data providing information on …

Dusky Grouse Population Ecology And Thermal Landscape Ecology In The Great Basin Ecosystem, Stephanie M. Landry

All Graduate Theses and Dissertations, Fall 2023 to Present

Dusky Grouse are a mountainous forest grouse found throughout the western, inland mountain ranges of the United States and Canada. While a few studies have looked at Dusky Grouse in the Rocky Mountain Ecosystem of their range, there have been no prior studies of the Dusky Grouse in the Great Basin Ecosystem aside from a brief survey by Zwickel and Bendell in 2004 in the Duck Creek Range of Nevada. With the available habitats differing in both species diversity and availability on the landscape between the two Ecosystems, I wanted to assess characteristics about the Dusky Grouse populations at the …

Ecology And Management Of Dyer's Woad (Isatis Tinctoria) In Northern Utah, Erin Marie Hettinger

All Graduate Theses and Dissertations, Fall 2023 to Present

Dyer’s woad (Isatis tinctoria L.) is a non-native forb that continues to threaten natural areas throughout Northern Utah and much of the Intermountain West. Once introduced, dyer’s woad can become extremely invasive, decreasing forage quality, and displacing native species. While dyer’s woad is found throughout much of Northern Utah, its range in other states remains limited. If promptly managed, control success in these areas will be much higher and populations may be kept at bay before ecological damage becomes severe.

This project tested the ability of dyer’s woad seedlings to compete with common rangeland grasslands at varied densities as …

Reducing Inputs And Adding Value To Turfgrass Systems Through Clover Inclusion And Plant Growth-Promoting Rhizobacteria Applications, Paige E. Boyle

All Graduate Theses and Dissertations, Fall 2023 to Present

Recently, the US has seen an expansion in the amount of turfgrass land cover (lawns, parks, roadsides, sports fields, and golf courses), as well as an interest in reducing fertilizer, water, and pesticide use in these grass systems. To help maintain quality and function while reducing resource inputs, two promising approaches have emerged: planting clover into lawns and applying plant growth-promoting rhizobacteria.

White clover and grass mixtures have been studied for their ability to cut down on fertilizer usage and provide a uniform, dark green lawn, but other clover types have not been as widely studied and may provide similar …

An Integrative Approach To Managing A Species Of Conservation Concern: Resource Selection, Spatial Ecology, And Population Genetics Of The Green Salamander (Aneides Aeneus), Megan Novak

All Dissertations

The relationship between wildlife and the environment they inhabit is dependent on both spatial and temporal scales. It is therefore crucial that biological investigations account for ecological scale when analyzing patterns and processes established, particularly when such investigations inform conservation management plans. This dissertation provides extensive insight into the conservation biology of the green salamander (Aneides aeneus), a critically imperiled species in South Carolina. The green salamander is a species that exists in a patchy network of rock outcrops within mountainous forest landscapes, and most studies on habitat suitability for green salamanders have been conducted on the macrohabitat, …