Ecology and Evolutionary Biology Commons^™

The Difference Between Conscious And Unconscious Brain Circuits, Ezequiel Morsella, Zaviera Reyes

Animal Sentience

Theoretical frameworks in which consciousness is an inherent property of the neuron must account for the contrast between conscious and unconscious processes in the brain and address how neural events can ever be unconscious if consciousness is a property of all neurons. Other approaches have sought answers regarding consciousness by contrasting conscious and unconscious processes and through investigating the complex interactions between the two kinds of processes, as occurs most notably in human voluntary action. In voluntary action, consciousness is associated most, not with motor control or low-level perceptual processing, but with the stage of processing known as action selection.

First Occurrence Of The Invasive Hydrozoan Gonionemus Vertens A. Agassiz, 1862 (Cnidaria: Hydrozoa) In New Jersey, Usa, John J. Gaynor, Paul A.X. Bologna, Dena J. Restaino, Christie Barry

Department of Biology Faculty Scholarship and Creative Works

Gonionemus vertens A. Agassiz, 1862 is a small hydrozoan native to the Pacific Ocean. It has become established in the northern and southern Atlantic Ocean as well as the Mediterranean Sea. We report on the first occurrence of this species in estuaries in New Jersey, USA,and confirm species identification through molecular sequence analysis. Given the large number of individuals collected, we contend that this is a successful invasion into this region with established polyps. The remaining question is the vector and source of these newly established populations.

Water Loss Rates And Desiccation Tolerances For Spiders And Crickets, Matthew Zach, Kevin E. Mccluney

Honors Projects

Despite the importance of water to living organisms, access varies across the globe with high variability over space and time. Seventy-five percent of the world’s freshwater alone is ice while 99% of unfrozen freshwater is underground (Winter et al. 1998). Understanding how terrestrial species respond to water availability and compensate for water stress can provide insight to their behavior, ecology and physiology. The goal of this research was to examine the differences in the evaporative water loss rates and desiccation tolerances of Hogna carolinensis and Acheta domesticus. First, an experiment was conducted to quantify the rate of evaporative water …

Resolving The Hard Problem And Calling For A Small Miracle, Arthur S. Reber

Animal Sentience

With the exception of the commentary by Key, the commentaries on Reber have a common feature: the commenters feel, with varying levels of enthusiasm, that there is at least some virtue in the core assumption of the Cellular Basis of Consciousness (CBC) theory that consciousness (or subjectivity or sentience) accompanies the earliest forms of life. The model has two important entailments: (a) it resolves the (in)famous Hard Problem by redirecting the search for the biochemical foundations of sentience away from human consciousness; and (b) it reduces the need for an emergentist miracle to a far simpler scale than is currently …

No Help On The Hard Problem, Derek Ball

Animal Sentience

The hard problem of consciousness is to explain why certain physical states are conscious: why do they feel the way they do, rather than some other way or no way at all? Arthur Reber (2016) claims to solve the hard problem. But he does not: even if we grant that amoebae are conscious, we can ask why such organisms feel the way they do, and Reber’s theory provides no answer. Still, Reber’s theory may be methodologically useful: we do not yet have a satisfactory theory of consciousness, but perhaps the study of simple minds is a way to go about …

Climate Change Drives Outbreaks Of Emerging Infectious Disease And Phenological Shifts, Jeremy Cohen

USF Tampa Graduate Theses and Dissertations

Climate change is expected to impact species by altering infectious disease outcomes, modifying community composition, and causing species to shift their phenology, body sizes and range distributions. However, the outcomes of these impacts are often controversial; for example, scientists have debated whether climate change will exacerbate emerging infectious disease and which species are at greatest risk to advance their phenology. There reason for these controversies may be that climate change is impacting diverse processes across a wide range of ecological scales, as the interplay between fine-scale processes and broad-scale dynamics can often cause unpredictable changes to the biosphere. Therefore, it …

Unconscious Higher-Order Thoughts (Hots) As Pre-Reflective Self-Awareness?, Rocco J. Gennaro

Animal Sentience

Rowlands argues that many nonhuman animals are “persons,” contrary to the prevailing orthodoxy which rests on a mistaken conception of the kind of self-awareness relevant to personhood. He argues that self-awareness bifurcates into two importantly different forms — reflective self-awareness and pre-reflective self-awareness — and that many animals can have the latter, which is sufficient for personhood. I agree that there is good reason to think that many animals can have pre-reflective self-awareness, but I think Rowlands is mistaken about its nature. His account runs the risk of leading to an infinite regress objection, and his notion of pre-reflective self-awareness …

Plant-Biocrust Interactions Mediated By The Fungal Loop, Eva Dettweiler-Robinson

Biology ETDs

Plant-microbial interactions influence biogeochemical cycles. Plants and biological soil crusts are primary producers in drylands. Biocrusts include cyanobacteria, lichens, mosses, algae, fungi, bacteria, and archaea on the soil surface, some of which fix atmospheric nitrogen. I investigated controls on biocrust carbon fluxes and their contribution to ecosystem fluxes, the incorporation of plant-derived carbon into biocrusts, and the role of soil fungi in promoting performance of plants and biocrusts. Biocrusts responded to temperature and moisture differently by biome. Biocrusts in grasslands/shrublands contributed >25% of total summertime ecosystem respiration, but biocrusts in savannas/woodlands contributed < 1%. Biocrusts contributed < 2% to GPP in any biome. To augment their native photosynthesis, biocrusts may include 16% plant-derived carbon. Fungal connections improved plant and biocrust performance and reduced differences in the CN ratio between organisms compared to when connections were impeded. Investigation of interactions among biocrusts, plants, and fungi has improved understanding of resource cycling in drylands.

Influence Of Water Quality On Stony Coral Diversity And Net Community Productivity In The Florida Keys, María Vega-Rodriguez

USF Tampa Graduate Theses and Dissertations

Worldwide, coral cover has declined at rates that have often exceeded 5% per year since the 1980’s. Populations of scleractinians (stony corals) in the Florida Keys reef tract have declined as well, with some communities declining at rates > 3% per year. Decreased water quality (e.g., steady increases in the ocean water temperatures and increased pollution, nutrients, or water turbidity due to coastal runoff) are commonly attributed to this decline. But actual linkages between variability and trends in these environmental parameters, and in stony coral diversity and ecosystem functions such as net community production, have not yet been well characterized.

With …

Genome Of The Asian Longhorned Beetle (Anoplophora Glabripennis), A Globally Significant Invasive Species, Reveals Key Functional And Evolutionary Innovations At The Beetle-Plant Interface, Duane D. Mckenna, Erin D. Scully, Yannick Pauchet, Kelli Hoover, Roy Kirsch, Scott M. Geib, Robert F. Mitchell, Robert M. Waterhouse, Seung-Joon Ahn, Deanna Arsala, Joshua B. Benoit, Heath Blackmon, Tiffany Bledsoe, Julia H. Bowsher, André Busch, Bernarda Calla, Hsu Chao, Anna K. Childers, Christopher Childers, Dave J. Clarke, Lorna Cohen, Jeffery P. Demuth, Huyen Dinh, Harshavardhan Doddapaneni, Amanda Dolan, Jian J. Duan, Shannon Dugan, Markus Friedrich, Karl M. Glastad, Michael A. D. Goodisman, Stephanie Haddad, Yi Han, Daniel S. T. Hughes, Panagiotis Ioannidis, J. Spencer Johnston, Jeffery W. Jones, Leslie A. Kuhn, David R. Lance, Chien-Yueh Lee, Sandra L. Lee, Han Lin, Jeremy A. Lynch, Armin P. Moczek, Shwetha C. Murali, Donna M. Muzny, David R. Nelson, Subba R. Palli, Kristen A. Panfilio, Dan Pers, Monica F. Poelchau, Honghu Quan, Jiaxin Qu, Ann M. Ray, Joseph P. Rinehart, Hugh M. Robertson, Richard Roehrdanz, Andrew J. Rosendale, Seunggwan Shin, Christian Silva, Alex S. Torson, Iris M. Vargas Jentzsch, John H. Werren, Kim C. Worley, George Yocum, Evgeny M. Zdobnov, Richard A. Gibbs, Stephen Richards

Entomology Faculty Publications

Background: Relatively little is known about the genomic basis and evolution of wood-feeding in beetles. We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle.

Results: …

An Ecosystem-Based Approach To Reef Fish Management In The Gulf Of Mexico, Michelle D. Masi

USF Tampa Graduate Theses and Dissertations

Fisheries managers have the potential to significantly improve reef fish management in the Gulf of Mexico through the use of ecosystem-based approaches to fisheries management. Ecosystem-based approaches are needed to address the effects of fishing on trophodynamic interactions, to better account for ecosystem-scale processes in model projections, and to recognize the short and long-term biomass tradeoffs associated with making regulatory choices. My research was concentrated around three objectives: (1) characterizing the trophodynamic interactions between Gulf of Mexico fishes, in order to construct an invaluable tool (a Gulf of Mexico Atlantis model) to be used in ecological hypothesis testing and policy …

Radiation Damage In Xfel: Case Study From The Oxygen-Evolving Complex Of Photosystem Ii, Muhamed Amin, Ashraf Badawi, S.S. Obayya

Publications and Research

Structural changes induced by radiation damage in X-ray crystallography hinder the ability to understand the structure/function relationship in chemical reactions. Serial femtosecond crystallography overcomes this problem by exposing the sample to very short and intense laser pulse leading to measurement before destruction. Here we use molecular modeling to map the radiation damage during the 10–50 fs to the intensity, the energy and the time duration of the laser pulse on the oxygen-evolving complex (OEC) of photosystem II. In the model, the nuclei move classically in a fully quantum potential created by electron density under the effect of strong laser pulse …

Responding To Modern Flooding: Old English Place-Names As A Repository Of Traditional Ecological Knowledge, Richard L.C. Jones

Journal of Ecological Anthropology

Place-names are used to communicate Traditional Ecological Knowledge (TEK) by all indigenous, aboriginal and First Nations people. Here and for the first time, English place-names are examined through a TEK lens. Specifically, place-names formed in Old English—the language of the Anglo-Saxon—and coined between c. 550 and c. 1100 A.D., are explored. This naming horizon provides the basic name stock for the majority of English towns and villages still occupied today. While modern English place-names now simply function as convenient geographical tags Old English toponymy is shown here to exhibit close semantic parallels with many other indigenous place-names around the world. …

Swimming Mechanisms Of Temperate Forest Ants, Noah D. Gripshover, Evan M. Gora, Stephen P. Yanoviak

Posters-at-the-Capitol

Swimming Mechanisms of Temperate Forest Ants (Camponotus pennsylvanicus and Formica subsericea)

Noah D. Gripshover, Evan M. Gora, and Stephen P. Yanoviak

University of Louisville

Abstract

Environmental challenges shape the evolution of animal behavior and morphology. For wingless terrestrial invertebrates like ants, pools of water on the forest floor are particularly dangerous. Here we show that ants can overcome this obstacle using a modified gait to transverse the water surface. We compared the locomotor morphology and swimming performance of two arboreal ant species that are common in Kentucky (Camponotus pennsylvanicus and Formica subsericea). We defined performance as speed …

Sandhill Crane Roost Selection, Human Disturbance, And Forage Resources, Aaron T. Pearse, Gary L. Krapu, David A. Brandt

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Sites used for roosting represent a key habitat requirement for many species of birds because availability and quality of roost sites can influence individual fitness. Birds select roost sites based on numerous factors, requirements, and motivations, and selection of roosts can be dynamic in time and space because of various ecological and environmental influences. For sandhill cranes (Antigone canadensis) at their main spring staging area along the Platte River in south-central Nebraska, USA, past investigations of roosting cranes focuse donphysical channel characteristics related to perceived security as motivating roost distribution.We used 6,310 roost sites selected by 313 sandhill cranes over …

Resource Use Overlap In A Native Grouper And Invasive Lionfish, Joseph Schmidt Curtis

USF Tampa Graduate Theses and Dissertations

Invasive species can severely disrupt biological communities through their interactions with native organisms, yet little is known about the response of marine predators to the establishment of a competitive invasive fish. In the western Atlantic, invasive Indo-Pacific lionfishes (Pterois spp.) may represent a novel competitor to several commercially and ecologically important native species. However, there is a scarcity of empirical research documenting comparative resource use of cohabitant lionfish and native fishes, as well the physiological consequences that may result from interspecific interactions with the invasive species. For this thesis, I conducted two studies designed to elucidate the strength …

The Psychological Concept Of “Person”, Kristin Andrews

Animal Sentience

Reluctance to overextend personhood seems to drive many of the skeptical responses in the first round of commentaries on Rowlands's target article. Despite Rowlands’s straightforward Response that we already accept some nonhumans as persons, there is still hesitation to accept that other nonhuman animals are persons. Rowlands's argument is sound but the skeptics don’t accept the Lockean notion of person. The metaphysical sense of person is a psychological one, however, and psychological properties grant one moral status according to many ethical theories.

Design Of Novel Ion Channel Modulators, Vladimir Yarov-Yarovoy

Science Seminar Series

Function and modulation of neuronal sodium channels are critical for the neuromodulation of electrical excitability and synaptic transmission in neurons - the basis for many aspects of signal transduction, learning, memory and physiological regulation. Mutations in neuronal voltage-gated sodium channel genes are responsible for various human neurological disorders. Furthermore, human neuronal voltage-gated sodium channels are primary targets of therapeutic drugs used as local anesthetics and for treatment of neurological and cardiac disorders. Yarov-Yarovoy's lab is working on rational design of novel therapeutically useful blockers of voltage-gated sodium channels for treatment of pain and epilepsy. Serious, chronic pain affects at least …

Effect Of Rpon, Rpos And Luxs Pathways On The Biofilm Formation And Antibiotic Sensitivity Of Borrelia Burgdorferi, Eva Sapi, Priyanka A. Theophilus, Truc V. Pham, Divya Burugu, David Luecke

Biology and Environmental Science Faculty Publications

Borrelia burgdorferi, the causative agent of Lyme disease, is capable of forming biofilm in vivo and in vitro, a structure well known for its resistance to antimicrobial agents. For the formation of biofilm, signaling processes are required to communicate with the surrounding environment such as it was shown for the RpoN—RpoS alternative sigma factor and for the LuxS quorum-sensing pathways. Therefore, in this study, the wild-type B. burgdorferi and different mutant strains lacking RpoN, RpoS, and LuxS genes were studied for their growth characteristic and development of biofilm structures and markers as well as for their antibiotic sensitivity. …

Integrated Fisheries Management Resource Report Pearl Oyster (Pinctada Maxima) Resource, Department Of Fisheries

Fisheries Management Papers

This report has been prepared to provide the Intergrated Fisheries Allocation Advisory Committee (Allocation Committee) with a summarised, factual account of the nature and status of the Pinctada maxima (P. maxima) pearl oyster resource and current and historical trends in its use and conservation.

Policy On The Application Of Fish Size Limits In Western Australia, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Silica Uptake And Release In Live And Decaying Biomass In A Northern Hardwood Forest, Wim Clymans, Daniel J. Conley, John J. Battles, Patrick J. Frings, Mary Margaret Koppers, Gene E. Likens, Chris E. Johnson

Civil and Environmental Engineering - All Scholarship

In terrestrial ecosystems, a large portion (20–80%) of the dissolved Si (DSi) in soil solution has passed through vegetation. While the importance of this “terrestrial Si filter” is generally accepted, few data exist on the pools and fluxes of Si in forest vegetation and the rate of release of Si from decomposing plant tissues. We quantified the pools and fluxes of Si through vegetation and coarse woody debris (CWD) in a northern hardwood forest ecosystem (Watershed 6, W6) at the Hubbard Brook Experimental Forest (HBEF) in New Hampshire, USA. Previous work suggested that the decomposition of CWD may have significantly …

Reproductive Success Through High Pollinator Visitation Rates Despite Self Incompatibility In An Endangered Wallflower, Miranda K. Melen, Julie A. Herman, Jessica Lucas, Rachel E. O’Malley, Ingrid M. Parker, Aaron M. Thom, Justen B. Whittall

Biology

PREMISE OF THE STUDY: Self incompatibility (SI) in rare plants presents a unique challenge—SI protects plants from inbreeding depression, but requires a sufficient number of mates and xenogamous pollination. Does SI persist in an endangered polyploid? Is pollinator visitation sufficient to ensure reproductive success? Is there evidence of inbreeding/outbreeding depression? We characterized the mating system, primary pollinators, pollen limitation, and inbreeding/outbreeding depression in Erysimum teretifolium to guide conservation efforts.

METHODS: We compared seed production following self pollination and within- and between-population crosses. Pollen tubes were visualized after self pollinations and between-population pollinations. Pollen limitation was tested in the field. Pollinator …

Monk Parakeets, Michael L. Avery, James R. Lindsay

Wildlife Damage Management Technical Series

Since their introduction to the United States in the 1960s, monk parakeets (Myiopsitta monachus) have thrived (Figure 1). Until recently, annual Christmas Bird Count data have shown the population to be increasing exponentially. In the U.S., monk parakeets are an urban and suburban species with few natural predators, diseases or other factors limiting their population growth. They exploit backyard bird feeders and non-native ornamental plants for food. Monk parakeets often construct nests on man-made structures, such as electric utility facilities and cell phone towers. Because the birds build and maintain nests throughout the year, management of parakeet populations …

Classification Of Historical Vegetation In Oregon And Washington, As Recorded By General Land Office Sureyors, John Christy, Edward R. Alverson, Molly P. Dougherty, Susan C. Kolar, Clifford W. Alton, Susan M. Hawes, Gene Hickman, Jennifer A. Hiebler, Eric M. Nielsen

Institute for Natural Resources Publications

This classification of historical vegetation map units is based on General Land Office (GLO) surveyors' descriptions of vegetation, independent of modern vegetation classification. Vegetation data in the survey notes include species encountered along the survey lines, distances from section or quarter corners to "witness" or bearing trees, diameters of witness trees, and general descriptions of vegetation along each line. The surveyors were usually consistent in differentiating stands with dissimilar structure or composition, and they routinely segregated forest (“timber”), savanna ("openings"), and woodland ("scattering timber") from prairie. Today, these structural classes are often segregated by percent canopy cover or stand density, …

Inter- And Intra-Individual Variation In Predator-Related Behavioral Plasticity Expressed By Female Green Swordtails (Xiphophorus Hellerii), Rachael A. Disciullo

School of Biological Sciences: Dissertations, Theses, and Student Research

Phenotypic plasticity is the ability of one genotype to express multiple phenotypes under variable environments. Behavioral plasticity is a type of phenotypic plasticity in which individuals adjust behavior in response to changes in environment. Often, behavioral plasticity is studied at the level of the population, rather than at the level of the individual. Further, few studies have considered the effect of individual traits, such as size and age, on the expression of behavioral plasticity, or, how individual plasticity may be correlated across different contexts. In this study, we used female green swordtails (Xiphophorus hellerii) to test the effects …

Resiliency And Collapse: Lake Trout, Sea Lamprey, And Fisheries Management In Lake Superior, Nancy Langston

Michigan Tech Publications, Part 1

No abstract provided.

Review: Interspecies Ethics By Cynthia Willett, Thomas E. Randall

Between the Species

This paper provides a review of Cynthia Willett's book Interspecies Ethics. Willett aims to outline the beginnings of biosocial eros ethics – an ethical outline that sketches the potentiality of a cross-species cosmopolitan ideal of compassion (agape), derived through acknowledging and emphasizing the existence of spontaneous, playful interaction between social animals. Though this book is recommended for offering an innovative framework from which to explore the possibility of non-anthropocentric cross-species ethic, readers should be wary of expecting to find a fully-fledged moral program detailing how this would work.

Nitrogen Biogeochemistry In Binghamton, Ny, A Medium-Sized Urban Ecosystem, Stephanie Craig

Graduate Dissertations and Theses

Humans have altered nitrogen (N) cycling on a global scale, and elevated nitrogen levels are characteristic of urban ecosystems. The major reasons that N is higher in cities include imports of food, fuel and fertilizer. High N export from both point- and nonpoint-sources is common in large cities. While N cycling has been studied in large urban areas, less is known about its cycling in medium-sized cities, such as Binghamton, N.Y. We found that point-source N exported from the Binghamton-Johnson City Wastewater Treatment Plant (B-JC WWTP) was greater than nonpoint-source N exported from eight urban streams to the Susquehanna River, …

Two Complete Mitochondrial Genomes From Praticolella Mexicana Perez, 2011 (Polygyridae) And Gene Order Evolution In Helicoidea (Mollusca, Gastropoda), Russell L. Minton, Marco A. Martinez Cruz, Mark L. Farman, Kathryn E. Perez

Plant Pathology Faculty Publications

Helicoidea is a diverse group of land snails with a global distribution. While much is known regarding the relationships of helicoid taxa, comparatively little is known about the evolution of the mitochondrial genome in the superfamily. We sequenced two complete mitochondrial genomes from Praticolella mexicana Perez, 2011 representing the first such data from the helicoid family Polygyridae, and used them in an evolutionary analysis of mitogenomic gene order. We found the mitochondrial genome of P. mexicana to be 14,008 bp in size, possessing the typical 37 metazoan genes. Multiple alternate stop codons are used, as are incomplete stop codons. Mitogenome …