Ecology and Evolutionary Biology Commons^™

Augmenting Benthic Habitat Mapping With Low-Cost Imagery: An Application Of The Coastal And Marine Ecological Classification Standard (Cmecs), Sean V. Terrill

Graduate Masters Theses

One of the first steps of ecosystem-based management should be to classify and map habitats. The Coastal and Marine Ecological Classification Standard (CMECS) was adopted by the federal government to standardize habitat classification in coastal U.S. waters. CMECS provides a hierarchal framework to define and interpret benthic habitats and biotopes but does not prescribe specific sampling methods to adopt. Imagery techniques have been utilized for many decades in benthic ecology but have rarely been employed in habitat classification using CMECS. Furthermore, no study to date has quantitatively examined the benefit of incorporating benthic imagery into the classification of biotopes using …

Community Structure And Dynamics Of Benthic Macroinvertebrates In A Recreated Headwater Stream System On A Valley Fill In A Retrofitted Watershed Located In The Appalachian Coalfields Of Southeastern Kentucky (U.S.A.), Steven W. Bailey

Electronic Theses and Dissertations

The extraction of coal from steep-gradient surface mining sites such as in the Appalachian Coalfields of the U.S. produces excess debris that is often placed in adjacent valleys resulting in the creation of valley fills. Not only are headwater streams buried in the process, but watershed functions are either destroyed outright, or become fragmented and disconnected from adjacent ecosystems resulting in adverse effects to downstream biological communities. In this dissertation, the dynamics of stream macroinvertebrate community structure, composition, diversity, and biotic integrity are assessed at a “proof of concept” stream system recreated on a retrofitted valley fill. For comparison, two …

Nematode Biodiversity In Lincoln, Nebraska's Tallgrass Prairie Corridor, Abigail Borgmeier

Department of Plant Pathology: Dissertations, Theses, and Student Research

The tallgrass prairie was once one of the most diverse grasslands on the planet, however over 95% has been converted to agriculture in the past 150 years. The remaining prairie is still host to a wide variety of plants, insects, mammals, and soil-dwelling microorganisms, creating an incredibly complex ecosystem. The first aim of this study is to compare three approaches for the measurement of nematode diversity within a 10-mile-long protected prairie habitat corridor near Lincoln, Nebraska. The methods are 1) a traditional morphological analysis of 150 nematodes per study site, 2) a metabarcoding analysis using the 18S genetic marker of …

Social And Ecological Correlates Of Avian Infection By Haemosporidian Blood Parasites, Ian R. Hoppe

School of Natural Resources: Dissertations, Theses, and Student Research

Haemosporidian parasites are a significant source of morbidity and mortality for birds. There is growing recognition of the negative consequences of haemosporidian infections for wild birds at individual and population levels. Avian haemosporidians are geographically widespread, have been detected from a phylogenetically diverse array of hosts, and have been the focus of extensive research due to their impacts on birds and their similarity to vector-borne diseases of humans. However, factors influencing haemosporidian transmission, especially transmission between species, are poorly understood. To better understand these influences, we compared prevalence and diversity of haemosporidian blood parasite infections among species in a behaviorally …

Host Community Diversity Interacts With Soil Biota And Water Availability To Predict Foliar Pathogen Damage And Diversity On Tallgrass Prairie Plants., Aspen J. Workman

College of Arts & Sciences Senior Theses

The provisioning of ecosystem services in tallgrass prairies is mediated by interactions between the plants, their associated above- and belowground microbiota, and the abiotic environment, but global change alters these interactions through a variety of pathways. This study investigates the interactions between belowground microbiota, foliar pathogens, and their host plants in order to better understand how ecosystem functioning may change in a tallgrass prairie system under an altered watering regime. The project focuses on North American tallgrass prairie ecosystems and asks whether host plant diversity and abundance, soil biota, and water availability interactively affect plant susceptibility to damage by a …

Ichthyofaunal Utilization Of A Man-Made Salt Marsh Creak In Mission Bay, California, 25 Years After Creation, Maria Angst

McNair Summer Research Program

Southern California’s wetlands are drastically declining due to human activities. Increasingly, marsh restoration and creation are being used to mitigate such losses. This study used minnow traps to resample the ichthyofauna of a created marsh (Crown Point Mitigation Site; CPMS) and an adjacent natural marsh (Kendall Frost) in Mission Bay, California, 26 years following the marsh creation. These data were compared to data collected from 1995-1998, immediately after marsh creation. Fishes trapped included Fundulus parvipinnis, Gillichthys mirabilis, Ctenogobius sagittula, Atherinops affinis, and Mugil cephalus. Species richness and dominance measures were higher in the natural relative to the created marsh. The …

Understanding The Barriers And Facilitators Of Lidar Adoption For Flood Risk Management In The Pacific Northwest, U.S., Tara Pozzi

Boise State University Theses and Dissertations

The understanding of factors that influence technology adoption in emergency planners is foundational for ensuring resilient communities to hazards in the future. We explore these factors through an interdisciplinary, social-ecological science lens. In this thesis, we use cultural evolutionary theory to understand the facilitators and barriers of Light Detection and Ranging (lidar) adoption in flood risk management, as a case study of technology adoption for long-term risk mitigation. We then disseminate our findings through three educational outlets: a webinar, a white paper (Appendix A), and a Story Map. This thesis contributes to our intellectual understanding of technology adoption, as …

Upscaling Tree Demography To Heterogenous Landscapes Using Models And Remote Sensing, Cristina Barber

Boise State University Theses and Dissertations

Tree demography is foundational to ecology and conservation, from mass tree die-offs to forest recovery. Plot-level studies of tree demography, including field measurements of tagged individuals, have been fundamental for developing ecological theory and forest management strategies. However, the limited spatial extent of field plots impedes generalizing plot-level models for spatial predictions across heterogeneous landscapes. Novel high-spatial resolution remote sensing imagery has opened the possibility for measuring tree demographic rates with continuous spatial coverage at landscape to regional extents. Remote sensing derived measurements could address pressing research questions, including disentangling causes of high variation in natural regeneration across secondary forest …

Corridors For Coexistence: Evaluating Spatiotemporal Impacts Of Livestock On Wildlife Community Dynamics, Edward Trout

Boise State University Theses and Dissertations

Livestock depredation by carnivores is a globally pervasive and detrimental interaction that leads to economic loss and retaliatory killings. Livestock trailed annually on US Rangelands impact wildlife communities- competing with ungulate herbivores for forage, disrupting predator-prey dynamics, and shifting community structures. In order to promote coexistence in these human-wildlife systems, a better understanding of how these processes interact is needed. However, studies on the topic fail to fully capture both the spatial and temporal signals of moving livestock herds.

In this study I investigated the effects of sheep grazing on a wildlife community in the Big Wood River Valley, Idaho. …

Investigation Into The Evolution Of Heterogeneity Within Secondary Replicons And Their Maintenance In Genus Variovorax, Christopher Ne Ville

Electronic Theses, Projects, and Dissertations

Approximately 10% of all bacterial genomes sequenced thus far contain a secondary replicon. This considerable genetic reservoir contains many potentially mobilizable elements, allowing for the formation of many unique secondary replicons. This property of bacterial populations vastly increases the genomic diversity available to species that effectively take up and maintain these replicons. Members of the genus Variovorax have extensive heterogeneity in genome architecture, including sequenced isolates containing plasmids, megaplasmids, and chromids. Using available Illumina data on the NCBI database, we have completed these assemblies using 3^rd generation sequencing methods on 17 members of this genus. We have sequenced, assembled, …

Alfred Russel Wallace Notes 18: Wallace On The Balance Of Nature, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace (1823−1913) had a unique perspective on the ‘balance of nature’: he avoided classical thoughts on the subject, but nevertheless seems to have adopted elements of the ‘balance’ concept while acknowledging that irreversible change occurs at both the biological and environmental levels. Wallace’s position can be understood from his grounding in Humboldtian ‘equilibrium of forces’ thinking, and his turn toward ‘final causes’-based interpretations.

Analyzing Genetic Variation Of The Tussock Cottongrass Among Ecotypes Along A Latitudinal Gradient Through Transcriptomics, Carmen Webster

Open Access Theses & Dissertations

The Arctic is seeing some of the most extreme effects of climate change that induce environmental pressures, including warmer temperatures and longer growing seasons. Due to this, taxa may need to adapt or migrate in order to survive. The long-lived tussock cottongrass, Eriophorum vaginatum, is a foundation species in the Arctic, and little is currently known about the genetic constraints that could be playing a role in how this species will respond to the changing climate. Specific gene families that play an important role in signaling genetic pathways related to plant phenology and response to environmental stress are likely to …

Restoring Biogeochemical Properties In Drylands And Exploring Functional Roles Of Biological Soil Crust, Kristina Young

Open Access Theses & Dissertations

Degradation in dryland regions is a persistent and accelerating problem. Though the mechanisms that initiate and maintain dryland degradation have been well studied, restoring productivity and function to degraded dryland ecosystems remains difficult. Here, I present three chapters that address gaps in our understanding of dryland functions and our ability to restore them. I begin by examining how dryland restoration research has addressed altered biogeochemical cycling in drylands and how to expand current understandings of dryland biogeochemistry into restoration. I then present two chapters that explore mechanistic and quantitative understandings of the contribution of biocrusts to soil nutrient cycling both …

Ecological Correlates Of Alligator Snapping Turtle Bite Performance, Ashley Herrin Gagnon

Graduate Theses/Dissertations

The Alligator Snapping Turtle (Macrochelys temminckii) is one of many turtle species facing conservation challenges. Nearly extirpated in the 1980s, it is currently the subject of a head-start initiative, of which, any lasting behavioral or physiological effects were—until now—unknown! To evaluate the ability of captive-reared individuals to excel in natural habitats, and to foresee any future research or conservation challenges regarding this animal, I explored a suite of variables that influence bite performance and behaviors including captive or free-ranging status, and environmental conditions including body temperature and season. My results indicated that free-ranging M. temminckii outperform those residing …

Avian Influenza A Virus Susceptibility, Infection, Transmission, And Antibody Kinetics In European Starlings, Jeremy W. Ellis, J. Jeffrey Root, Loredana M. Mccurdy, Kevin T. Bentler, Nicole L. Barrett, Kaci K. Vandalen, Katherine L. Dirsmith, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

Avian influenza A viruses (IAVs) pose risks to public, agricultural, and wildlife health. Bridge hosts are spillover hosts that share habitat with both maintenance hosts (e.g., mallards) and target hosts (e.g., poultry). We conducted a comprehensive assessment of European starlings (Sturnus vulgaris), a common visitor to both urban and agricultural environments, to assess whether this species might act as a potential maintenance or bridge host for IAVs. First, we experimentally inoculated starlings with a wild bird IAV to investigate susceptibility and replication kinetics. Next, we evaluated whether IAV might spill over to starlings from sharing resources with a …

Mesopredator Frugivory Has No Effect On Seed Viability And Emergence Under Experimental Conditions, John P. Draper, Trisha B. Atwood, Noelle G. Beckman, Karin M. Kettenring, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Members of the order Carnivora are a unique and important seed disperser who consume and deposit undamaged seeds while providing regular long-distance seed dispersal opportunities. Some members of Carnivora, such as coyotes (Canis latrans), are undergoing range expansions which may help the plant species they consume colonize new locations or replace dispersal services provided by recently extirpated species. In this study, we evaluated aspects of the seed dispersal effectiveness of coyotes and gut passage time to determine the potential dispersal distances for three commonly consumed and commonly occurring plant species (Amelanchier alnifolia, Celtis ehrenbergiana, and Juniperus osteosperma). We also investigated …

Nicarbazin As An Oral Contraceptive In Eared Doves, Lourdes Olivera, Silvia Pereyra, Georgget Banchero, Guillermo Tellechea, Jorge Sawchik, Michael L. Avery, Ethel Rodríguez

United States Department of Agriculture Wildlife Services: Staff Publications

Eared doves (Zenaida auriculata) are responsible for substantial losses in cereal and oil crops as well as in dairy and feedlot production in the southern cone of South America. Various strategies have been shown to be effective in reducing damage at the farm scale, but in some scenarios, it is necessary to also incorporate population control methods due to excessive bird population size. An alternative approach to reduce pest bird populations is the use of contraceptive methods, minimizing the impact on the environment and non-target populations. Nicarbazin is registered in the United States as a contraceptive for Branta …

Landscape Population And Evolutionary Genomics Of Several Closely Related Species Of Mallard-Like Ducks, Joshua Brown

Open Access Theses & Dissertations

Divergence and speciation proceed through three major evolutionary forces (i.e., selection, genetic drift, and gene flow) that are often spatially and temporally heterogeneous across the landscape. Moreover, these forces can have differing but subtle effects within the genomes of diverging taxa, and therefore, disentangling the effects of these evolutionary mechanisms throughout the speciation process can be challenging. Here, I use a recent species radiation, the mallard complex, to investigate how strong, yet varied, evolutionary pressures influence the speciation process. The mallard complex consists of 14 mallard-like waterfowl species around the world that have some of the highest rates of hybridization …

Big Fires, Big Trees, And Big Plots: Enhancing Our Ecological Understanding Of Fire With Unprecedented Field Data, Tucker J. Furniss

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wildfire is an inexorable process in western landscapes, posing a major challenge to land managers: how can we use fire to restore healthy forests without jeopardizing human communities? The purpose of this dissertation is to produce research that will help guide management and support effective wildland fire use in fire-prone forests.

I utilized a longitudinal dataset from a single, large forest plot that burned under serendipitous circumstances during the 2013 Rim Fire. My research revealed that post-fire mortality models under-predict mortality of large trees, and may need to be re-calibrated to perform well under future climates. I used satellite-derived data …

Susceptibility Of High-Elevation Forests To Mountain Pine Beetle (Dendroctonus Ponderosae Hopkins) Under Climate Change, David N. Soderberg

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Across western North America, pine forests are important for timber, wildlife habitat, and at high elevations are important for water retention and yield from rain and snowmelt. The mountain pine beetle (MPB) is one of the most significant disturbance agents shaping pine forests, and like all insects, temperature is a major driver of its population success and the dynamics of the landscapes that they inhabit. Changing temperature regimes can therefore directly influence MPB population persistence at a particular location, in addition to potential shifts in the range boundaries that they inhabit. MPB is currently expanding its range northward in British …

Climate-Driven Impacts Of Warming And Grazing On Sub-Arctic Coastal Wetlands In Alaska, Ryan T. Choi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Climate change is rapidly warming the Arctic, especially at lower latitudes. Warmer temperatures and earlier springs are altering the timing of plants and animals, especially for long-distance migratory herbivores. Changes in the timing of both plants and herbivores have the potential to impact plant productivity and nutrient cycling, while also altering plant community diversity and composition.

In chapter 2, I conducted a field experiment to investigate how earlier growing seasons and differences in arrival times of migratory geese influence physical traits of sedge forage species. I found that both an earlier growing season and late grazing by geese had similar …

Dietary Shifts Related To Water Availability And The Demographic Response To Changing Prey Abundance Of Carnivores In The West Desert, Utah, Ashley E. Hodge

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The decrease in number and range of North American large carnivores, has often all owed smaller carnivores ( < 15 kg) to fill the role of the top predator. This has favored some carnivores such as coyotes (Canis latrans), who have expanded their distribution. Other small carnivores such as kit foxes (Vulpes macrotis) have experienced a range shrinkage and their population status throughout the United States is a concern. Historically, western U.S. natural resource management agencies installed artificial water sources to assist desert wildlife, but some researchers believe the access to water allowed more coyotes to live in Utah’s West Desert. In the late-1980s, research proposed that without free drinking water, coyotes would have to triple …

Insights On Reticulate Evolution In Ferns, With Special Emphasis On The Genus Ceratopteris, Sylvia P. Kinosian

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The history of life is often viewed as a evenly branching tree; however, in reality it is more like a tangled hedgerow. Many groups of organisms are known to have such a net-like or reticulate evolutionary history, but it is particularly common in ferns and lycophytes (also known as pteridophytes). This dissertation investigates how net-like evolution affects different groups of ferns, with a special emphasis on the model species C-fern (Ceratopteris richardii, also called the antler or water sprite fern). Genomic data are utilized to under-stand hybridization, cryptic species and reticulate evolution in two groups of ferns. The …

Predator Defense And Host Selection Behavior Of Billbugs (Coleoptera: Dryophthoridae), Desireè M. Wickwar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Billbugs are a complex of weevils that feed on the roots of turfgrass, causing severe damage to the plants. These pests are traditionally managed with applications of insecticides. However, there is a need for non-chemical management tools. Here I investigate billbug behavior in relation to two potential avenues for more sustainable management: using resident predators to suppress billbugs (Chapter II) and selecting specific turfgrasses that resist billbug damage (Chapter III). In Chapter II, I investigate the effects of predator presence and cues associated with their presence on billbug behavior. Though resident predators contribute very little to billbug suppression through directly …

Using Bioenergetics To Model The Effects Of Climate Change On Bluntnose Minnows Pimephales Notatus In A Western Kentucky Stream, Christian Slone, Christian Slone

Student Scholarship & Creative Works

Bioenergetics considers a variety of factors like consumption, excretion, and metabolism to quantify the energy use of an organism. A common use of bioenergetics modeling is to help solve fish stock problems. This project looks to develop a bioenergetics model for Bluntnose Minnows Pimephales notatus to help predict effects of climate change on the biodiversity of western Kentucky streams. We used R and NetLogo to create an agent-based bioenergetics model to simulate the size distribution of Bluntnose Minnows under various temperature regimes. Bluntnose Minnow metabolism increases, and consumption decreases with an increase in water temperature. Fish growth seems to be …

Nocturnal Multi-Species Roosts Of Cicindelidae (Coleoptera) In A Neotropical Lowland Rainforest, Susan Kirmse, Jürgen Wiesner

Insecta Mundi

Tiger beetles (Coleoptera: Cicindelidae) are frequent predators on the forest floor of the Amazon rainforest. We report on five diurnal sympatric tiger beetle species belonging to the genera Odontocheila Laporte de Castelnau and Poecilochila Rivalier in a terra firme rainforest in South Venezuela. We observed adult beetles for a full year and monitored their nocturnal roosts along two forest paths during the rainy season in 1998. We found up to four species communally roosting on low vegetation along the paths during the night. Multi-species roosts were more often observed than conspecific communal roosts. Although the individual composition of the nocturnal …

A New Species Of Coomanius Fleutiaux, 1924 (Coleoptera: Eucnemidae: Macraulacinae: Nematodini) From Southeast Asia, Robert L. Otto

Insecta Mundi

A new species of false click beetle, Coomanius badius Otto (Coleoptera: Eucnemidae), is described from Sarawak, Malaysia. An identification key is provided for species of Coomanius Fleutiaux distributed in the Southeast Asian region. Images for each species are provided.

During the spring and summer of 2020, many new species were discovered during identifications of beetles loaned from BMNH and other collections. One is described here in the first of many planned papers covering these new discoveries. Additional insights within Eucnemidae from around the world are still bound to continue as new information comes to light during the course of ongoing …

Taxonomic Revision Of Cosmodela Duponti (Dejean), Cosmodela Barmanica (Gestro), New Status, And Cosmodela Indica (Fleutiaux), New Status (Coleoptera: Cicindelidae), Miroslav Klícha, Jürgen Wiesner

Insecta Mundi

Two subspecies of Cosmodela duponti (Dejean) (Coleoptera: Cicindelidae) are elevated to species rank: Cosmodela barmanica (Gestro) and C. indica (Fleutiaux). The lectotypes of all the above-mentioned species are designated as well. Short redescriptions of the three species are provided together with a key, and illustrations of their habitus.

Cicindela duponti was described by Dejean (1826: 419) from specimens collected at the type locality, a former colony of French Indochina (Cochin China), now southern Vietnam. Gestro (1893: 360) described Cicindela barmanica as a variety of C. duponti based on different (purpurescent) shades of the elytral lateral and sutural bands …

Empowering Hope-Based Climate Change Communication Techniques For The Gulf Of Maine, Aimee Bonanno, Megan Ennes, Jennifer A. Hoey, Emily Moberg, Sarah-Mae Nelson, Nette Pletcher, Richelle L. Tanner

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The Gulf of Maine is one of the fastest warming marine areas on the planet: The industries and creatures that call it home face an unprecedented shift in their interactions and existence. Scientists, policy makers, and practitioners often want to communicate to the public about the seriousness of the situation to encourage mitigation and adaptation. Many standard communication strategies that rely on fear and scientific authority alone—rather than comprehensive explanations that include solutions—can leave audiences feeling overwhelmed and disengaged, instead of hopeful and motivated to act. In this practice bridge, we showcase a social science research-based climate change communication “tool-kit” …

Phragmites Australis Dieback In The Mississippi River Delta: Chemical Profiles Of Soil Types And Restoration Potential, Herie Lee

LSU Master's Theses

Since 2016, there has been widespread dieback of P. australis in the Lower Mississippi River Delta (hereafter referred to as Lower MRD, which is defined as the Birds Foot Delta) with relatively little to no signs of recovery. The cause of the current dieback is not fully understood. This thesis explores P. australis with emphasis on chemical profile characterization of different soil types and its effects on plant growth and the potential for restoration in the Lower MRD.

In chapter 2, I characterized the chemical profiles of soils collected from healthy and dieback stands of Phragmites, and from newly …