Ecology and Evolutionary Biology Commons^™

Quantifying Bat Detection Survey Methods And Activity Patterns, Tara C. Hohoff

Masters Theses

Bats have an astonishing diversity and provide vital ecosystem services in an array of different niches. In North America, most species of bats are insectivores and tend to be frequently overlooked for their important ecosystem role providing insect control. As bat populations have declined in recent years, farmers, land managers, conservationists, and bat enthusiasts have wondered what we can do to protect our local bat populations. As a first step, we need to develop methods that more effectively survey for rare species of bats. By performing inefficient surveys, we are doing a disservice to our funding agencies providing misinformation that …

Responses To Familiar And Unfamiliar Humans By Belugas (Delphinapterus Leucas), Bottlenose Dolphins (Tursiops Truncatus), & Pacific White-Sided Dolphins (Lagenorhynchus Obliquidens): A Replication And Extension, Heather M. Hill, Deirdre Yeater, Sarah Gallup, Sara Guarino, Steve Lacy, Tricia Dees, Stan A. Kuczaj Ii

Psychology Faculty Publications

Previous research has documented that cetaceans can discriminate between humans, but the process used to categorize humans still remains unclear. The goal of the present study was to replicate and extend previous work on the discrimination between familiar and unfamiliar humans by three species of cetaceans. The current study manipulated the familiarity and activity level of humans presented to 12 belugas (Delphinapterus leucas) housed between two facilities, five bottlenose dolphins (Tursiops truncatus), and six Pacific white-sided dolphins (Lagenorhynchus obliquidens) during free-swim conditions. Two measures of discrimination were coded from video recordings of each trial: …

An Examination Of Plant Community Composition In Six Carolina Bays On The Coastal Plain Of South Carolina, Katherine L. Altman-Goff

Electronic Theses and Dissertations

Historically high rates of human impact and recent Supreme Court cases, which have affected the regulation of geographically isolated wetlands in the United States, suggest that Carolina bays may be at high risk of human impacts in the future. Conservation efforts should be established based on applied ecological data and, if regulations by state and federal agencies are unable to conserve Carolina bay wetlands, it may be important to prioritize individual bays for preservation on protected lands. I examined plant community composition, diversity, richness, and rarity and soil parameters in six Carolina bays across South Carolina, using a replicated ecological …

Permanent Slides For Morphological Studies Of Small Crustaceans: Serban's Method And Its Variation Applied On Bathynellacea (Malacostraca), Giulia Perina, Ana I. Camacho

Research outputs 2014 to 2021

Morphological studies of small invertebrates often involve the preparation of slides to observe minute body parts under a compound microscope. Preparation should facilitate observation, through traditional optical microscopy, of small surface structures on different planes, like pores, spines and setae. Various methods and techniques, using different mounting media that specialists have adopted to observe and preserve small crustaceans, have their advantages and disadvantages.Within the order Bathynellacea, specimens in the family Bathynellidae are particularly challenging due to their small size (0.5 to 2.25 mm body length) and very delicate exoskeleton, which tends to be completely digested when using common clearing mounting …

Altitudinal Shifts Of The Native And Introduced Flora Of California In The Context Of 20th-Century Warming, A. Wolf, Naupaka B. Zimmerman, W. R. Anderegg, P. E. Busby, J. Christensen

Biology Faculty Publications

Aim: The differential responses of plant species to climate change are of great interest and grave concern for scientists and conservationists. One underexploited resource for better understanding these changes are the records held by herbaria. Using these records to assess the responses of different groups of species across the entire flora of California, we sought to quantify the magnitude of species elevational shifts, to measure differences in shifts among functional groups and between native and introduced species, and to evaluate whether these shifts were related to the conservation of thermal niches.

Location: California.

Methods: To characterize these shifts in California, …

Constructing A River, Building A Border: An Environmental History Of Irrigation, Water Law, State Formation, And The Rio Grande Rectification Project In The El Paso/Juárez Valley, Joanne Kropp

Open Access Theses & Dissertations

The Rio Grande in the El Paso, Texas, U.S./Juárez, Chihuahua, Mexico, Valley has a long history of human use from prehistoric to modern times. Formal irrigation began in the 1600s, mainly for viticulture, changing to cotton and pecans in the 1900s. The Rio Grande was subject to bed shifting and flooding that, after 1848, affected the location of the international boundary. During the Great Depression the U.S. and Mexican governments sponsored conservation projects to provide jobs and increase agricultural production. The 1933 “Convention - Rectification of the Rio Grande” was the culmination of interstate and bi-national agreements to divide Rio …

Comparing Process-Based And Constraint-Based Approaches For Modeling Macroecological Patterns, Xiao Xiao

Biology Faculty Publications

Ecological patterns arise from the interplay of many different processes, and yet the emergence of consistent phenomena across a diverse range of ecological systems suggests that many patterns may in part be determined by statistical or numerical constraints. Differentiating the extent to which patterns in a given system are determined statistically, and where it requires explicit ecological processes, has been difficult. We tackled this challenge by directly comparing models from a constraint-based theory, the Maximum Entropy Theory of Ecology (METE) and models from a process-based theory, the size-structured neutral theory (SSNT). Models from both theories were capable of characterizing the …

Clusters Of Alpha Satellite On Human Chromosome 21 Are Dispersed Far Onto The Short Arm And Lack Ancient Layers, William Ziccardi, Chongjian Zhao, Valery Shepelev, Lev Uralsky, Ivan Alexandrov, Tatyana Andreeva, Evgeny Rogaev, Christopher Bun, Emily Miller, Catherine Putonti, Jeffrey Doering

Bioinformatics Faculty Publications

Human alpha satellite (AS) sequence domains that currently function as centromeres are typically flanked by layers of evolutionarily older AS that presumably represent the remnants of earlier primate centromeres. Studies on several human chromosomes reveal that these older AS arrays are arranged in an age gradient, with the oldest arrays farthest from the functional centromere and arrays progressively closer to the centromere being progressively younger. The organization of AS on human chromosome 21 (HC21) has not been well-characterized. We have used newly available HC21 sequence data and an HC21p YAC map to determine the size, organization, and location of the …

Predicting Suitable Habitat Decline Of Midwestern United States Amphibians And Quantifying The Consequence Of Declines Using Pond-Breeding Salamanders, Brock Struecker

Master's Theses

With current declines of vertebrate taxa meeting or exceeding those of historic mass extinction events, there is a growing need to investigate the main drivers of declines. Amphibians are perhaps at greatest risk of global climate change and land-use changes than most other vertebrate classes and also have significant roles in ecosystem processes – combined, this creates a cause for concern. I designed a study that would investigate the effects of current and predicted climate change and land-use changes on amphibians using species distribution models and a field study to identify the potential consequences of amphibian species declines by investigating …

Aquatic Insect Community Structure And Secondary Production In Southcentral Alaska Streams With Contrasting Thermal And Hydrologic Regimes, Samantha D. Hertel

Master's Theses

Streams along the Copper River Delta, southcentral Alaska, exhibit contrasting thermal and hydrologic variability associated with being primarily groundwater-fed (GWF) or surface water-fed (SWF). Groundwater-fed streams are predictable both thermally and hydrologically year round, whereas SWF streams are unpredictable and exhibit more variable thermal and hydrologic regimes. These differences may strongly influence aquatic insect community structure and secondary production. Four streams, two GWF and two SWF, were sampled twice monthly from late April 2013 through August 2013 and once seasonally in fall (September) and early winter (November). Aquatic insect community structure differed markedly in both hydrologic types. Taxa richness was …

Early Round Goby (Neogobius Melanostomus) Invasion Into Lake Michigan Tributaries And Competitive Interactions With Two Native Benthic Fishes., Margaret Ann Malone

Master's Theses

The round goby is a prolific invasive species and is currently spreading into Great Lake tributary streams. There is a high potential for negative impacts on native benthic fishes in these stream habitats and the aim of this study is to assess the impacts of the round goby on two native darter species in particular (johnny darter and blackside darter). I review the history of round goby invasion in the Great Lakes and summarize hypotheses of the invasive characters of the round goby. Using game theory, I provide a G-function approach to understanding the outcomes of the round goby invasion …

Ship-Induced Depression Wakes And Shoreline Erosion, Luca Zaggia, Giuliano Lorenzetti, Georgia Manfe, Gian Marco Scarpaf, K. E. Parnell, John Rapaglia, E. Molinaroli

Biology Faculty Publications

Shoreline retreat as an effect of ship wakes was studied in a navigation channel of the industrial port of Venice, Italy: the Malamocco -Marghera Channel. The investigation revealed unprecedented erosion rates, up to 4 m y , that determined a total loss of about 1.2 million of m of soil in the period 1970 -2015. This interaction between navigation and the channel margins must be considered in order to understand the past evolution of the central Venice Lagoon and for a sustainable management of the port traffic in the future sea -level rise scenario.

Influence Of Historic Landscapes And Contemporary Species Management On Chesapeake Bay Bald Eagles And Osprey, Catherine B. Viverette

Theses and Dissertations

Influence of historic landscapes and contemporary species management on Chesapeake Bay Bald Eagles and Osprey

Catherine B. Viverette

Co-distributed species with well documented demographic histories can provide good models for testing alternative hypotheses about the impact of evolutionary history, contemporary landscapes, and species management on current distribution and population structure. The Osprey (Pandion haliaetus) and Bald Eagle (Haliaeetus leucocephalus) have been extensively studied, managed and monitored across their North American breeding range, particularly in the Chesapeake Bay. We used a combination of ecological niche modelling, diet reconstruction, and population genetic modeling to understand the role of …

The Curiosity Of Con, Petrified Breath, And An Accident Known As Blue., Steven Randall

Theses and Dissertations

My thesis installation emerged from an interest in visualizing breath. The resulting work came to exist at the intersection between art, biology, and performance.

The unicorn tapestries were used as a generative point of departure to explore the preservation and transformation of images through time, by time, and with time. Reproductions of the six tapestries were each etched into paper and then submerged into solutions of Phenol Red dye, Ferric Ferrocyanide (also known as Prussian Blue), and various forms of sodium chloride. Exhaled breath was used to encrust these images of the tapestries into physical objects which gradually crystallized and …

The Importance Of Motivation, Weapons, And Foul Odors In Driving Encounter Competition In Carnivores, Maximilian L. Allen, Christopher C. Wilmers, L. Mark Elbroch, Julie M. Golla, Heiko U. Wittmer

Environment and Society Faculty Publications

Encounter competition is interference competition in which animals directly contend for resources. Ecological theory predicts the trait that determines the resource holding potential (RHP), and hence the winner of encounter competition, is most often body size or mass. The difficulties of observing encounter competition in complex organisms in natural environments, however, has limited opportunities to test this theory across diverse species. We studied the outcome of encounter competition contests among mesocarnivores at deer carcasses in California to determine the most important variables for winning these contests. We found some support for current theory in that body mass is important in …

Pain In Parallel, Peter Godfrey-Smith

Animal Sentience

Key's (2016) arguments against the view that fish feel pain can be shown to be fallacious by considering some damage-related behaviors in invertebrates. Pain may have different neural bases in different organisms, so the absence in fish of the cortical structures that might underlie pain in mammals does not settle the question of fish pain.

Nonverbal Indicators Of Pain, Simon Van Rysewyk

Animal Sentience

In discussing fish pain, Key (2016) privileges pain in humans — “the only species able to directly report on its feelings.” Human experience of pain is not necessarily best reflected by verbal self-report, however. Neural responses to noxious stimuli are influenced by individual differences and by context. Nonverbal pain displays such as facial expressions reflect part of the neural response to noxious stimuli. Most mammals have a specific facial grimace reflecting pain. If fish have a somatic expression of pain, the development of a reliable and accurate somatic pain scale specific to fish could make a contribution to the debate …

New Verified Nonindigenous Amphibians And Reptiles In Florida Through 2015, With A Summary Of More Than 152 Years Of Introductions, Kenneth L. Krysko, Louis A. Somma, Dustin C. Smith, Christopher R. Gillette, Daniel Cueva, Joseph A. Wasilewski, Kevin M. Enge, Steve A. Johnson, Todd S. Campbell, Jake R. Edwards, Michael R. Rochford, Ryan Tompkins, Jeffrey L. Fobb, Scott Mullin, Christopher J. Lechowicz, Dallas Hazelton, Alície Warren

Papers in Herpetology

More nonindigenous species occur in Florida, USA, than any other region worldwide and may threaten many of Florida’s natural resources. The frequency of new reports mandates the need for regular updates. Herein, we use photographic and specimen vouchers in addition to literature records to provide updated information on verified nonindigenous amphibians and reptiles in Florida. Between our most recent summary in 2012 and the end of 2015, 38 additional species are known to have been intercepted (n = 2) or introduced (n = 36). We also update the invasion stage of seven species previously reported from Florida and …

Effects Of Stream Degradation On Ecosystem Function Are Mediated By Local Microbial And Macroinvertebrate Leaf Litter Processing, Carla Rothenbuecher

Murray State Theses and Dissertations

Riparian areas are fundamental to aquatic ecosystems by regulating temperature and light regimes, and providing allochthonous subsidies critical to the survival of aquatic and terrestrial species. On a global scale, increased rates of anthropogenic disturbance from agricultural activities and urbanization have caused the degradation of aquatic habitats. As a result, billions of dollars have been spent on stream restoration projects to protect aquatic resources; however, fundamental ecosystem processes like litter decomposition are rarely addressed. We conducted a litterbag experiment in a degraded high desert stream proposed for large-scale restoration to test the effects of reach location, canopy cover, and temperature …

The Contribution Of Marine Aggregate-Associated Bacteria To The Accumulation Of Pathogenic Bacteria In Oysters: An Agent-Based Model, Andrew M. Kramer, J. Evan Ward, Fred C. Dobbs, Melissa L. Pierce

OES Faculty Publications

Bivalves process large volumes of water, leading to their accumulation of bacteria, including potential human pathogens (e.g., vibrios). These bacteria are captured at low efficiencies when freely suspended in the water column, but they also attach to marine aggregates, which are captured with near 100% efficiency. For this reason, and because they are often enriched with heterotrophic bacteria, marine aggregates have been hypothesized to function as important transporters of bacteria into bivalves. The relative contribution of aggregates and unattached bacteria to the accumulation of these cells, however, is unknown. We developed an agent-based model to simulate accumulation of vibrio-type bacteria …

A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Hsu-Kunag Chang, Fred C. Dobbs

OES Faculty Publications

The turbid, low-light waters characteristic of aquaculture ponds have made it difficult or impossible for previous video cameras to provide clear imagery of the ponds' benthic habitat. We developed a highly sensitive, underwater video system (UVS) for this particular application and tested it in shrimp ponds having turbidities typical of those in southern Taiwan. The system's high-quality video stream and images, together with its camera capacity (up to nine cameras), permit in situ observations of shrimp feeding behavior, shrimp size and internal anatomy, and organic matter residues on pond sediments. The UVS can operate continuously and be focused remotely, a …

Effects Of Temperature, Irradiance And Pco2 On The Growth And Nitrogen Utilization Of Prorocentrum Donghaiense, Zhangxi Hu, Margaret R. Mulholland, Ning Xu, Shunshan Duan

OES Faculty Publications

Environmental factors such as temp erature, irradiance, and nitrogen (N) supply affect the growth of Prorocentrum donghaiense, but the interactive effects of these physical factors and the effects of atmospheric CO₂ (pCO₂) on growth and N uptake have not been examined. We compared growth kinetics of P. donghaiense grown on 4 different N substrates (nitrate [NO₃ -], ammonium [NH₄ +], urea, and glutamic acid [glu]) with respect to temperature, irradiance, and pCO₂. Temperature (15 to 30°C) had a positive effect on growth (max. growth rates: 0.17 to 0.65 d …

The Nutritional Value Of Fecal Sacs: Testing The Parental Nutrition Hypothesis, Amanda W. Burns

College of Graduate Studies: Theses & Dissertations

Nest sanitation is an important aspect of parental investment in birds with altricial nestlings. Passerine nestlings produce fecal matter that is encased in a mucous membrane for easy disposal. These fecal sacs are either removed from the nest and transported a distance away or they are ingested by the adult. A decline in fecal sac ingestion rates as nestlings age has been observed in several species. The parental nutrition hypothesis posits that this pattern can be attributed to increasing digestive efficiency as nestlings age. The parental nutrition hypothesis makes three predictions: fecal sac consumption rates should decrease as nestlings age, …

The Effects Of Thermal Opportunity And Habitat On Physiological Performance In Ecologically Distinct Populations Of The Florida Scrub Lizard Sceloporus Woodi, Lauren K. Neel

College of Graduate Studies: Theses & Dissertations

An ectotherm’s ability to thermoregulate affects many physiological traits. Therefore, thermal factors are paramount when considering behavior, activity time, body temperatures, energy budget, and performance capabilities. The Florida scrub lizard (Sceloporus woodi) is a ground-dwelling lizard that occupies longleaf pine and sand pine scrub habitats in the Ocala National Forest. Here, this species’ habitat is maintained by either clear-cut logging in scrub stands, or prescribed burning in long leaf pine stands. These habitat types differ in their dominant vegetation, canopy cover, and availability of vertical perches and thus are ecologically different. I used biophysical models to measure the …

Animal Sentience: The Other-Minds Problem, Stevan Harnad

Animal Sentience

The only feelings we can feel are our own. When it comes to the feelings of others, we can only infer them, based on their behavior — unless they tell us. This is the “other-minds problem.” Within our own species, thanks to language, this problem arises only for states in which people cannot speak (infancy, aphasia, sleep, anaesthesia, coma). Our species also has a uniquely powerful empathic or “mind-reading” capacity: We can (sometimes) perceive from the behavior of others when they are in states like our own. Our inferences have also been systematized and operationalized in biobehavioral science …

Why Fish Do Not Feel Pain, Brian Key

Animal Sentience

Only humans can report feeling pain. In contrast, pain in animals is typically inferred on the basis of nonverbal behaviour. Unfortunately, these behavioural data can be problematic when the reliability and validity of the behavioural tests are questionable. The thesis proposed here is based on the bioengineering principle that structure determines function. Basic functional homologies can be mapped to structural homologies across a broad spectrum of vertebrate species. For example, olfaction depends on olfactory glomeruli in the olfactory bulbs of the forebrain, visual orientation responses depend on the laminated optic tectum in the midbrain, and locomotion depends on pattern generators …

Cognitive Evidence Of Fish Sentience, Jonathan Balcombe

Animal Sentience

I present a little-known example of flexible, opportunistic behavior by a species of fish to undermine Key’s (2016) thesis that fish are unconscious and unable to feel. Lack of a cortex is flimsy grounds for denying pain to fish, for on that criterion we must also then deny it to all non-mammals, including birds, which goes against scientific consensus. Notwithstanding science’s fundamental inability to prove anything, the precautionary principal dictates that we should give the benefit of the doubt to fish, and the state of the oceans dictates that we act on it now.

Why Human Pain Can’T Tell Us Whether Fish Feel Pain, Victoria A. Braithwaite, Paula Droege

Animal Sentience

In his target article, Key (2016) reviews the neuroanatomy of human pain and uses what is known about human pain to argue that fish cannot experience pain. We provide three reasons why the conclusions reached by Key are unsupported. They consider (i) why it is not sufficient to conclude that only human neural structures can process conscious pain, (ii) why an understanding of pain in humans and non-human animals needs to be based within a framework of consciousness, and (iii) evidence already exists that fish treated with noxious stimuli lose the ability to perform normal behaviours: This was a behavioral …

An Invertebrate Perspective On Pain, Jennifer A. Mather

Animal Sentience

Although Key (2016) argues that mammals feel pain and fish do not, from an invertebrate perspective, it is obvious that the pain experience is shared by animals from a number of different animal groups.

Fish Lack The Brains And The Psychology For Pain, Stuart W.G. Derbyshire

Animal Sentience

Debate about the possibility of fish pain focuses largely on the fish’s lack of the cortex considered necessary for generating pain. That view is appealing because it avoids relatively abstract debate about the nature of pain experience and subjectivity. Unfortunately, however, that debate cannot be entirely avoided. Subcortical circuits in the fish might support an immediate, raw, “pain” experience. The necessity of the cortex only becomes obvious when considering pain as an explicitly felt subjective experience. Attributing pain to fish only seems absurd when pain is considered as a state of explicit knowing.