Ecology and Evolutionary Biology Commons^™

Understanding The Structure And Functioning Of Polar Pelagic Ecosystems To Predict The Impacts Of Change, E. E. Murphy, R. D. Cavanagh, K. F. Drinkwater, S. M. Grant, J. J. Heymans, E. E. Hofmann, G. L. Hunt Jr., N. M. Johnston

CCPO Publications

The determinants of the structure, functioning and resilience of pelagic ecosystems across most of the polar regions are not well known. Improved understanding is essential for assessing the value of biodiversity and predicting the effects of change (including in biodiversity) on these ecosystems and the services they maintain. Here we focus on the trophic interactions that underpin ecosystem structure, developing comparative analyses of how polar pelagic food webs vary in relation to the environment. We highlight that there is not a singular, generic Arctic or Antarctic pelagic food web, and, although there are characteristic pathways of energy flow dominated by …

Invasion Of Two Tick-Borne Diseases Across New England: Harnessing Human Surveillance Data To Capture Underlying Ecological Invasion Processes, Katharine S. Walter, Kim M. Pepin, Colleen T. Webb, Holly D. Gaff, Peter J. Krause, Virginia E. Pitzer, Maria A. Diuk-Wasser

Biological Sciences Faculty Publications

Modelling the spatial spread of vector-borne zoonotic pathogens maintained in enzootic transmission cycles remains a major challenge. The best available spatio-temporal data on pathogen spread often take the form of human disease surveillance data. By applying a classic ecological approach-occupancy modelling-to an epidemiological question of disease spread, we used surveillance data to examine the latent ecological invasion of tick-borne pathogens. Over the last half-century, previously undescribed tick-borne pathogens including the agents of Lyme disease and human babesiosis have rapidly spread across the northeast United States. Despite their epidemiological importance, the mechanisms of tick-borne pathogen invasion and drivers underlying the distinct …

Ecology Of Two Reintroduced Black Bear Populations In The Central Appalachians, Sean Mccarthy Murphy

Theses and Dissertations--Animal and Food Sciences

Reintroduced populations are vulnerable to demographic and environmental stochasticity, deleterious genetic effects, and reduced population fitness, all of which can increase extinction probability. Population viability is principle to determining the status of reintroduced populations and for guiding management decisions. To attempt to reestablish black bear (Ursus americanus) populations in the central Appalachians, two reintroductions using small founder groups occurred during the 1990s in the Big South Fork area along the Kentucky-Tennessee border (BSF) and in the Jefferson National Forest along the Kentucky-Virginia border (KVP). My objectives were to estimate demographic and genetic parameters, and to evaluate long-term viability …

Phytoplankton Pigment Specific Growth And Losses Due To Microzooplankton Grazing In A Northern Gulf Of Mexico Estuary During Winter/Fall, Amanda M. Mcgehee, Donald G. Redalje

Gulf and Caribbean Research

Microzooplankton dilution grazing experiments were carried out on 6 dates, over a 3 month period at 2 locations in the Bay of St. Louis, MS (BSL) to determine phytoplankton pigment specific growth rates under natural (µ₀) and replete (µ_n) nutrient conditions and microzooplankton grazing. We hypothesized that diatoms would be the largest portion of the phytoplankton composition due to the winter/fall season and that these organisms would have the highest growth/grazing rates. We suspected that river flow from the Jourdan River would adversely affect growth and grazing rates of all phytoplankton classes. Growth rates of 5 …

Assessing The Cost Of Global Biodiversity And Conservation Knowledge, Diego Juffe-Bignoli, Thomas M. Brooks, Stuart H. M. Butchart, Richard B. Jenkins, Kaia Boe, Michael Hoffman, Ariadne Angulo, Steve Bachman, Monica Böhm, Neil Brummitt, Kent E. Carpenter

Biological Sciences Faculty Publications

Knowledge products comprise assessments of authoritative information supported by standards, governance, quality control, data, tools, and capacity building mechanisms. Considerable resources are dedicated to developing and maintaining knowledge products for biodiversity conservation, and they are widely used to inform policy and advise decision makers and practitioners. However, the financial cost of delivering this information is largely undocumented. We evaluated the costs and funding sources for developing and maintaining four global biodiversity and conservation knowledge products: The IUCN Red List of Threatened Species, the IUCN Red List of Ecosystems, Protected Planet, and the World Database of Key Biodiversity Areas. These are …

Isolation And Characterization Of Eight Polymorphic Microsatellites For The Spotted Spiny Lobster, Panulirus Guttatus, Nathan Truelove, Donald C. Behringer, Mark J. Butler Iv, Richard F. Preziosi

Biological Sciences Faculty Publications

Microsatellite sequences were isolated from enriched genomic libraries of the spotted spiny lobster, Panulirus guttatus using 454 pyrosequencing. Twenty-nine previously developed polymerase chain reaction primer pairs of Panulirus argus microsatellite loci were also tested for cross-species amplification in Panulirus guttatus. In total, eight consistently amplifying, and polymorphic loci were characterized for 57 individuals collected in the Florida Keys and Bermuda. The number of alleles per locus ranged from 8 to 20 and observed heterozygosities ranged from 0.409 to 0.958. Significant deviations from Hardy–Weinberg equilibrium were found in one locus from Florida and three loci from Bermuda. Quality control testing indicated …

Age-Old Palms On Florida’S Ancient Ridges, Warren G. Abrahamson Ii

Faculty Journal Articles

Genetic fingerprinting, ramet growth rate determinations, and mathematical modeling (Minimum branching trees) were used to estimate clone ages of saw palmettos at Archbold Biological Station in Florida. Growth rates indicate that 500 year old saw palmetto ramets are common. Genetically identified clones (genets) are estimated to be thousands of years old, likely exceeding 5,000 years of age.

Quantifying The Success Of Eastern Oyster Pilot Reefs In Brevard County, Florida, Lacie Anderson

Honors Undergraduate Theses

Crassostrea virginica, the eastern oyster, is a native keystone species that inhabits many coastal and estuarine ecosystems along the Atlantic seaboard. Introduction of the eastern oyster into estuarine areas with limited current populations is gaining popularity as a pro-active approach to improve estuarine water quality. In November 2014 and April 2015, a total of five pilot oyster reef treatments were deployed in Brevard County: bagged adult oysters (grown by community members under their docks through oyster gardening) collected in fall 2014 and spring 2015, bagged clean shell, oyster restoration mats, and empty plots (control). Locations of deployment included a …

Phenotypic And Genetic Analyses Of Adaptation To Geothermal Soils In Yellow Monkeyflowers Of Yellowstone National Park, Peter Breigenzer

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Microgeographic adaptation, which occurs on a spatial scale smaller than the dispersal distance of the evolving organisms, provides a fertile context for understanding the genetic processes that shape natural variation and contribute to biological diversity. In plants, mosaics of distinct soil conditions can select for microgeographic divergence in the face of gene flow, leading to major life history transitions and novel trait evolution. Mimulus (monkeyflowers) is an emerging model genus for ecological genomics, due to tremendous diversity, experimental tractability, and a wealth of genomic resources. In Yellowstone National Park, Mimulus guttatus occurs in both geothermal soils and nearby nonthermal bogs …

Development And Evaluation Of A Habitat Suitability Model For White-Tailed Deer In An Agricultural Landscape, Eric Anstedt

All Graduate Theses, Dissertations, and Other Capstone Projects

White-tailed deer (Odocoileus virginianus) are an ecological, economical, and socially significant species that occupy a variety of ecoregions. White-tailed deer are mobile habitat generalists that prefer habitats containing woody cover. Deer have successfully adapted to habitat-fragmented, agricultural landscapes. As a result, deer are not uniformly distributed across intensively cultivated areas, which make field surveys difficult with often highly variable spatial data. To increase sampling efficiency (deer observed / sampling effort), the landscape can be stratified based upon preferred habitat types. Habitat suitability models (HSI) have been used to represent hypothesized wildlife-habitat relationships, and therefore the likelihood of deer being observed …

Carbon Flux Dynamics In High Altitude Peatlands In The Ecuadorian Andes, Maria Elisa Sanchez Garces

Dissertations, Master's Theses and Master's Reports

Although knowledge of peatland CH₄ and CO₂ exchange in temperate mountain ecosystems is available, information about carbon (C) exchange in peatlands of the Andean mountains is limited and these ecosystems may behave differently given the particular characteristics of the Andean tropics. These ecosystems are highly productive and under pressure by grazing. Our first objective was to measure baseline carbon dioxide (CO₂) and methane (CH₄) flux in an undisturbed peatland in Cayambe-Coca National Park. Our second objective was to quantify CO₂ and CH₄ fluxes in an intensively cattle grazed peatland near Antisana Ecological …

Assessing The Impacts Of Climate Change On The Surface Temperature Of Inland Lakes In Michigan, Kaitlin Reinl

Dissertations, Master's Theses and Master's Reports

The aim of this study was to validate and apply a lake model for predicting the susceptibility of small inland lakes in Michigan to changes in thermal regime and increased cyanobacteria growth as a result of future climate conditions. The Freshwater Lake Model was selected, tested for sensitivity to various inputs, and validated through comparison to observed conditions. The sensitivity analysis showed that the lake model was most sensitive to solar radiation, air temperature, and air humidity. Comparison of predicted climate data with observed conditions revealed highly variable climate model error. The lake model validation was conducted using 10 lakes …

Calculating The Rate Of Spread Of Phragmites Australis In Summit County, Oh Using Gis, Aaron W. Baumgardner

Williams Honors College, Honors Research Projects

Phragmites australis subspecies australis is a non-native species that forms dense monocultures and negatively affects wetland ecosystems. In this study, Geographic Information System (GIS) was used to analyze and compare intrinsic rates of growth between Phragmites populations located along highways and those within parks in Summit County, Ohio. No significant difference in expansion rate was seen between the two population types during a 4-year time period, although the average expansion rate was higher in park populations. Obstruction by roads may have prevented highway populations from expanding radially, while 2/3 of park populations were unobstructed in terms of physical barriers to …

Effects Of Invasion Timing In A One-Dimensional Model Of Competing Species With An Infectious Disease, Eliza Jacops

Williams Honors College, Honors Research Projects

In combining two classes of models, we are able to analyze the dynamics of two species that compete for the same resources while fighting a disease. The native species is the disease host and the invasive species enters their habitat and encounters the disease for the first time. Their natural response is to evolve resistance to the disease, and this can assist in their invasion of the natives' habitat. We find conditions for coexistence of the two species, conditions under which an invasion would succeed and wipe out all native individuals, and conditions under which the invasion fails. We explore …

Effects Of Epichloë Coenophiala−Tall Fescue Symbiosis On Plant-Microbe-Soil Interactions In A Temperate Pasture, Lindsey C. Slaughter

Theses and Dissertations--Plant and Soil Sciences

Plants interact in myriad ways with microorganisms to influence ecosystem processes such as nutrient cycling, which can regulate ecosystem response to global change. One important plant-microbe symbiosis occurs between cool-season grasses and asexual fungal Epichloë endophytes, such as tall fescue (Schedonorus arundinaceus) and Epichloë coenophiala. Because the common toxic strain of the endophyte (CTE) harms grazing livestock, non-livestock toxic endophyte (NTE) strains have been developed and are increasingly deployed in pastures. Little is known about how these symbioses impact other plant-microbe interactions and microbe-mediated soil processes in grassland ecosystems. I conducted three studies to determine how E. …

Winter Habitat Quality But Not Long- Distance Dispersal Influences Apparent Reproductive Success In A Migratory Bird, Clark S. Rushing, Peter P. Marra, Michele R. Dudash

Natural Resource Management Faculty Publications

Long- distance breeding and natal dispersal play central roles in many ecological and evolutionary processes, including gene flow, population dynamics, range expansion, and individual responses to fluctuating biotic and abiotic conditions. However, the relative contribution of long- distance dispersal to these processes depends on the ability of dispersing individuals to successfully reproduce in their new environment. Unfortunately, due to the difficulties associated with tracking dispersal in the field, relatively little is known about its reproductive consequences. Furthermore, because reproductive success is influenced by a variety of processes, disentangling the influence of each of these processes is critical to understanding the …

You Can't Catch A Fish With A Robot, R. Grant Gilmore Jr.

Gulf and Caribbean Research

Abstract

In this essay I will relate the challenges associated with deep sea ocean exploration as well as the advantages and disadvantages of today’s ocean technologies based on experience with most of these systems. After nearly five decades using robotic vehicles (Remotely Operated Vehicles = ROVs and Autonomous Underwater Vehicles = AUVs) and manned submarines for fish research, I thought it would be appropriate to briefly describe a career spent using these technologies as they were developed. Deep sea ichthyologists cannot effectively catch a swimming fish with a robot even 40 years after the development of the first ROV for …

Marine Infectious Disease Dynamics And Outbreak Thresholds: Contact Transmission, Pandemic Infection, And The Potential Role Of Filter Feeders, Gorka Bidegain, Eric N. Powell, John M. Klinck, Tal Ben-Horin, Eileen E. Hofmann

CCPO Publications

Disease-causing organisms can have significant impacts on marine species and communities. However, the dynamics that underlie the emergence of disease outbreaks in marine ecosystems still lack the equivalent level of description, conceptual understanding, and modeling context routinely present in the terrestrial systems. Here, we propose a theoretical basis for modeling the transmission of marine infectious diseases (MIDs) developed from simple models of the spread of infectious disease. The models represent the dynamics of a variety of host-pathogen systems including those unique to marine systems where transmission of disease is by contact with waterborne pathogens both directly and through filter-feeding processes. …

Effects Of Mountaintop Removal Mining On Population Dynamics Of Stream Salamanders, Sara B. Freytag

Theses and Dissertations--Forestry and Natural Resources

Mountaintop removal mining (MTR) is a notorious stressor of stream ecosystems in the Central Appalachians. Valley fills (VF) lead to reduced occupancy, abundance, and species richness of stream salamanders. Multiple factors may be responsible for these reductions, but specifically habitat fragmentation and degradation may reduce colonization rates and increase local extinction rates. From 2013-2015, repeated counts of salamanders were conducted in stream reaches impacted by MTR/VF and compared to counts in reference reaches to answer the question: do stream salamander population dynamics differ between stream reaches impacted by MTR/VF and reference stream reaches? I also investigated dynamics of stream habitat …

Hawks And Owls, Brian E. Washburn

Wildlife Damage Management Technical Series

Human-Wildlife Conflicts: Hawks and owls can negatively impact a variety of human interests, including important natural resources, livestock and game bird production, human health and safety, and companion animals. Conflicts between raptors and people generally are localized and often site-specific. However, the economic and social impacts to the individuals involved can be severe. Despite the problems they may cause, hawks and owls provide important benefits and environmental services. Raptors are popular with birdwatchers and much of the general public. They also hunt and kill large numbers of rodents, reducing crop damage and other problems.

Damage Identification

Management Methods

Economics

Species …

Species Distribution Modeling Of North American Odonates, Rebecca Beilinson

Library Map Prize

Species distribution modeling, which uses species-environment relationships to predict species’ geographic ranges, is a powerful technique for biogeographical and ecological analysis as well as for conservation planning. However, it has typically been underutilized for invertebrates and for freshwater species, as modeling these groups can pose unique challenges. Here I present methods for modeling odonate distributions and demonstrate these methods for four North American species. I show that incorporating expert-derived range maps as spatial priors can significantly improve model performance as compared to MaxEnt models. I also introduce a new distance to freshwater layer as an environmental variable, and show that …

Population Sampling Of Chelonians In An Urban Lake In Jonesboro, Craighead County, Arkansas, J. D. Konvalina, C. S. Thigpen, S. E. Trauth

Journal of the Arkansas Academy of Science

We conducted a mark-recapture survey for aquatic turtles in Craighead Forest Lake in Jonesboro (Craighead County, Arkansas). From July 2, 2015 to October 14, 2015, we set six hoop nets, baited with fish parts, at specific shoreline locations around the lake. Traps were set twice a week and checked 12 hours after they were set. Carapace length, carapace width, plastron length, and plastron width were measured for each individual. Each turtle was identified to species and its sex was recorded. We also placed a notch in one or more of its marginal scutes to aid in future identification. Finally, a …

Acanthocephala Of Arkansas, Including New Host And Geographic Distribution Records From Fishes, C. T. Mcallister, D. J. Richardson, M. A. Barger, T. J. Fayton, H. W. Robison

Journal of the Arkansas Academy of Science

Little is known about the spiny- or thorny-headed worms (Phylum Acanthocephala) of Arkansas and there are no summaries on the acanthocephalans of the state. Here, we provide a checklist of the 22 acanthocephalans that occur in Arkansas’ vertebrates based on previously published records and new data presented herein. In addition, we document a new state record as well as 13 new host records for some fish acanthocephalans.

The Ticks (Arachnida: Acari: Ixodida) Of Arkansas, C. T. Mcallister, L. A. Durden, H. W. Robison

Journal of the Arkansas Academy of Science

Although ticks are a nuisance to humans and other animals, they are an important part of the biota of North America. In addition, they are vectors of many tick-borne disease agents that can negatively affect higher vertebrates. In Arkansas, there have been no recent comprehensive summaries of the ticks (Acari: Ixodida) in the last 40+ yrs. Here, we provide a summary of the ticks of the state and note the disease agents they can transmit.

Long-Term Monitoring And Recovery Of A Population Of Alligator Snapping Turtles, Macrochelys Temminckii (Testudines: Chelydridae), From A Northeastern Arkansas Stream, S. E. Trauth, D. S. Siegel, M. L. Mccallum, D. H. Jamieson, A. Holt, J. B. Trauth, H. Hicks, J. W. Stanley, J. Elston, J. J. Kelly, J. D. Konvalina

Journal of the Arkansas Academy of Science

We conducted a mark-recapture study of Alligator Snapping Turtles, Macrochelys temminckii, on Salado Creek (Independence Co., Arkansas) during 10 trapping seasons, which spanned a 20-year period (1995–2015). We trapped a total of 163 Alligator Snapping Turtles during 416 trap nights and recorded a total of 35 recaptures during this study. Both the catch per unit effort (CPUE) and Jolly-Seber approaches demonstrated that this population benefitted from removal of harvest pressure, thus leading to an increase in abundance of Alligator Snapping Turtles in the lower ~5 km of the creek. The CPUE averaged slightly greater than 0.24 (317 trap nights) during …

Gastrointestinal Parasites Of The Northern River Otter, Lontra Canadensis (Carnivora: Mustelidae), From Arkansas, C. T. Mcallister, A. Surf, R. Tumlison, C. R. Bursey, T. J. Fayton

Journal of the Arkansas Academy of Science

No abstract provided.

Activity Patterns, Home Range, And Microhabitat Selection Of A Terrestrial Turtle (Rhinoclemmys Rubida Perixantha) In A Tropical Dry Forest, Taggert G. Butterfield

All Master's Theses

Turtles are in trouble worldwide, with nearly half recognized by the International Union for Conservation of Nature (IUCN) as needing special protection. The Eurasian pond and Neotropical wood turtles of the family Geoemydidae are the most diverse turtles and comprise ¼ of all turtle species yet basic information on their natural history is lacking. Moreover, seasonal tropical dry forest (SDTF), where many geoemydids exist, is considered the most endangered ecosystem in the world. We investigated the activity patterns, home range size, and microhabitat selection of the Mexican Spotted Wood Turtle (Rhinoclemmys rubida perixantha) in its SDTF habitat by …

Testing The Forage Preference Of The American Pika (Ochotona Princeps) For Use In Connectivity Corridors In The Washington Cascades, Carly Wickhem, Kristina Ernest

All Master's Theses

One of the aims of the Snoqualmie Pass East Project (SPEP) in the Cascades of central Washington is to construct nearly 30 wildlife crossing structures along a 15-mile stretch of Interstate-90. American pikas (Ochotona princeps) are being monitored for the SPEP because they have specific habitat requirements and are poor dispersers. Making the crossing structures “pika-friendly” will encourage these low-mobility animals to use the structures. Recent research suggests that the presence of quality vegetation may help pika populations avoid declines and extirpations, so planting suitable forage within and adjacent to the crossings will be essential. During the summer …

Resolving Gnetum Evolutionary History, Angela Mcfadden

All Master's Theses

Gnetum are non-flowering seed plants of the tropics, indigenous to South America, Africa, and Asia. This group of about 40 species is fascinating to botanists because it shares distinctive morphological characteristics with flowering plants, such as broad leaves, woody stems, and flower-like strobili. There are still questions surrounding the relationships within the genus of Gnetum. With that in mind, I focused my work on generating phylogenetic hypotheses, using two molecular data sets: a concatenation of over 60 different chloroplast genes (66,815 base pairs), and the whole chloroplast genome (128,772 base pairs). This allowed me to compare the two phylogenies …

The Object Of Grief, Clark Glymour

Animal Sentience

King’s new book is a wonderful collection of diverse anecdotes illustrating the variety of animal practices that are convincing illustrations of grief. Those who want scientific arguments for that conclusion should, however, read elsewhere.