Ecology and Evolutionary Biology Commons^™

Phylogeny Of The Australian Solanum Dioicum Group Using Seven Nuclear Genes: Testing Symon’S Fruit And Seed Dispersal Hypotheses., Christopher T. Martine, Ingrid E. Jordon-Thaden, Angela J. Mcdonnell, Jason T. Cantley, Daniel S. Hayes, Morgan D. Roche, Emma S. Frawley, Ian S. Gilman, David C. Tank

Faculty Journal Articles

The dioecious and andromonoecious Solanum taxa (the “S. dioicum group”) of the Australian Monsoon Tropics have been the subject of phylogenetic and taxonomic study for decades, yet much of their basic biology is still unknown. This is especially true for plant-animal interactions, including the influence of fruit form and calyx morphology on seed dispersal. We combine field/greenhouse observations and specimen-based study with phylogenetic analysis of seven nuclear regions obtained via a microfluidic PCR-based enrichment strategy and high-throughput sequencing, and present the first species-tree hypothesis for the S. dioicum group. Our results suggest that epizoochorous trample burr seed …

A Polyphasic Approach In Understanding Green Algal Ecology, Blia Lor

Biology Theses

Pithophora and Cladophora are two representative genera of the order Cladophorales as filamentous Chlorophyta. These two genera are major contributors to the total algal biomass of littoral communities in freshwater and shallow marine water and have been reported as nuisance algae as they proliferate fast with the influx of nutrients. However, the wide geographical distribution and the overlap of plastic morphological characteristics between the two genera have complicated taxonomic identification at species level and phylogenetic studies. In the present study, a population of a monospecific, filamentous algal community was collected in Jewell, Georgia from the Ogeechee River. The monospecific, filamentous …

Plant Community Responses To Stand‐Level Nutrient Fertilization In A Secondary Tropical Dry Forest, Bonnie G. Waring, Daniel Pérez-Aviles, Jessica G. Murray, Jennifer S. Powers

Ecology Center Publications

The size of the terrestrial carbon (C) sink is mediated by the availability of nutrients that limit plant growth. However, nutrient controls on primary productivity are poorly understood in the geographically extensive yet understudied tropical dry forest biome. To examine how nutrients influence above‐ and belowground biomass production in a secondary, seasonally dry tropical forest, we conducted a replicated, fully factorial nitrogen (N) and phosphorus (P) fertilization experiment at the stand scale in Guanacaste, Costa Rica. The production of leaves, wood, and fine roots was monitored through time; root colonization by mycorrhizal fungi and the abundance of N‐fixing root nodules …

Evolution Of Endurance Running Genes Across Primates, Natalia T. Grube

Theses and Dissertations

The endurance running hypothesis has emerged as a key idea to explain several unique anatomical, physiological, and genetic features of modern humans—among these features is the evolution of ACTN3 (Bramble & Lieberman 2004, Nature), a gene linked to human athletic performance. An additional gene linked to human endurance performance is ACE. Because endurance running is a uniquely human trait, I predicted that ACE and ACTN3 genes would be evolving adaptively in the human lineage when examined in a wider primatological framework. To test this I compiled ACE and ACTN3 genes from 14 primate species and phylogenetically tested if these genes …

Age Status Effects On Female Silk Production And Male Courtship Response In Dolomedes Scriptus, Joseph Osborne

Student Scholar Showcase

Female Dolomedes scriptus, the striped fishing spider, serve as model organisms exhibiting pheromone production as a means of chemical signaling. Previous work has shown that male fishing spiders are responsive to female silk, and preferentially court in the presence of silk from mature virgins. In our research, we hypothesized that mature females produced larger quantities of silk than penultimate females in an attempt to elicit greater male mating response. Female spiders of both age statuses were kept for two days in a gridded tank. Sub-sampling of silk lines that crossed a random portion of the grid produced results signifying …

Co-Occurrence Of Manganese Oxidase Genes Indicates Lateral Transfer Between Classes Of Proteobacteria, Jacob Olichney

Student Scholar Showcase

Pseudomonas putida GB-1 is a model organism for the study of manganese oxidation in bacteria, however, the frequency of co-localization of multiple known and suspected manganese oxidizing proteins, as well as their occurrence between species, is unknown. Eight different genes isolated from known manganese oxidizing bacteria (MnxG, MopA, McoA, PputGB1_2552, PputGB1_2553, MoxA, MofA, and Bacillus MnxG) were tested individually using BioPython and BLAST (Basic Local Alignment Search Tool) on multiple genomic databases. BLAST searches had an expect value cutoff of 1e-50, limiting gene homologs to those with high sequence similarity. The abundance of homologous genes across classes of proteobacteria point …

Identification Of Bird-Associated Nonpoint Sources Of Microbial Contamination In Sediments, Savannah D. Mullins

Honors College Theses

Fecal indicator bacteria (FIB), such as Enterococci, are commonly used to monitor the microbial contamination of recreational beach waters based on standards set by the United States Environmental Protection Agency. Sediment and sand may also harbor FIB and reintroduce these bacteria to the water column. Enterococci may be originated from various non-point sources such as humans and wildlife. Recent literature has shown that avian feces also harbor high concentrations of Enterococci. The purpose of this study is identify the relationship between Enterococci and avian-associated markers in sediments. Sediment samples were collected monthly from four sites at Kings Ferry Beach in …

Comparing Feeding Accuracy Between High And Low Predation Trinidad Guppies, Lydia J. Bonnell

Honors College Theses

Efficient feeding accuracy could increase an organism’s survival. Although local adaptation in Trinidad guppies is common, the effects on accuracy are unknown. Guppies were wild caught in 2015 and 2017, filmed while capturing prey. Accuracy wasn’t different within samples but differed across samples, possibly due to the prey types used.

Livestock At Marala Head, Zahid Bhatti, Fakhra Nazir, Jibran Haider

Journal of Bioresource Management

Pakistan possesses the most varied and widely distributed network of wetlands. The study area spanned across Kikar post to head Marala at river Jammu Tawi from Kalyal to head Marala at river Chenab and from Rangpur Kuri to head Marala at river Manawar Tawi. Total count of the livestock (resting grazing) population was taken during each calendar month of the year, i.e., from October, 2000 to September 2001. The results of the survey confirmed the presence of 6 common species of livestock i.e. sheep, goat, buffaloes, cows, donkeys and horses in the study area in different sizes of populations.

Prevalence Of Flying Squirrels Recorded From Selected Areas Of Ajk, Jibran Haider, Madeeha Manzoor, Inayatullah Malik

Journal of Bioresource Management

Squirrels belong to the Sciuridae family. This family comprises of small and medium-sized rodents. They are native in regions of US, Eurasia, and Africa. Different nature parks were selected for survey. Dhirkot Nature Reserve (DNR) was observed in February, 2008, Banjosa Nature Reserve (BNR) in May to June, 2009), Tolipir National Park (TNP) in April to May, 2008, Pir Chanasi National Park (PCNP) in April to May, 2010 and Pir Lasura National Park (PLNP) in June to July, 2009. Only two species from the family Sciuridae were found in the study area; Hylopetes fimbriatus (Small Kashmir flying squirrel) and …

The Physico-Chemical Environment And Aquatic Biodiversity Of Head Marala Wetland During 2000-2001, Zahid Bhatti, Muhammad Asif Gondal, Andleeb Batool

Journal of Bioresource Management

An ecological study on Head Marala Wetland was undertaken. The study will help in providing sound basis for the future conservation activities and its management, on sounder footing. The Marala wetlands in Bajwat area included river Jammu Tawi, river Chanab and river Manawar Tawi were studied for a period of one year, i.e. from October, 2000 to September, 2001. In this study, 36 Phytoplanktons belonging to six families were observed. The other aquatic fauna observed included 14 species of fish, 2 turtles, one leech, one prawn, one shrimp and one bullfrog. The results showed that physico-chemical parameters had an impact …

Board Invited Review: Prospects For Improving Management Of Animal Disease Introductions Using Disease-Dynamic Models, Ryan S. Miller, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Management and policy decisions are continually made to mitigate disease introductions in animal populations despite often limited surveillance data or knowledge of disease transmission processes. Science-based management is broadly recognized as leading to more effective decisions yet application of models to actively guide disease surveillance and mitigate risks remains limited. Disease-dynamic models are an efficient method of providing information for management decisions because of their ability to integrate and evaluate multiple, complex processes simultaneously while accounting for uncertainty common in animal diseases. Here we review disease introduction pathways and transmission processes crucial for informing disease management and models at the …

Building A Better Batture: A Regional Recreational Enhancement Around The Morganza To The Gulf Levee, Taylor N. Fehmel

LSU Master's Theses

Twenty-five years ago, the existing flood protection levees along the Louisiana coastline were removed and construction was started by Terrebonne Levee and Conservation District on a new project called ‘Morganza to the Gulf’ or MTG. This project was undertaken to construct a new flood protection levee system around Louisiana in the communities in Terrebonne and Lafourche Parish. The MTG Levee is one of the first coastal projects in Louisiana to incorporate a risk-based analysis for a double levee system containing both local parish drainage levees and future storm surge levees of MTG. It was designed to protect approximately 250,000 people …

Index

Bulletin of the University of Nebraska State Museum (1924–2023)

No abstract provided.

Chlorophyll A And Primary Production Dynamics In Kentucky Lake: 2009-2018, Morgan Franklin

Scholars Week

Chlorophyll α (chl α) can be used as a proxy for phytoplankton biomass, while primary productivity (PP), the rate at which carbon is fixed into phytoplankton cells, is an indicator of how quickly carbon is turned over within the phytoplankton community. The purpose of this research was to examine the spatial distribution of chl α seasonally in Kentucky Lake and to examine the relationship between chl α and PP in two embayments of contrasting land use. The two sites analyzed are Ledbetter and Panther embayments. Data analysis showed that the chl α and PP were highly correlated; r=0.45 in Ledbetter …

The Piping Plover Problem: A Review Of Management Issues For A Threatened Shorebird, Andrew Lydeard, Gerry Harris

Scholars Week

Andrew Lydeard and Gerry Harris

The Piping Plover (Charadrius melodus) was federally listed in 1986. Since listing, Piping Plovers have been a focus of conservation and management efforts, particularly on their breeding grounds in the Northern Great Plains, Great Lakes, and northern Atlantic Coast. Despite management efforts that have resulted in range-wide population growth of the Piping Plover, growth in individual populations is often slow and reasons for this are poorly understood. A bias towards understanding drivers of declines on breeding sites compared to wintering and migratory stopover sites may be an underlying cause of this lack of …

Documenting Evolution: Comparing And Contrasting Late Mesozoic And Late Cenozoic Molluscan Patterns, Joshua Slattery

USF Tampa Graduate Theses and Dissertations

Despite major advances, evolutionary theory still has numerous shortcomings in terms of fully understanding the controls on speciation and diversification. A major factor limiting our knowledge is how biology and paleobiology view speciation from separate micro- and macro-evolutionary perspectives, respectively. Biologists typically examine microevolutionary changes within species from various biogeographic, behavioral, morphological, and genetic perspectives, which contrasts to the macroevolutionary approach of most paleobiologists, who have examined the same phenomena at larger scales but with the standpoint of time, have also concentrated on aspects of global or regional diversification (e.g., richness, origination rates, and extinction rates) over the long-term. Noticeably …

Identifying Roadkill Hotspots Using A Running Average, Kori A. Ogletree, Alfred J. Mead, Evan R. Boitet

Georgia Journal of Science

The identification of roadkill hotspots is necessary prior to the consideration of wildlife road mortality mitigation measures. In a previous study, 178 roadkill specimens were tallied via a driving survey along 21.4 km (13.3 mi) on three connected roadways in Baldwin County, Georgia. Roadkill locations were recorded to the nearest 0.16 km (0.1 mi) using the vehicle odometer. In the current study, location data were used to generate three graphical displays of roadkill distribution: 1) a linear graph of roadkills per 0.16 km (0.1 mi) bin; 2) a linear graph of roadkills per 0.8 km (0.5 mi) bin; and 3) …

Quantifying Atlantic Sea Scallop (Placopecten Magellanicus) Larval Abundance Throughout Cape Elizabeth, Maine, Hannah Haskell, Britney Evangelista, Alex Loftis

Thinking Matters Symposium Archive

As markets for the Atlantic Sea scallop are growing, the need for sustainable and reliable harvesting methods such as aquaculture is more imperative than ever. Due to the difficulty of maintaining sea scallop hatcheries, scallop farmers typically collect larvae from the ocean and raise them until a marketable size on lease sites. In order to efficiently collect scallop larvae, being able to predict when the larvae are most abundant in the water column is crucial. The goal of our research was to learn when scallop larvae are most abundant in the water column and to determine if there is a …

Functional Feeding Groups Of Aquatic Macroinvertebrates On Natural And Artificial Leaves In Forested Stream Habitats In The Sebago Lake Land Reserve, Sam H. Matey, Kala Freytag Wistar

Thinking Matters Symposium Archive

We investigated preferential insect colonization of natural versus artificial leaves in forested streams to determine the impact of invertebrate-substrate associations on macroinvertebrate community composition and ecosystem nutrient cycling. We created 10 onion bags filled with natural maple leaves and 10 filled with artificial maple leaves, and placed 5 of each in two forested streams, one larger and one smaller, in the Sebago Lake Land Reserve in Standish, Maine. We identified the aquatic macroinvertebrates found on these samples after approximately one month to order-level and used Maine DEP biomonitoring data and functional feeding group taxonomies to classify macroinvertebrates by functional feeding …

Exploring The Effects Of Dam Removals On Zooplankton In Penobscot Estuary, Erin Bucci, Karen Wilson

Thinking Matters Symposium Archive

Estuaries provide many ecosystem services such as buffering the negative impacts of storms, offering recreation and commercial fishing opportunities, and they serve as a critical habitat corridor for migratory fish. In New England, estuarine habitats have been dramatically altered over the last 200 years due to dam construction; migratory fish such as Atlantic salmon and alewives have suffered. Recently, there have been several dam removal projects in Maine aimed to restore these populations – the largest of these efforts being the Penobscot River Restoration Project. In 2013, two dams were removed from the Penobscot River Estuary, opening more than 2,000 …

Habitat Ecology, Species Presense, And Public Perception Of Three Declining Bat Species In Southeastern Missouri, Amy Hammesfahr, Christine Rega-Brodsky, Kathryn Womack-Bulliner

Posters

The populations of three bat species, the Northern long-eared bat (Myotis septentrionalis), tricolored bat (Per­imyotis subflavus), and little brown bat (Myotis lucifugus), have declined in southeastern Missouri since the in­troduction of white-nose syndrome (WNS) in 2012. The current maternity habitat of the remaining populations in the counties of Shannon, Carter, and Reynolds are unknown. In order to provide protection and conservation for the species, it is critical that their maternity roosts be identified. To achieve these goals, we will incorporate bat survey tools such as acoustic surveys, acoustic lures, and mist netting within the three counties to determine spe­cies occupancy …

Speciation Rate Is Independent Of The Rate Of Evolution Of Morphological Size, Shape, And Absolute Morphological Specialization In A Large Clade Of Birds, Nicholas Crouch, Robert Ricklefs

Biology Department Faculty Works

Whether ecological differences between species evolve in parallel with lineage diversification is a fundamental issue in evolutionary biology. These processes might be connected if conditions that favor the proliferation of species, such as release from competitors, facilitate the evolution of novel ecological relationships. Despite this, phylogenetic studies do not consistently identify such a connection. Conversely, if higher diversity caused species to become increasingly specialized ecologically, then lineage diversification might become dissociated from ecological diversification. In this analysis, we ask whether the rate of lineage diversification in a large clade of birds is correlated with morphological specialization and with rates of …

Climate Change Impacts On Bird Communities Vary Throughout Cities In Kansas, Lindsey Williams, Christine Brodsky

Posters

It is important to study climate change’s impacts on biodiversity in order to find a solution before the effects on wildlife are irreversible. Our research objective for this project was to determine if climate change affected long-term bird trends in urban and rural areas throughout Kansas. Our hypothesis was that climate change will decrease bird abundance and species richness because altered climate patterns like storms, droughts, and heat waves, may cause a decrease in suitable habitat. We would expect these trends to be strongest in cities, due to the urban heat island effect. The methods used for this project included …

Climate And Lawn Management Interact To Control C4 Plant Distribution In Residential Lawns Across Seven U.S. Cities, Tara L. E. Trammell, Diane E. Pataki, Christopher J. Still, James R. Ehleringer, Meghan L. Avolio, Neil Bettez, Jeannine Cavender-Bares, Peter M. Groffman, Morgan Grove, Sharon J. Hall, James Heffernan, Sarah E. Hobbie, Kelli L. Larson, Jennifer L. Morse, Christopher Neill, Kristen C. Nelson, Jarlath O'Neil-Dunne, William D. Pearse, Et Al.

Ecology Center Publications

In natural grasslands, C₄ plant dominance increases with growing season temperatures and reflects distinct differences in plant growth rates and water use efficiencies of C₃ vs. C₄ photosynthetic pathways. However, in lawns, management decisions influence interactions between planted turfgrass and weed species, leading to some uncertainty about the degree of human vs. climatic controls on lawn species distributions. We measured herbaceous plant carbon isotope ratios (δ¹³C, index of C₃/C₄ relative abundance) and C₄ cover in residential lawns across seven U.S. cities to determine how climate, lawn plant management, or interactions between …

A Phylogenetic Analysis Of Bostrichoidea (Coleoptera) And Revisions Of The Southern African Spider Beetle Genera Meziomorphum And Eutaphroptinus (Ptinidae: Coleoptera), Olivia M. Gearner

Masters Theses & Specialist Projects

Proposals for the internal relationships and classification of the bostrichoids are currently poorly supported, and almost all are based on morphology alone. This study improves upon on previous phylogenetic analyses of the group by including more taxa using the standard genes for many phylogenetic analyses. Cytochrome C oxidase subunit 1 (CO1), 28S small subunit rRNA, and 16S small subunit rRNA mitochondrial genes were sequenced or obtained from Genbank, then analyzed using parsimony and Bayesian analyses. Topologies differed depending on genes used. A three gene tree and a two gene (28S and CO1) tree both supported relationships in which a basal …

Guided Alligator Tours Or Raccoon Schooling (Gators), Paul List

Senior Theses

In my two main internships during college, I worked closely with two very different animals: raccoons and alligators. Additionally, I gained experience in presenting educational programs during my internship at Fripp Island, where my most common program was our Gator Walk. For my thesis project, I built upon my experience in interpretive programming, drawing on my experience with alligators and raccoons to develop a unique educational program to present at Congaree National Park. This report will describe the process of developing this program as well as it’s implementation and outcomes. In addition, it includes a review of scholarly literature on …

Mammals Of The Northern Andes: An Analysis Of Camera Trap Data And Observation In Angochagua, Ecuador, Risa Berman

Independent Study Project (ISP) Collection

The high Andes of Ecuador are home to a diverse community of mammals, many of which are threatened. These include the Andean bear, Andean fox, puma, and mountain tapir. This study used camera traps, direct observation, and indirect observation over three weeks to monitor the wildlife in the mountains of the Parroquia of Angochagua. The five species observed during this period were Andean bear, Andean fox, dog, mountain paca, and mouse. While this short study did not completely survey the mammalian community of the area, it confirmed the presence, diet, sociality, temporal habits, elevational range, and habitat preferences of the …

Microhabitat Comparison Of Percina Roanoka (Roanoke Darter) And Percina Nevisense (Chainback Darter) In The Roanoke River, Dakota R. Spruill, Steven L. Powers

Virginia Journal of Science

Snorkel observations of Percina roanoka and P. nevisense in the Roanoke River during summer months were followed by measuring current velocity, water depth, and substrate diameter at points of occupation. A total of 89 observations of P. roanoka and 81 observations of P. nevisense were compared using two-sample T-tests. Percina roanoka inhabited faster, shallower water than P. nevisense with the former found in a mean flow of 0.318 m/s and depth of 31.53 cm and the latter in a mean flow of 0.17 m/s and depth of 55.6 cm. Mean diameter of substrate at points of occupation did not …

Pollinator Visitation Frequency Associated With Native And Non-Native Plants In A Mid-Atlantic Piedmont (Usa) Urban Garden, Nicholas J. Ruppel, Saunders M. Riley, Ellis D. Mumford, Barbara L. Swedo

Virginia Journal of Science

The recent focus on the importance of native plants and their pollinators has highlighted the critical role of local species in their natural environment. As urban encroachment, climate change, and invasive species continues to threaten native habitats, it is increasingly important to promote the use of local green spaces as refugia for native plants and their pollinators. The aim of this project, therefore, was to identify and assess the visitation frequency of insect pollinators associated with an urban setting within the Piedmont region of Virginia, and compare their association with native versus closely-related but non-native summer-flowering plants. Several modes of …