Ecology and Evolutionary Biology Commons^™

Oyster Reef Restoration: Impacts On Infaunal Communities In A Shallow Water Estuary, Katherine P. Harris

Honors Undergraduate Theses

Oyster reefs are important estuarine ecosystems that provide habitat to many species including threatened and endangered wading birds and commercially important fishes and crabs. Infaunal organisms (i.e. small, aquatic animals that burrow in the sediment) are also supported by oyster reef habitats. Infaunal organisms are critical to marine food webs and are consumed by many important species that inhabit coastal estuaries. However, over the past century 85% of shellfish reef habitats have been lost, making restoration of these areas vital. Due to their important role in coastal food webs, infauna is hypothesized to be a strong indicator of habitat productivity …

Altered Spring Phenology Of North American Freshwater Turtles And The Importance Of Representative Populations, Fredric J. Janzen, Luke A. Hoekstra, Ronald J. Brooks, David M. Carroll, J Whitfield Gibbons, Judith L. Greene, John B. Iverson, Jacqueline D. Litzgus, Edwin D. Michael, Steven G. Parren, Willem M. Roosenburg, Gabriel F. Strain, John K. Tucker, Gordon R. Ultsch

Faculty & Staff Scholarship

Globally, populations of diverse taxa have altered phenology in response to climate change. However, most research has focused on a single population of a given taxon, which may be unrepresentative for comparative analyses, and few long-term studies of phenology in ectothermic amniotes have been published. We test for climate- altered phenology using long-term studies (10–36 years) of nesting behavior in 14 populations representing six genera of freshwater turtles (Chelydra, Chrysemys, Kinosternon, Malaclemys, Sternotherus, and Trachemys). Nesting season initiation oc- curs earlier in more recent years, with 11 of the populations advancing phenology. The onset of nesting for nearly all populations …

Initial Assessment And Effects Of Snake Fungal Disease On Populations Of Snakes In Kentucky, Jennifer Mckenzie

Theses and Dissertations--Forestry and Natural Resources

Pathogenic fungi are increasingly associated with epidemics in wildlife populations and represent a significant threat to global biodiversity. Snake fungal disease is an emerging disease caused by the fungus, Ophidiomyces ophiodiicola, and appears to be widespread in the eastern United States. Yet an evaluation of field diagnostics, and an understanding of the population-level consequences of the disease, are lacking. First, I evaluated the use of clinical signs to predict the presence of O. ophiodiicola across season and snake habitat affiliation (aquatic or terrestrial) and I compared two sampling methods to see if collection method impacts PCR result. Overall, snakes with …

Diet And Space Use Of The Martial Eagle (Polemaetus Bellicosus) In The Maasai Mara Region Of Kenya, Richard Stratton Hatfield

Theses and Dissertations--Forestry and Natural Resources

The martial eagle (Polemaetus bellicosus) is a vulnerable species that is declining throughout large portions of its range. There is an urgent need to improve understanding of this species’ ecology to inform its conservation. I equipped 20 adult martial eagles with global positioning system backpack transmitters to characterize diet and space use of the species in the Maasai Mara region of Kenya. The resulting high-resolution transmitter data sets allowed for the rapid location of kills and provided a means to estimate home range size. From November 2016 to April 2018, 191 kills were identified from 206 kill location …

Improving Estuarine Water Quality In South Florida: A Quantitative Evaluation Of The Efficacy Of A Local Nutrient Ordinance, Kerstin Motsch

Theses and Dissertations

Degraded coastal water quality is a concern in Florida, in part due to nutrient enrichment of aquatic ecosystems causing eutrophication and excessive algal growth. In 2010, a fertilizer ordinance was enacted in Cape Coral located in Lee County Florida with the objective of reducing nutrient loads from local fertilizing practices in order to improve water quality within the city. In order to assess its efficacy, a before after control impact (BACI) design was implemented using Fort Lauderdale in Broward County Florida as a reference location. A total of twenty estuarine canal sampling locations were identified in both Lee and Broward …

Intraspecific Genetic Variation, Population Structure, And Performance Of The Invasive Aquatic Macrophyte Eurasian Watermilfoil (Myriophyllum Spicatum) In Waterbodies With And Without Histories Of Chemical Herbicide Treatment Across Michigan, Taylor Zallek

Dissertations, Master's Theses and Master's Reports

Populations of invasive species are often subjected to novel selective forces in the form of anthropogenic control agents in their introduced ranges. These control agents, applied unevenly among populations within a species’ new range, can send invasive populations on drastically different evolutionary and ecological trajectories. In these studies, we aimed to see if different histories of chemical herbicide treatment are differentially influencing the genetic diversity, structure, and performance of populations of invasive watermilfoil (Myriophyllum spicatum and M. spicatum x M. sibiricum hybrids) from waterbodies in the state of Michigan. We sampled ten waterbodies with different histories of herbicide treatment …

Literature Review: Analyzing The Reasons Behind The Long-Standing Debate Of Evolution And Religion In America, Michelle Kathryn Matchell

Honors Program Theses

Evolution has been a widely studied and debated topic for centuries. Since the days of Greek philosophy, humans have been curious about the diversity of life and how it arose to what we see today. Interest in evolution flourished during the days of Charles Darwin when he and Alfred Russel Wallace developed the concept of natural selection. Now, evolution is an integral part of many scientific studies, especially genetics, developmental biology, geology, behavior studies and social sciences. According to Muhammad Ashraf, evolution can be considered ‘the cornerstone of modern science’ (Ashraf, 2016). On what would have been Darwin’s 201st birthday, …

Photosynthetic Activity Under Low Light, Danijela Lonco

Williams Honors College, Honors Research Projects

Are bacteria capable of undergoing oxygenic photosynthesis under low-light conditions inside of caves? Inside of an Australian cave, Chlorophyll f was recently discovered. This chlorophyll pigment was found to demonstrate the capability for photosynthesis, suggesting that Chlorophyll f extends the spectrum of usable light needed for oxygenic photosynthesis (Lars, 2015). Due to the findings in this study, a team went to Carlsbad Caverns to see if there were any bacteria capable of undergoing oxygenic photosynthesis under low light.

Measured Soil Hydraulic Properties As Rzwqm2 Input To Simulate Soil Water Dynamics And Crop Evapotranspiration, Saadi Sattar Shahadha

Theses and Dissertations--Plant and Soil Sciences

Agricultural system models integrate many different processes that cannot all be measured in field experiments and help quantify soil water dynamics, crop evapotranspiration, and crop growth with high temporal resolution. Understanding soil water dynamics and crop evapotranspiration is essential to improve agricultural management of field crops. For example, the interaction between nitrogen application rate and water dynamics is not sufficiently understood. In most cases, model simulations deviate from field measurements, especially when model input parameters are indirectly and unspecifically derived. The extent to which measured soil hydraulic property inputs decrease the discrepancy between measured and simulated soil water status is …

Using Maximum Entropy To Model The Distribution Of An Endangered, Endemic Crayfish Cambarus Harti (Hobbs), James Kiourtsis

Theses and Dissertations

Cambarus harti is a state-listed endangered, endemic crayfish found only in three counties in mid-west Georgia. Several studies have attempted to characterize the biology and ecology of this crayfish, however data regarding the distribution of this rare, endemic crayfish remains limited. The International Union for Conservation of nature stated that in order to create an effective conservation plan, the known distribution must be expanded. Species distribution models are a cost-effective way to identify locations that have similar habitat characteristics to those with known populations. One species distribution model, Maximum Entropy (MaxEnt), is the preferred approach when modeling species, like C. …

A Description Of Nesting Behaviors, Including Factors Impacting Nest Site Selection, In Black‐And‐White Ruffed Lemurs (Varecia Variegata), Andrea L. Baden

Publications and Research

Nest site selection is at once fundamental to reproduction and a poorly understood component of many organisms’ reproductive investment. This study investigates the nesting behaviors of black-and-white ruffed lemurs, Varecia variegata, a litter-bearing primate from the southeastern rainforests of Madagascar. Using a combination of behavioral, geospatial, and demographic data, I test the hypotheses that environmental and social cues influence nest site selection and that these decisions ultimately impact maternal reproductive success. Gestating females built multiple large nests throughout their territories. Of these, females used only a fraction of the originally constructed nests, as well as several parking locations as infants …

Interacting Effects Of Urbanization And Coastal Gradients On Ant Thermal Responses, Robert Warren

Biology Faculty Datasets

Urban-to-rural gradients intersect with other, often unmeasured, environmental gradients that may influence or even supersede species responses. Here we use coastal-to-interior and urban-rural gradients to investigate woodland ant response (physiological thermal tolerance, community structure and spring phenology) to two overlapping thermal gradients, the Great Lakes (Erie and Ontario) and the Buffalo, NY urban center (USA). Woodland ant physiological and behavioral responses, and community responses, shifted along the coastal-to-interior and urban-rural gradients, but they were generally best explained by lake effects (though urban ants tolerated higher temperatures than rural ants). The relatively colder spring temperatures in coastal areas (as compared to …

Evaluation Of The Phylogenetic Relationships Of The Marine Rivulariaceae., Jose Alberto Martinez Yerena

Masters Theses

Historically, the Rivulariaceae family has grouped all heteropolar, tapered and heterocitous Cyanobacteria, however recent description of multiple cyanobacterial populations with this morphotype using 16S rRNA phylogenies have reported that the populations with this morphotype are polyphyletic, and many new and old tapered and heteropolar genera (Cyanomargarita, Gloeothrichia, Rohoaltiella, etc.) have been classified and reclassified to different families than the Rivulariaceae. This is also the case of the main genera of the family (Rivularia and Calothrix), which have been repeatedly reported as polyphyletic, and whose separation to different families has been called for. In this project I carried out the evaluation …

Muskrats, James E. Miller

Wildlife Damage Management Technical Series

The muskrat (Ondatra zibethicus) is a common, semi-aquatic rodent native to the United States (Figure 1). It spends its life in aquatic habitats and is well adapted for swimming.

Although muskrats are an important part of native ecosystems, their burrowing and foraging activities can damage agricultural crops, native marshes and water control systems, such as aquaculture and farm ponds and levees. Such damage can significantly impact agricultural crops like rice that rely on consistent water levels for growth.

Muskrats also cause damage by eating agricultural crops, other vegetation, and crayfish, mussels and other aquaculture products. Loss of vegetation …

Wild Turkeys, James E. Miller

Wildlife Damage Management Technical Series

Like other bird and mammal species whose populations have been restored through conservation efforts, wild turkeys (Figure 1) are treasured by many recreationists and outdoor enthusiasts. Wild turkeys have responded positively to wildlife habitat and population management. In some areas, however, their increased populations have led to increased damage to property and agricultural crops, and threats to human health and safety. Turkeys frequent agricultural fields, pastures, vineyards and orchards, as well as some urban and suburban neighborhoods. Because of this, they may cause damage or mistakenly be blamed for damage. Research has found that despite increases in turkey numbers and …

Eastern Diamondback Rattlesnake (Crotalus Adamanteus) Telemetry Techniques And Translocation, Michael Thomas Jungen

Theses, Dissertations and Capstones

Internal implantation of radio-transmitters is the preferred attachment technique for snakes, but the high costs and invasive nature of the surgery make a functional alternative desirable. External radio-transmitters are cost-effective alternatives to surgical implantation. Rattlesnake rattles are unique morphological features that can serve as an attachment site for external radio-transmitters. Using thread and epoxy, I attached transmitters to the rattles of eastern diamondback rattlesnakes (Crotalus adamanteus; EDB). I calculated average monitoring duration using radio telemetry data collected from 49 adult EDBs telemetered from 2014 to 2017 in coastal South Carolina. On average, we monitored EDBs for 189 ±78 days with …

Seven New Taxa From The Butterfly Subtribe Euptychiina (Lepidoptera: Nymphalidae: Satyrinae) With Revisional Notes On Harjesia Forster, 1964 And Pseudeuptychia Forster, 1964, Shinichi Nakahara, Keith R. Willmott, Olaf H. H. Mielke, Johanna Schwartz, Thamara Zacca, Marianne Espeland, Gerardo Lamas

Insecta Mundi

Seven new euptychiine (Lepidoptera: Nymphalidae: Satyrinae) taxa are described and named herein, namely Harjesia argentata Nakahara, Zacca and Lamas, n. sp., Orotaygetis Nakahara and Zacca, n. gen., O. surui Nakahara, Zacca and Lamas, n. sp., Euptychoides sanmarcos Nakahara and Lamas, n. sp., Pseudeuptychia cuzquenya Nakahara and Lamas, n. sp., P. languida austrina Nakahara and Lamas, n. ssp., and Godartiana astronesthes Lamas and Nakahara, n. sp. A revisional note is provided for Harjesia Forster, 1964 and Pseudeuptychia Forster, 1964, and as a result, Taygetis vrazi Kheil, 1896 is removed from Harjesia and a new …

Nueva Especie De Aleuropleurocelus Drews Y Sampson (Hemiptera: Aleyrodidae) Y Clave Para Especies Del Grupo De Forma Oval, Oscar Ángel Sánchez-Flores, Vicente Emilio Carapia-Ruiz

Insecta Mundi

En este estudio se describe una nueva especie de mosca blanca Aleuropleurocelus chamaedoreaelegans Sánchez-Flores y Carapia-Ruiz sp. nov. (Hemiptera: Aleyrodidae) encontrada en el envés de las hojas de Chamaedorea elegans Mart. en el Estado de Puebla (México). Se proporcionan microfotografías de estructuras morfológicas de puparios, se discute la separación con otras especies cercanas de Aleuropleurocelus Drews y Sampson, y se propone una clave para especies del grupo de forma oval.

Paleoecological Investigation Of The Effect Of Rainbow Trout Predation On Zooplankton Body Size And Community Composition, Michael E. Gilray

Departmental Honors Projects

Stocking fish for sport may induce food web cascades that impact the trophic state of lakes. Here, the practice of stocking rainbow trout into a Twin Cities metropolitan area lake (Square Lake) was examined to see if changes have occurred in the lake’s zooplankton community that could explain its declining water quality. Rainbow trout are size-selective predators that consume large-bodied herbivorous zooplankton (i.e., Daphnia pulicaria) and therefore may cause decreased phytoplankton grazing pressure and more eutrophic conditions. A paleoecological study was performed that compared the sediment record of Square Lake to that of a reference lake (Big Carnelian Lake) that …

Dna Extraction And Microsatellite Amplification Of Daphnia Pulicaria Resting Eggs: Analysis Of Allele Frequencies Through Time, Anna Ries

Departmental Honors Projects

A paleoecological approach allows for the study of genetic change in populations over longer periods of time than would be possible if one were sampling populations from year to year. Daphnia and other cladoceran zooplankton are amenable to this type of study because they produce diapausing embryos (ephippial eggs) when they sexually reproduce, and these resting eggs can remain viable for decades to centuries in lake sediments. This study uses paleoecological methods as well as a new methodology for ephippial DNA extraction and amplification to assay for genetic variation in ephippial eggs obtained from sediments of varying ages from Square …

Investigating The Ecology Of A Rare Species On St. John, Usvi: Reintroducing Solanum Conocarpum In Light Of Climate Change, Cecilia Rogers

Senior Honors Projects, 2010-2019

Approximately two thirds of St. John is National Park territory. However, the land has been threatened with tourism and development, greatly impacting island biodiversity. One species that may become extinct due to this degradation is Solanum conocarpum. S. conocarpum is a rare shrub, endemic to the dry tropical forests of St. John, USVI. This plant is a species of conservation concern and is one of very few native and endemic plants on this island. Very little is known about the ecology and reproduction of S. conocarpum. Most plants are found on the southern half of the island. Recent observations …

New Applications Of Radio Frequency Identification Stations For Monitoring Fish Passage Through Headwater Road Crossings And Natural Reaches, Ian R. Macleod, Charles J. Gagen

Journal of the Arkansas Academy of Science

Within the Ouachita National Forest, roads and streams intersect each other thousands of times. Many of these road crossings alter stream hydrology and potentially limit longitudinal fish movement. To investigate the potential impacts of these road crossings on fish passage, we monitored movements of 3 native fish species (n = 2,171) individually tagged with radio frequency identification (RFID) tags in 2012 and 2013. We installed solar-powered RFID stations in 2 streams with road crossings and 2 reference streams without road crossings. Each of the 4 monitoring stations included a pair of antennas bracketing a road crossing (or similarly-sized natural reach) …

Update Of Distribution Of The Chestnut Lamprey In Arkansas, Jeremiah Salinger, Ronald L. Johnson, Brian Wagner

Journal of the Arkansas Academy of Science

Most lamprey species other than sea lampreys have been poorly studied in North America. The chestnut lamprey, Ichthyomyzon castaneus, has a distribution within the Mississippi River and Hudson Bay drainage systems, and the Great Lakes. Since the text Fishes of Arkansas was published in 1988, few papers have been published to update the statewide distribution of this lamprey. We incorporated our electrofishing sampling results with gray and published literature to describe the distribution of this species in the drainage basins of the State of Arkansas. Reported are records of 250 chestnut lamprey specimens, over a 90 year period, from …

Incidental Captures Of Plains Spotted Skunks (Spilogale Putorius Interrupta) By Arkansas Trappers, 2012-2017, D. Blake Sasse

Journal of the Arkansas Academy of Science

Arkansas trappers were surveyed following the 2012 and four subsequent trapping seasons regarding accidental captures of spotted skunks while attempting to trap other species. A total of 132 trappers reported capturing spotted skunks although further investigation confirmed the validity of only 42 reports from trappers that caught a total of 60 spotted skunks. Incidental captures were rare; only 0.35-1.29% of trappers each year caught spotted skunks and came primarily from the Ozark and Ouachita regions of the state.

Occupancy Of Stream-Associated Amphibians Within The Interstate 90 Snoqualmie Pass Corridor, Anne Gustafson

All Master's Theses

Detection of stream-associated amphibians in visual encounter surveys is challenging due to their cryptic nature; however, occupancy models were developed to deal with these detectability problems and provide estimates of occupancy that can also be related to site characteristics. Highway crossing risks and habitat isolation were mitigated for in recent construction of wildlife underpasses, where creeks cross Interstate 90 east of Snoqualmie Pass in Washington State. The effects of these restored underpasses on stream-associated amphibians were evaluated across 8 creeks, some with and some without restored underpasses, by comparing modeled occupancy of 3 amphibian species in stream habitat upstream, under, …

Use Of A Two-Action Paradigm Apparatus With Captive Lemurs: Insights Into Social Learning, Carly Batist

All Master's Theses

Lemurs have been understudied in cognitive research despite possessing a unique phylogenetic position as the lineage linking primates to other mammals. I used a two-action paradigm apparatus to test social learning abilities in seven lemur species at the Duke Lemur Center. There were three groups: push (had model previously taught to push), pull (had model previously taught to pull), and control (no model). I conducted experimental trials to determine if lemurs in push/pull groups learned faster and more efficiently from the model than lemurs in control groups who lacked a model to observe. I found evidence of social facilitation in …

Gorilla Life-Stage Comparison Of Head Orientation, Lisa Wilding

All Master's Theses

Staring by primates, as well as other species of animals, can be perceived as a threat and averting that gaze can minimize potential conflict. Given that gorillas are highly sexually dimorphic, they may use this staring and gaze aversion strategy more than physical contact. Due to the shape of the eye and the pigmented sclera in some primates, eye gaze can be difficult to determine, whereas, head orientation may be a more salient cue. The current study documents developmental differences among age-sex classes of captive western lowland gorillas (Gorilla gorilla gorilla) in six head orientation categories (Head Toward …

Life In The Dirt: Factors Influencing The Behavior And Distribution Of Spea Intermontana In Eastern Washington State, Corey Brumbaugh

All Master's Theses

I divided my thesis into two major studies focusing on the Great Basin Spadefoot Toad, Spea intermontana, at the Beverley Dunes (Beverley, WA). The first study explored the effects of temperature and water level on the rate of metamorphosis. We gathered data on rates of development, survival, body mass, snout-vent length, and hind leg length of metamorphs under 4 treatments: 20C x High Water, 30C x High Water, 20C x Water Loss, and 30C x Water Loss. These data show that temperature has a stronger effect on the overall rate of metamorphosis of Great Basin Spadefoot Toads. The second …

Small Mammal Microhabitat Use And Species Composition At A Wildlife Crossing Structure Compared With Nearby Forest, Lindsay Millward, Kristina Ernest

All Master's Theses

Expanding transportation corridors have fragmented ecosystems throughout the world, restricting the movement of organisms or acting as complete connectivity barriers. Wildlife crossing structures (WCS) can increase the permeability of roads, allowing animals to move safely between habitats. Small mammals are especially vulnerable to the effects of reduced connectivity because of their limited mobility; however, few studies have evaluated their use of WCS. This study was conducted at a WCS under I-90 near Snoqualmie Pass, Washington. Our objective was to evaluate the small mammal species composition at the wildlife undercrossing in comparison to adjacent restoration sites and to the nearby forest. …

Role Of Nest Site Microclimate And Food Availability In Chick Development And Reproductive Success In Black-Legged Kittiwakes (Rissa Tridactyla), Lindsay Mae Lacey

Honors Theses

Seabirds are marine top predators, and as such are often studied as bioindicators of climate shifts (Oswald and Arnold 2012). Though many studies have analyzed the effect of macroclimatic variation on marine prey species availability and thus seabirds, few have analyzed effects of microclimate - fine spatial patterns of climate (Mantua and Hare 2002; Hatch 2013; Kim and Monaghan 2005a). I tested the hypothesis that localized temperature and humidity at nest sites interact with food availability to alter black-legged kittiwake (Rissa tridactyla) nest site quality, chick body condition during growth and development, and reproductive parameters including Julian lay …