Ecology and Evolutionary Biology Commons^™

Worldwide Relationships In The Fern Genus Pteridium (Bracken) Based On Nuclear Genome Markers, Paul G. Wolf, Carol A. Rowe, Sylvia P. Kinosian, Joshua P. Der, Peter J. Lockhart, Lara D. Shepherd, Patricia A. Mclenachan, John A. Thomson

Ecology Center Publications

PREMISE: Spore-bearing plants are capable of dispersing very long distances. However, it is not known if gene flow can prevent genetic divergence in widely distributed taxa. Here we address this issue, and examine systematic relationships at a global geographic scale for the fern genus Pteridium.

METHODS: We sampled plants from 100 localities worldwide, and generated nucleotide data from four nuclear genes and two plastid regions. We also examined 2801 single nucleotide polymorphisms detected by a restriction site-associated DNA approach.

RESULTS: We found evidence for two distinct diploid species and two allotetraploids between them. The “northern” species (Pteridium aquilinum) has distinct …

Taxonomic Reassessment Of The Genera Lychas, Mesobuthus, And Olivierus, With Descriptions Of Four New Genera (Scorpiones: Buthidae), František Kovařík

Euscorpius

The diagnostic characters are reassessed and defined for the genera Lychas C. L. Koch, 1845, Mesobuthus Vachon, 1950, and Olivierus Farzanpay, 1987 (the latter is restored from synonymy with Mesobuthus). Four new genera are described: Aegaeobuthus gen. n. (type species Buthus gibbosus Brullé, 1832), Afrolychas gen. n. (type species Isometrus burdoi Simon, 1882), Janalychas gen. n. (type species Lychas srilankensis Lourenço, 1997), and Spelaeolychas gen. n. (type species Isometrus hosei Pocock, 1891). Type species are designated for subgenera Lychas (Distotrichus) Tikader & Bastawade, 1983 (type species Isometrus nigristernis Pocock, 1899), Lychas (Alterotrichus) Tikader & Bastawade, 1983 (type species Scorpio …

Seven New Alpine Species Of The Genus Alpiscorpius Gantenbein Et Al., 1999, Stat. N. (Scorpiones: Euscorpiidae), František Kovařík, Jana Štundlová, Victor Fet, František Šťáhlavský

Euscorpius

Two subgenera of Euscorpius Thorell, 1876 (Scorpiones: Euscorpiidae) are elevated to the genus status: Alpiscorpius Gantenbein et al., 1999, stat. n. and Tetratrichobothrius Birula, 1917, stat. n. Seven new Alpine scorpion species are described and illustrated: Alpiscorpius delta sp. n. (Italy) from the “alpha group” (“germanus complex”); A. kappa sp. n. (Slovenia) and A. lambda sp. n. (Slovenia) from the “germanus group” (“germanus complex”); A. omega sp. n. (Slovenia), A. omikron sp. n. (Slovenia), A. sigma sp. n. (Italy, Slovenia), and A. ypsilon sp. n. (Austria, Slovenia) …

Reorganization Of Surviving Mammal Communities After The End-Pleistocene Megafaunal Extinction, Anikó B. Tóth, S. Kathleen Lyons, W. Andrew Barr, Anna K. Behrensmeyer, Jessica L. Blois, René Bobe, Matt Davis, Andrew Du, Jussi T. Eronen, J. Tyler Faith, Danielle Fraser, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Joshua H. Miller, Silvia Pineda-Munoz, Laura C. Soul, Amelia Villaseñor, John Alroy

School of Biological Sciences: Faculty Publications

Large mammals are at high risk of extinction globally. To understand the consequences of their demise for community assembly, we tracked community structure through the end- Pleistocene megafaunal extinction in North America.We decomposed the effects of biotic and abiotic factors by analyzing co-occurrence within the mutual ranges of species pairs. Although shifting climate drove an increase in niche overlap, co-occurrence decreased, signaling shifts in biotic interactions. Furthermore, the effect of abiotic factors on cooccurrence remained constant over time while the effect of biotic factors decreased. Biotic factors apparently played a key role in continental-scale community assembly before the extinctions. Specifically, …

Fgf-Signaling Is Compartmentalized Within The Mesenchyme And Controls Proliferation During Salamander Limb Development, Sruthi Purushothaman, Ahmed Elewa, Ashley W. Seifert

Biology Faculty Publications

Although decades of studies have produced a generalized model for tetrapod limb development, urodeles deviate from anurans and amniotes in at least two key respects: their limbs exhibit preaxial skeletal differentiation and do not develop an apical ectodermal ridge (AER). Here, we investigated how Sonic hedgehog (Shh) and Fibroblast growth factor (Fgf) signaling regulate limb development in the axolotl. We found that Shh-expressing cells contributed to the most posterior digit, and that inhibiting Shh-signaling inhibited Fgf8 expression, anteroposterior patterning, and distal cell proliferation. In addition to lack of a morphological AER, we found that salamander …

Economic And Livestock Health Impacts Of Birds On Dairies: Evidence From A Survey Of Washington Dairy Operators, Julie L. Elser, Amber L. Adams Progar, Karen M.M. Steensma, Tyler P. Caskin, Susan R. Kerr, Stephanie A. Shwiff

United States Department of Agriculture Wildlife Services: Staff Publications

The survey described in this research paper aimed to investigate the economic and health impacts of birds on dairies. Birds are common pests on dairies, consuming and contaminating feed intended for cattle. As a result, dairy operators experience increased feed costs and increased pathogen and disease risk. We surveyed dairy operators attending the 2017 Washington Dairy Conference to examine the impact of birds on dairies in Washington State. Dairy operators reported feed losses valued at $55 per cow resulting in annual losses totaling $5.5 million in the Western region of the state and $9.2 million in the Eastern region of …

Plasticity Of Foot Muscle And Cardiac Thermal Limits In The Limpet Lottia Limatula From Locations With Differing Temperatures, Terrance Wang, Richelle L. Tanner, Eric J. Armstrong, David R. Lindberg, Jonathon H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Species distributions are shifting in response to increased habitat temperatures as a result of ongoing climate change. Understanding variation in physiological plasticity among species and populations is important for predicting these distribution shifts. Interspecific variation in intertidal ectotherms’ short-term thermal plasticity has been well established. However, intraspecific variation among populations from differing thermal habitats remains a question pertinent to understanding the effects of climate change on species’ ranges. In this study, we explored upper thermal tolerance limits and plasticity of those limits using a foot muscle metric and 2 cardiac metrics (Arrhenius breakpoint temperature, ABT, and flatline temperature, FLT) in …

Reconstructing Birth In Australopithecus Sediba, Natalie M. Laudicina, Frankee Rodriguez, Jeremy M. Desilva

Peer Reviewed Articles

Hominin birth mechanics have been examined and debated from limited and often fragmentary fossil pelvic material. Some have proposed that birth in the early hominin genus Australopithecus was relatively easy and ape-like, while others have argued for a more complex, human-like birth mechanism in australopiths. Still others have hypothesized a unique birth mechanism, with no known modern equivalent. Preliminary work on the pelvis of the recently discovered 1.98 million-year-old hominin Australopithecus sediba found it to possess a unique combination of Homo and Australopithecus-like features. Here, we create a composite pelvis of Australopithecus sediba to reconstruct the birth process in …

Double-Crested Cormorant Colony Effects On Soil Chemistry, Vegetation Structure And Avian Diversity, Leah Moran Veum, Brian S. Dorr, Katie C. Hanson-Dorr, R.J. Moore, Scott A. Rush

United States Department of Agriculture Wildlife Services: Staff Publications

Effects of Double-crested Cormorants (Phalacrocorax auritus) on vegetation, soil chemistry and tree health have been documented from their breeding colonies in the northern breeding grounds of Canada and the United States (U.S.) but not for areas within the southeastern United States where breeding activity is relatively novel. We compared vegetation and tree metrics such as structure diversity, and soil chemistry among colony islands, uninhabited islands, and abandoned colony islands within Guntersville Reservoir, a temperate forest ecosystem. Avian diversity and community structure were also quantified on these islands. Concentrations of potassium (K), phosphorus (P) and nitrate (NO3 −) in soil were …

Marine Plastic Pollution Afs 488g, Michael Cerbo

Library Impact Statements

No abstract provided.

Marine Plastic Pollution Afs 488x, Michael Cerbo

Library Impact Statements

No abstract provided.

Fall And Winter Roosting Ecology Of Southeastern Myotis And Rafinesque's Big-Eared Bats In The Cache River National Wildlife Refuge, Stacy Jae Scherman

Student Theses and Dissertations

Tree roosts in bottomland forests are critical resources required year-round for Rafinesque’s big-eared bats (Corynorhinus rafinesquii; CORA) and Southeastern myotis (Myotis austroriparius; MYAU). I characterized their roost selection and activity patterns in fall and winter in Cache River National Wildlife Refuge, Arkansas. In October-December of 2016 and 2017, I radio-tracked 19 CORAs and 14 MYAUs to 33 and 42 roost trees, respectively. Both species switched their roosting habits (e.g., MYAUs switched tree species and CORAs spent more time in roosts), but remained active when temperatures approached freezing. Additionally, CORA selected trees with large internal volume and diameter at breast height …

The Skiles Mummy: Care Of A Debilitated Hunter-Gatherer Evidenced By Coprolite Studies And Stable Isotopic Analysis Of Hair, Kirsten A. Verostick, Isabel Teixeira-Santos, Vaughn M. Bryant Jr., Karl Reinhard

Karl Reinhard Publications

The Skiles Mummy (SMM), a naturally mummified adult male from the late archaic period of Lower Pecos Canyonlands of South Texas, represents a unique case of care. SMM is an exceptional mummy within this region due to both the retention of a full head of hair, and having a diagnosed case of megacolon, a complication commonly associated with Chagas disease caused by Trypanosoma cruzi. Stable isotopic analysis of his hair is consistent with a diet incorporating of C₄/CAM plants with some C₃ plants, freshwater resources, and higher trophic level animals. However, the segments of hair most …

Modeling Spatially And Temporally Complex Range Dynamics When Detection Is Imperfect, Clark S. Rushing, J. Andrew Royle, David J. Zilkowski, Keith L. Pardieck

Ecology Center Publications

Species distributions are determined by the interaction of multiple biotic and abiotic factors, which produces complex spatial and temporal patterns of occurrence. As habitats and climate change due to anthropogenic activities, there is a need to develop species distribution models that can quantify these complex range dynamics. In this paper, we develop a dynamic occupancy model that uses a spatial generalized additive model to estimate non-linear spatial variation in occupancy not accounted for by environmental covariates. The model is flexible and can accommodate data from a range of sampling designs that provide information about both occupancy and detection probability. Output …

Risk Of Predation: A Critical Force Driving Habitat Quality Perception And Foraging Behavior Of Granivorous Birds In A Nigerian Forest Reserve, Umarfarooq A. Abdulwahab, Samuel Temidayo Osinubi, Jacinta Abalaka

Ecology Center Publications

Background: Understanding the factors that influence the foraging behavior and perception of habitat quality by animals has long been the focus in ecology. Due to the direct effect resource acquisition has on an individual’s fitness and species’ survival, predation risk is considered widely to be a major driver of foraging decision. The objectives of this study were to investigate how predation risk is perceived by granivorous bird species with respect to different habitat and microhabitat types, time of day and food types in Amurum Forest Reserve, Nigeria, with a view to direct future conservation planning.

Methods: For 3 months, we …

Diversity And Abundance Of Soil Microbes Differ Along A Forest-Pasture Transect, Hannah Suli, Ashley Schumann, Cleo Bickley, Jasmine Rodriguez

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Responses Of Bouteloua Eriopoda And Soil Stability To Precipitation Extremes In Chihuahuan Desert Grassland, Laura Kay Sadorf

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Evaluating The Effect Of Time Of Day On Singing Behavior In Anna’S Hummingbirds, Adrian D. Macedo, Maxine R. Mota

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Bourbon Virus In Wild And Domestic Animals, Missouri, Usa, 2012–2013, Katelin C. Jackson, Thomas Gidlewski, J. Jeffrey Root, Angela M. Bosco-Lauth, R. Ryan Lash, Jessica R. Harmon, Aaron C. Brault, Nicholas A. Panella, William L. Nicholson, Nicholas Komar

United States Department of Agriculture Wildlife Services: Staff Publications

Bourbon virus (BRBV) was first isolated from a febrile patient with a history of tick bites in Bourbon County, Kansas, USA; the patient later died from severe illness in 2014 (1). Several additional human BRBV infections were reported subsequently from the midwestern and southern United States (2). BRBV belongs to the family Orthomyxoviridae, genus Thogotovirus, which is distributed worldwide and includes Araguari, Aransas Bay, Dhori, Jos, Thogoto, and Upolu viruses (1,3). Thogoto and Dhori viruses have been associated with human disease (4–6). Viruses within the genus Thogotovirus have been associated with hard or soft ticks (7). Recent studies suggest that …

Measuring Streambank Erosion: A Comparison Of Erosion Pins, Total Station, And Terrestrial Laser Scanner, Daniel T. L. Myers, Richard R. Rediske, James N. Mcnair

Open Access Publishing Support Funded Articles

Streambank erosion is diffcult to quantify; models and field methods are needed to assess this important sediment source to streams. Our objectives were to (1) evaluate and compare three techniques for quantifying streambank erosion: erosion pins, total station, and laser scanning, (2) spatially assess streambank erosion rates in the Indian Mill Creek watershed of Michigan, USA, and (3) relate results with modeling of nonpoint source pollution. We found large absolute and relative errors between the different measurement techniques. However, we were unable to determine any statistically significant differences between techniques and only observed a correlation between total station and laser …

New Wilson’S Phalarope Nesting Record From The Central Platte River Valley, Mormon Island, Hall County, Nebraska, Andrew J. Caven, Bethany L. Ostrom, Aurora Fowler, Joshua D. Wiese, Kelsey C. King

Nebraska Bird Review

The southeastern portion of the Wilson’s Phalarope’s (Phalaropus tricolor) breeding range encompasses parts of Nebraska (Colwell and Jehl 1994), including the Sandhills and northern Panhandle (Silcock and Jorgensen 2018). Additionally, there have been a number of breeding records from southcentral and southeastern Nebraska within the Rainwater Basin ecoregion since the mid-1990s (Mollhoff 2016, Silcock and Jorgensen 2018). However, there is very little evidence of regular breeding activity in the nearby Central Platte River Valley (CPRV), which spans from Chapman west to Overton, Nebraska, and is considered a globally important area for waterbirds (Johnsgard and Brown 2013, Silcock and Jorgensen 2018). …

Pleasantview Hills Aspen Stand Diversity Project: Environmental Assessment, Pocatello Field Office

Aspen Bibliography

The Bureau of Land Management (BLM) Pocatello Field Office (PFO) has prepared this Environmental Assessment (EA) to analyze the environmental impacts of implementing treatments on aspen stands in the Pleasantview Hills area. This EA discloses the direct, indirect, and cumulative environmental effects that would result from implementation of this proposal as required by the National Environmental Policy Act (NEPA) of 1969. This EA will determine whether to prepare an Environmental Impact Statement (EIS) or a Finding of No Significant Impact (FONSI) based on environmental impact context and intensity, thereby informing agency decision making. Guidance for EA organization is determined by …

Information Resources For Animal Control And Wildlife Damage Management, Stephen M. Vantassel, Michael W. Fall, Serge Lariviére

Wildlife Damage Management Technical Series

A bumper sticker reads, “If you think education is expensive, you oughta try ignorance.” That statement could not be truer in regard to wildlife damage management. Being willing to learn is a critical attitude for everyone involved in wildlife damage management. Since wildlife damage management intersects so many other disciplines, no single person can be an expert in all of them. In addition, the arrival of an invasive species, changes in building practices (e.g., egress windows, ridge vents), or the implementation of new regulations can confound traditional practices and require new control methods. Thus, it is important to provide a …

Predicting Functional Responses In Agro-Ecosystems From Animal Movement Data To Improve Management Of Invasive Pests, Mark Q. Wilber, Sarah M. Chinn, James C. Beasley, Raoul K. Bourghton, Ryan K. Brooks, Stephen S. Ditchkoff, Justin W. Fischer, Steve B. Hartley, Lindsey K. Holmstrom, John C. Kilgo, Jesse S. Lewis, Ryan S. Miller, Nathan P. Snow, Kurt C. Vercauteren, Samantha M. Wisely, Colleen T. Webb, Kim M. Peen

United States Department of Agriculture Wildlife Services: Staff Publications

Functional responses describe how changing resource availability affects consumer resource use, thus providing a mechanistic approach to prediction of the invasibility and potential damage of invasive alien species (IAS). However, functional responses can be context dependent, varying with resource characteristics and availability, consumer attributes, and environmental variables. Identifying context dependencies can allow invasion and damage risk to be predicted across different ecoregions. Understanding how ecological factors shape the functional response in agro-ecosystems can improve predictions of hotspots of highest impact and inform strategies to mitigate damage across locations with varying crop types and availability. We linked heterogeneous movement data across …

Multi-Scale Predictors Of Parasite Risk In Wild Male Savanna Baboons (Papio Cynocephalus), Bobby Habig, David A.W.A.M. Jansen, Mercy Y. Akinyi, Laurence R. Gesquiere, Susan C. Alberts, Elizabeth A. Archie

Publications and Research

Several factors are thought to shape male parasite risk in polygynous and polygynandrous mammals, including male-male competition, investment in potentially immunosuppressive hormones, and dispersal. Parasitism is also driven by processes occurring at larger scales, including host social groups and populations. To date, studies that test parasite-related costs of male behavior at all three scales—individual hosts, social groups, and the host population—remain rare. To fill this gap, we investigated multi-scale predictors of helminth parasitism in 97 male savanna baboons (Papio cynocephalus) living in the Amboseli ecosystem in Kenya over a 5-year span. Controlling for multi-scale processes, we found that many of …

Geographic Population Structure And Taxonomic Identity Of Rhinichthys Osculus, The Santa Ana Speckled Dace, As Elucidated By Nuclear Dna Intron Sequencing, Liane Raynette Greaver

Electronic Theses, Projects, and Dissertations

Rhinichthys osculus (Cyprinidae), the speckled dace, is the most widely distributed freshwater fish in the western United States. The southern California populations of R. osculus are identified as the Santa Ana speckled dace (SASD), though the SASD has not yet been formally recognized as a distinct taxon. Current mtDNA analysis performed in the Metcalf Lab has shown a reciprocally monophyletic relationship among three California regions; southern, central coast, and Owens Valley. Similarly, microsatellite genotyping has shown significant levels of geographic population structure. The purpose of this study was to provide nuclear DNA sequence data to determine the taxonomic status of …

Thermal Cues Drive Plasticity Of Desiccation Resistance In Montane Salamanders With Implications For Climate Change, Eric A. Riddell, Emma Y. Roback, Christina E. Wells, Kelly R. Zamudio, Michael W. Sears

Publications

Organisms rely upon external cues to avoid detrimental conditions during environmental change. Rapid water loss, or desiccation, is a universal threat for terrestrial plants and animals, especially under climate change, but the cues that facilitate plastic responses to avoid desiccation are unclear. We integrate acclimation experiments with gene expression analyses to identify the cues that regulate resistance to water loss at the physiological and regulatory level in a montane salamander (Plethodon metcalfi). Here we show that temperature is an important cue for developing a desiccation-resistant phenotype and might act as a reliable cue for organisms across the globe. …

Isolation Of Caldatribacterium (Op9) And Investigation Of Its Potential Interactions With A Novel, Co-Cultivated Thermodesulfobacterium Species, Toshio Alvarado

Electronic Theses, Projects, and Dissertations

Atribacteria (OP9), candidate phylum with no representatives in pure culture, is found in various anaerobic environments worldwide. “Caldatribacterium”, a lineage within Atribacteria that is predicted to be a strictly anaerobic sugar fermenter based on cultivation-independent genomic analyses, is currently being maintained in lab enrichment cultures with fucose as its sole growth substrate. Metagenomics and 16S rRNA gene tag sequencing indicated that the fucose culture was a co-culture of “Caldatribacterium” and an uncultivated member of the genus Thermodesulfobacterium. Due to failed attempts to isolate “Caldatribacterium” by dilution-to-extinction and plating, it was hypothesized that “Caldatribacterium” is dependent in some way on the …

Using Single-Cell Sorting, Fish And 13c-Labeling To Cultivate And Assess Carbon Substrate Utilization Of ‘Aigarchaeota’ And Other Novel Thermophiles, Damon Kurtis Mosier

Electronic Theses, Projects, and Dissertations

‘Aigarchaeota’, a deeply branching lineage in the domain Archaea with no cultivated representatives, includes both thermophilic and hyperthermophilic microorganisms that reside in terrestrial and marine geothermal environments. The ‘Aigarchaeota’ consists of at least nine proposed genus-level groups that have been confirmed via 16S rRNA sequencing, with ‘Aigarchaeota’ Group 1 (AigG1) being the focus of this study. Based on cultivation-independent genomic data available from several AigG1 members in Great Boiling Spring (GBS), NV, and Yellowstone National Park, 22 different types of growth media were designed and tested for their ability to support growth of AigG1. One of these cultures, G1-10, was …

Systematics Of Carex Section Laxiflorae (Cyperaceae), Jenna Dorey

Dissertations, Theses, and Capstone Projects

Carex, with more than 2100 species, is the most species-rich genus of flowering plants in temperate regions of the world. Members of the family Cyperaceae are colloquially known as sedges, and members of the genus Carex are called “true sedges.” Carex occur on every continent except for Antarctica, they thrive in a panoply of habitats, and are ecologically important as a forage source for wildlife, carbon sequestration, prevention of soil erosion, and providing habitat for fresh water invertebrates. Despite their importance many sedges are still poorly known, such as the woodland sedges in Carex section Laxiflorae, which is …