Ecology and Evolutionary Biology Commons^™

Historical Ecology Of The San Diego Sport Fishery: Catch Composition, Species Trends, And Fishing Effort From 1959 To 2011, Rebecca Schwartz Lesberg

Theses

Like ocean systems around the world, species targeted by the San Diego sportfishery are subject to myriad threats from human activity, with several species already showing documented decline. However, long-term fisheries datasets are often lacking, limiting natural resource managers’ ability to appropriately manage these ecologically and economically important species. Therefore, this study used daily reports published in two Southern California newspapers to examine changes in catch composition, effort, and catch per unit effort (CPUE) from 1959-2011 for the San Diego commercial passenger fishing vessel (CPFV) sportfishery. This study then tested the relationship between those patterns and three large scale oceanographic …

Functions And Applications Of Critical Zone Observatory Of Luancheng Agro-Ecosystem Experimental Station, Chinese Academy Of Sciences (Luancheng Critical Zone Observatory), Yanjun Shen, Leilei Min, Lin Wu, Yan-Jun Shen, Hongjun Li, Guanglu Zhang

Bulletin of Chinese Academy of Sciences (Chinese Version)

The Luancheng Agro-Ecosystem Experimental Station, the Chinese Academy of Sciences, is located in the piedmont plain area of North China Plain and the middle section of the Taihang Mountain alluvial plain. It is a typical representative of the high-yield agricultural eco-system in the groundwater irrigation area. Due to the large-scale and high-intensity agricultural production in recent decades, the regional groundwater has been seriously over exploited, and the risk of groundwater pollution has increased. However, the surface agro-ecosystem and aquifer are separated by thick vadose zones, hence the mechanism of the impact of surface agricultural activities on the quantity and quality …

A Whole-Genome Scan For Association With Invasion Success In The Fruit Fly Drosophila Suzukii Using Contrasts Of Allele Frequencies Corrected For Population Structure, Laure Olazcuaga, Anne Loiseau, Hugues Parrinello, Mathilde Paris, Antoine Fraimout, Christelle Guedot, Lauren M. Diepenbrock, Marc Kenis, Jinping Zhang, Xiao Chen, Nicolas Borowiec, Benoit Facon, Heidrun Vogt, Donald K. Price, Heiko Vogel, Benjamin Prud'homme, Arnaud Estoup, Mathieu Gautier

Life Sciences Faculty Research

Evidence is accumulating that evolutionary changes are not only common during biological invasions but may also contribute directly to invasion success. The genomic basis of such changes is still largely unexplored. Yet, understanding the genomic response to invasion may help to predict the conditions under which invasiveness can be enhanced or suppressed. Here, we characterized the genome response of the spotted wing drosophila Drosophila suzukii during the worldwide invasion of this pest insect species, by conducting a genome-wide association study to identify genes involved in adaptive processes during invasion. Genomic data from 22 population samples were analyzed to detect genetic …

Architectural Complexity Of Oyster Reefs: Evaluating The Relationship Between Interstitial Spaces And Macroinvertebrates, Elizabeth A. Salewski

USF Tampa Graduate Theses and Dissertations

Understanding how organisms utilize and interact with habitat features may improve predictions of habitat preferences and species interactions, and may assist in the development of conservation and management strategies. The architecture of a habitat provides a complex array of structural features that influences interactions between the abiotic and biotic factors, and impact the biodiversity and species abundance through altering recruitment patterns and the survival of associated fauna. Characterizing potential refugia however has been challenging with minimal attempts to measure interstitial space size and abundance in reef systems. Here, I present novel methodology utilizing 3D technology to characterize interstitial spaces within …

Zebrafish (Danio Rerio) Hoxb6: An Exploration Into The Divergence Of Genomic Dna Sequence And Gene Expression Across Teleost Fishes Post-Genome Duplication, Amber Lynn Rittgers, Pierre Le Pabic, Adam Davis

Georgia Journal of Science

Hoxb6 is an evolutionarily conserved developmental regulatory gene that functions, in part, to pattern several organs and organ systems within the embryonic trunk during vertebrate embryogenesis. The cis-regulatory circuitry mediating trunk expression in mouse (Mus musculus) may be conserved across gnathostome vertebrates, as several other species show similar trunk expression patterns, including chicken (Gallus gallus), dogfish shark (Scyliorhinus canicula), and several teleost fishes. A whole genome duplication event that occurred in the lineage leading to teleost fishes has generated at least two Hoxb6 genes, hoxb6a and b6b. Two teleost fishes of the …

Discovery Of Epiphytic Lichens In Connecticut Suggests Novel Introduction And Reintroduction Via Horticultural Practices, Henry A. Frye, Zachary Muscavitch, Bernard Goffinet

EEB Articles

The discovery of Teloschistes chrysophthalmus in Connecticut more than one hundred years since its last known occurrence is argued to result from human introduction. The species only occurred on the horticultural tree, Gleditsia triacanthos var. inermis, planted on the University of Connecticut campus. Gleditsia triacanthos is not indigenous to northeastern North America, but is widespread in the central United States. Other epiphytic macrolichens also recorded on this phorophyte include Punctelia bolliana and Parmotrema austrosinense, both widespread in the central United States, and new to Connecticut and New England, respectively. This is likely the first reported case of combined …

Artisanal And Aboriginal Subsistence Whaling In Saint Vincent And The Grenadines (Eastern Caribbean): History, Catch Characteristics, And Needs For Research And Management, Russell Fielding, Jeremy J. Kiszka

Honors College Faculty Publications

Whaling has been a contentious international environmental issue for decades and carries complex ecological and socioeconomic implications. In Saint Vincent and the Grenadines (SVG), a small archipelagic nation located in the Eastern Caribbean, present-day whaling traces its origin to local interaction with American-based whalers during the nineteenth and early twentieth centuries. When American whaling in the region ceased, local shore-based whaling arose to fill the niche and to exploit the remaining, though diminished, stocks of large whales, as well as stocks of small cetaceans that the American whalers had not targeted as heavily. After a period of expansion throughout the …

Environmental Health - The Impact Of Oil Sands Mining On Peatland Ecosystems In Alberta, Canada, Melanie A. Vile

Sustainability Research & Practice Seminar Presentations

No abstract provided.

In Defense Of Plants: Salicylic Acid In A Host-Parasite-Pathogen System, Timothy Kyle Martin

Theses and Dissertations

Cuscuta pentagona is an obligate parasitic plant that uses a specialized organ, known as a haustorium, to penetrate host xylem and phloem to absorb water and nutrients from its hosts. As holoparasites, they lack chloroplast and therefore cannot photosynthesize. Bidirectional movement at the haustoria raises the possibility that the parasite can transmit defense signals from one host to another, though in what form is unclear. The biotrophic feeding mode, lack of chloroplast, and bidirectional movement across the haustoria lead me to hypothesize that (1) C. pentagona as a shoot parasite would elicit a systemic acquired resistance response in a host …

Microplastics: Nacogdoches County’S Hidden Threat, Jordan Stanford, Sydney Matlock, Courtney Sims, Samantha Montes

Undergraduate Research Conference

Microplastics and their threat to marine environments are well known, but studies in freshwater environments are few and far between. Microplastics can be created by the breaking down of plastics or in the process of making plastics. They affect biological lifeforms in a multitude of ways, water temperature, permeability of the sediment. Pollution in Texas waterways have motivated groups like the Environmental Protection Agency, Trash Free Texas, and Environment Texas to get involved. The objectives of this study are two analyze Bonita and La Nana Bayou for microplastic presence and to educate and create awareness for Nacogdoches County on microplastics. …

The Phoenix, Fernanda Perez-Alvarez

Montserrat Annual Writing Prize

This article uses a mythical creature, the phoenix, to examine and illustrate the biological principles for generation of an adult body plan from a single cell. Using the study of developmental biology, it explores the cellular and molecular biology that underpins the massive complexity of creating an adult body plan. It also explores the similarities and differences between different embryos, and how nature and evolution have shaped the biology of those embryos to create different body plans.

Possible Mechanisms Behind Impaired Glucose Metabolism In Niacin-Deficient Mice, Sierra Lopez

Student Research Symposium

Niacin, a component of vitamin B3, is necessary for the synthesis of nicotinamide adenine dinucleotide (NAD). NAD is an essential coenzyme in many biologic functions, including a number of metabolic processes that regulate glucose and fat homeostasis. Humans obtain niacin in its dietary form, common in meats, nuts, legumes and some leafy vegetables. While severe niacin deficiency, or pellagra, has been drastically reduced in the United States, some populations remain vulnerable to deficiency, particularly pregnant women, cancer patients, the elderly and alcoholics. Age-related NAD deficiency is emerging as being positively correlated with cognitive decline and impaired dermal repair.. At the …

Correlation Between Abundance Of Fossils In Harvester Ant Nest And Proximity Of Fossil Sites, Hayeong Woo

Campus Research Month

Harvester ants have an interesting behavior of bone collecting. Therefore, harvester ant nests that are positioned around the fossil sites contain various fossil fragments. If there is a statistically significant correlation between the abundance of fossil fragments and the distance of the ant nests from the main fossil sites, ant nests can potentially be used to predict the proximity of the main fossil sites.

Monitoring The Spatial Ecology Of Puma Concolor Along A Wildland-Urban Gradient, Natalie D'Souza, Tim Cromwell

Student Research Symposium

The wildland-urban gradient is a hotspot for human-wildlife conflict, as resources and land-use are often shared between the two. As humans encroach more into wildlife lands, humans become ecological players in urban, as well as wildland, ecosystems. Expanding into wildlife habitat creates gradients of human disturbance that can negatively alter ecosystem dynamics. Many species must adapt to human-dominated environments, or else face extinction. Cache Valley, Utah, has a growing wildland-urban interface that borders the southern Bear River Range, an extension of the Wasatch Front, and is mostly contained within Cache National Forest. Cache County is the sixth-fastest growing county in …

Widespread Mortality Of Trembling Aspen (Populus Tremuloides) Throughout Interior Alaskan Boreal Forests Resulting From A Novel Canker Disease, Roger W. Ruess, Loretta M. Winton, Gerard C. Adams

Aspen Bibliography

Over the past several decades, growth declines and mortality of trembling aspen throughout western Canada and the United States have been linked to drought, often interacting with outbreaks of insects and fungal pathogens, resulting in a “sudden aspen decline” throughout much of aspen’s range. In 2015, we noticed an aggressive fungal canker causing widespread mortality of aspen throughout interior Alaska and initiated a study to quantify potential drivers for the incidence, virulence, and distribution of the disease. Stand-level infection rates among 88 study sites distributed across 6 Alaska ecoregions ranged from < 1 to 69%, with the proportion of trees with canker that were dead averaging 70% across all sites. The disease is most prevalent north of the Alaska Range within the Tanana Kuskokwim ecoregion. Modeling canker probability as a function of ecoregion, stand structure, landscape position, and climate revealed that smaller-diameter trees in older stands with greater aspen basal area have the highest canker incidence and mortality, while younger trees in younger stands appear virtually immune to the disease. Sites with higher summer vapor pressure deficits had significantly higher levels of canker infection and mortality. We believe the combined effects of this novel fungal canker pathogen, drought, and the persistent aspen leaf miner outbreak are triggering feedbacks between carbon starvation and hydraulic failure that are ultimately driving widespread mortality. Warmer early-season temperatures and prolonged late summer drought are leading to larger and more severe wildfires throughout interior Alaska that are favoring a shift from black spruce to forests dominated by Alaska paper birch and aspen. Widespread aspen mortality fostered by this rapidly spreading pathogen has significant implications for successional dynamics, ecosystem function, and feedbacks to disturbance regimes, particularly on sites too dry for Alaska paper birch.

Historic Declines In Growth Portend Trembling Aspen Death During A Contemporary Leaf Miner Outbreak In Alaska, Melissa A. Boyd, Logan T. Berner, Adrianna C. Foster, Scott J. Goetz, Brendan M. Rogers, Xanthe J. Walker, Michelle C. Mack

Aspen Bibliography

Climate change-driven droughts and insect outbreaks are becoming more frequent and widespread, increasing forest vulnerability to mortality. By addressing the impacts of climate and insects on tree growth preceding death, we can better understand tree mortality risk under a changing climate. Here, we used tree stature and interannual growth (basal area increment; BAI) to assess processes leading to trembling aspen (Populus tremuloides) survival or mortality during an unprecedented leaf miner (Phyllocnistis populiella) outbreak in boreal North America. We identified eight sites (22 plots) in the longest running forest monitoring network in Alaska, spanning ~350 km of …

Using Enclosed Y-Mazes To Assess Chemosensory Behavior In Reptiles, M. Rockwell Parker, Andrea F. Currylow, Eric A. Tillman, Charlotte J. Robinson, Jilian M. Josimovich, Isabella M.G. Bukovich, Lauren A. Nazarian, Melia G. Nafus, Bryan M. Kluever, Amy A. Yackel Adams

United States Department of Agriculture Wildlife Services: Staff Publications

Reptiles utilize a variety of environmental cues to inform and drive animal behavior such as chemical scent trails produced by food or conspecifics. Decrypting the scent-trailing behavior of vertebrates, particularly invasive species, enables the discovery of cues that induce exploratory behavior and can aid in the development of valuable basic and applied biological tools. However, pinpointing behaviors dominantly driven by chemical cues versus other competing environmental cues can be challenging. Y-mazes are common tools used in animal behavior research that allow quantification of vertebrate chemosensory behavior across a range of taxa. By reducing external stimuli, Y-mazes remove confounding factors and …

Research Grant Management Bes 510, Michael Cerbo

Library Impact Statements

No abstract provided.

Kleptoparasitic Hawk-Dove Games, Isabella H. Evans-Riester, Chasity T. Kay, Karina L. Ortiz-Suarez, Jan Rychtář, Dewey Taylor

Spora: A Journal of Biomathematics

The Hawk-Dove game is a classical game-theoretical model of potentially aggressive animal conflicts. In this paper, we apply game theory to a population of foraging animals that may engage in stealing food from one another. We assume that the population is composed of two types of individuals, Hawks and Doves. Hawks try to escalate encounters into aggressive contests while Doves engage in non-aggressive displays between themselves or concede to aggressive Hawks. The fitness of each type depends upon various natural parameters, such as food density, the mean handling time of a food item, as well as the mean times of …

Adaptive Plasticity Of Coloration In Response To Environmental Change, Karissa Coffield

Scholars Week

When rapid environmental changes occur, different selective forces can create phenotypic trade-offs in which a trait can provide fitness benefits or costs under different environmental conditions. Amphibians are particularly vulnerable to environmental change, and previous research has revealed that some species will plastically respond to variation in temperature and ultra-violet radiation (UVR) by altering their coloration. Divergent selection on coloration may change with elevation and climate induced shifts in temperature because high temperatures are likely to result in lighter color morphs but as elevation increases, UVR exposure increases leading to the prediction that darker color morphs will be more common. …

Using Modeling To Investigate Factors Driving Avian Diversity In Urban Ecosystems, Clay Bliznick

Scholars Week

Anthropogenic influences have altered global landscapes considerably throughout the past two centuries, resulting in the decline of natural land cover types. Conversely, land cover types such as cropland and urban areas that are derived from human activities have experienced vast expansion. This landscape transition has serious implications for ecosystem services. To mitigate the loss of these services, it is necessary to maintain ecological integrity within these anthropogenically-influenced systems. Being able to support high biodiversity is an indicator of well-functioning ecosystems, thus quantifying biodiversity and assessing its contributing factors can be useful for developing management strategies in artificial environments. Our objective …

S Is For Sandhill: A Crane Alphabet, Paul A. Johnsgard

Zea E-Books Collection

This is a book of cranes, from A to Z, written and illustrated by the world’s foremost authority on the 15 species of these wonderful and ancient birds. It is a book for all ages, and for all who love and marvel at the beauty, order, and variety of the natural world.

Cranes exhibit complex behavior, pair-bonding, and fascinating social interactions. They migrate huge distances, crossing continents, oceans, and mountains between their nesting and wintering areas. Seven of the world’s 15 crane species are listed as “vulnerable,” three as “endangered,” one as “critically endangered,” and only three as of “least …

The Insular Herpetofauna Of Mexico: Composition, Conservation, And Biogeographic Patterns, Juan Valentín Pliego‐Sánchez, Christopher Blair, Aníbal H. Díaz De La Vega‐Pérez, Víctor H. Jiménez‐Arcos

Publications and Research

We compile a Mexican insular herpetofaunal checklist to estimate endemism, conservation status, island threats, net taxonomic turnover among six biogeographic provinces belonging to the Nearctic and Neotropical regions, and the relationships between island area and mainland distance versus species richness. We compile a checklist of insular herpetofaunal through performing a literature and collection review. We define the conservation status according to conservation Mexican law, the Red List of International Union for Conservation of Nature, and Environmental Vulnerability Scores. We determine threat percentages on islands according to the 11 major classes of threats to biodiversity. We estimate the net taxonomic turnover …

What’S The Buzz?, Christine L. Moskalik

Teacher Resources

Read more: Moskalik, C. (2021). What’s the Buzz? A hands-on, interdisciplinary, & FUN way to learn about circuits, energy, engineering, bee communication and pollination. Science and Children. National Science Teaching Association. Volume 58 (Issue 5). May/June 2021.

Habitat Partitioning And Associated Morphological Differences Among Three Species Of Catostomidae (Teleostei: Actinopterygii) In The South Fork Roanoke River, Virginia, Steven L. Powers, Dakota R. Spruill

Virginia Journal of Science

The upper Roanoke River has 11 species of Catostomidae including Thoburnia rhothoeca, Torrent Sucker; Moxostoma cervinum, Blacktip Jumprock; and Moxostoma ariommum, Bigeye Jumprock. Resource partitioning appears to be a key component of maintaining diverse fish assemblages with habitat and food partitioning cited as especially important in communities containing members of the same family. The diets of these species have been documented in previous work revealing only modest differences among them. Snorkeling observations and subsequent quantification of microhabitat were conducted to illuminate habitat partitioning among these morphologically and ecologically similar species. Thoburnia rhothoeca inhabited the shallowest, fastest water, over the …

Overwinter Ecology Of Rusty Blackbirds (Euphagus Carolinus) In Arkansas, Araks Ohanyan

ATU Theses and Dissertations 2021 - Present

Rusty Blackbirds are one of the most rapidly declining songbirds in North America. They have lost an estimated 85-95% of their population since the 1960s. Unfortunately, we currently do not know what is causing their decline. However, since habitat alteration and loss in their nonbreeding range has been much more severe than in their breeding range, many think the decline is associated with winter habitat loss. Consequently, knowledge of winter ecology, with a focus on habitat use and selection, may provide management insights useful for reversing the decline. My field assistants and I (hereafter we) used radio telemetry to collect …

Stars Data Collection Summative Report (Spring 2021), Amanda Rees

Campus Sustainability Coordination & Planning

In spring 2021, Dr. Amanda Rees' students in ITDS 1779I Scholarship Across the Disciplines: Campus Sustainability in a Global Context learned about climate change, Project Drawdown (a plan to reduce greenhouse gas emissions by 2050), Drawdown Georgia (Georgia's plan for carbon reduction), how we can assess campus sustainability, and conducting data collection on how sustainability is infused into the academic life of the campus. Students presented their report to our community partner the CSU's Office of Sustainability via zoom. NOTE: The zoom presentation of this report was in conjunction with Dr. Stacey Blershe's environmental studies course which featured students presenting …

Breeding Status Of Louisiana Waterthrush (Parkesia Motacilla) In The Niobrara River Valley, North-Central Nebraska, W. Ross Silcock

Nebraska Bird Review

An unexpected Louisiana Waterthrush breeding range extension of some 200 miles westward into the Niobrara River Valley was documented in 2021 when Renee Tressler photographed and recorded adults and two fledged young, as well as an adult carrying food, on Fort Falls Trail, Fort Niobrara NWR, Cherry County, 31 May-14 Jun 2021 (Tressler 2021a, 2021b). Around the same time, “at least two singing individual” Louisiana Waterthrushes were found by Paul Dougherty some eight miles to the east at Smith Falls State Park, Cherry County, 7 June 2021, one of which was recorded; no breeding evidence was reported, although the presence …

Alfred Russel Wallace Notes 17: More On The South Asian Connection, Charles H. Smith

Faculty/Staff Personal Papers

During his school years the arts and cultural historian and metaphysician Ananda Coomaraswamy (1877-1947) was clearly influenced by Alfred Russel Wallace, and is known later to have corresponded with, and supplied information to, him. Up to now the connections involved had been obscure, but a new investigation suggests that Wallace had previously interacted with Ananda’s mother and/or father.

Assessing And Mapping The Spatial-Temporal Change In Forest Phenology Of Arabuko-Sokoke Forest Using Moderate Resolution Satellite, Bailey Ytterdahl

Independent Study Project (ISP) Collection

This study focuses on coastal forests in Kenya that have some of the highest variety of flora and fauna, specifically Arabuko Sokoke Forest. Arabuko Sokoke Forest is located 110 miles north of Mombasa and 18 kilometers south of Malindi. This forest is known to be a worldwide biodiversity hotspot that is home to endemic and rare plants and animals. Within the Arabuko Sokoke Forest ecosystem, there are two main issues that challenge the conservation of the area. First, there has been more competition for land, primarily for agriculture and development. Second, there is an increase demand for forest resources due …