Ecology and Evolutionary Biology Commons^™

Phylogeography Unplugged: Comparative Surveys In The Genomic Era, Brian W. Bowen, Kartik Shanker, Nina Yasuda, Maria Celia Malay, Sophie Von Der Heyden, Gustav Paulay, Luiz A. Rocha, Kimberly A. Selkoe, Paul H. Barber, Suzanne T. Williams, Harilaos A. Lessios, Eric D. Crandall, Giacomo Bernardi, Christopher P. Meyer, Kent E. Carpenter, Robert J. Toonen

Biological Sciences Faculty Publications

In March 2012, the authors met at the National Evolutionary Synthesis Center (NESCent) in Durham, North Carolina, USA, to discuss approaches and cooperative ventures in Indo-Pacific phylogeography. The group emerged with a series of findings: (1) Marine population structure is complex, but single locus mtDNA studies continue to provide powerful first assessment of phylogeographic patterns. (2) These patterns gain greater significance/power when resolved in a diversity of taxa. New analytical tools are emerging to address these analyses with multi-taxon approaches. (3) Genome-wide analyses are warranted if selection is indicated by surveys of standard markers. Such indicators can include discordance between …

Latitude And Environmental Pressure: Their Impact On Carapace Morphology In Three Species Of Fiddler Crabs (Genus Uca) Across The Atlantic Ocean, Katherine Susannah Mary Thomas

Honors Program Theses

Among semi-terrestrial fiddler crabs, three species from the subgenus Uca (sensu stricto) appear to be basal in the phylogeny of the genus: Uca major (Herbst 1782-1804), Uca maracoani (Latreille 1802-1803) and Uca tangeri (Eydoux 1835). These species evolved vicariantly as tectonic plates separated to form the Atlantic Ocean. Currently, the three species, found in Africa, South America, and the Caribbean, exhibit a high affinity for their respective tectonic plates. Inter- and intra-specific variation in carapace shape was assessed using geometric morphometrics to analyze 12 surface landmarks in the three species. In 314 female specimens, surficial coordinates were superimposed, standardized, and …

First Report Of Satellite Males During Breeding In Leptodactylus Latrans (Amphibia, Anura), Gabriel Laufer, Noelia Gobel, José M. Mautone, María Galán, Rafael O. De Sá

Biology Faculty Publications

Individual males can adopt alternative mating tactics. The occurrence of satellite males is a common behaviour across anuran taxa (e.g., Lithobates clamitans, Wells, 1977; Anaxyrus cognatus, Krupa, 1989; Dendropsophus ebraccatus, Miyamoto and Cane, 1980; Rhinella crucifer, Forester and Lynken, 1986). Satellite males take peripheral positions to calling males, and adopt alternate mating tactics in an attempt to intercept females that are attracted to calling males (Wells, 2007) to increase their own mating success. Satellite males could have an inexpensive form of mate-locating, avoiding predators, and saving energy (Arak, 1983). Furthermore, this strategy could play an important role in the genetic …

Ionic Liquid Extraction Unveils Previously Occluded Humicbound Iron In Peat Porewater, Timothy J. Veverica

Dissertations, Master's Theses and Master's Reports - Open

Extracellular iron reduction has been suggested as a candidate metabolic pathway that may explain a large proportion of carbon respiration in temperate peatlands. However, the o-phenanthroline colorimetric method commonly employed to quantitate iron and partition between redox species is known to be unreliable in the presence of humic and fulvic acids, both of which represent a considerable proportion of peatland dissolved organic matter. We propose ionic liquid extraction as a more accurate iron quantitation and redox speciation method in humic-rich peat porewater. We evaluated both o-phenanthroline and ionic liquid extraction in four distinct peatland systems spanning a gradient of physico-chemical …

Beyond Roots Alone: Novel Methodologies For Analyzing Complex Soil And Minirhizotron Imagery Using Image Processing And Gis Tools, Justina A. Silva

Dissertations, Master's Theses and Master's Reports - Open

Quantifying belowground dynamics is critical to our understanding of plant and ecosystem function and belowground carbon cycling, yet currently available tools for complex belowground image analyses are insufficient. We introduce novel techniques combining digital image processing tools and geographic information systems (GIS) analysis to permit semi-automated analysis of complex root and soil dynamics. We illustrate methodologies with imagery from microcosms, minirhizotrons, and a rhizotron, in upland and peatland soils. We provide guidelines for correct image capture, a method that automatically stitches together numerous minirhizotron images into one seamless image, and image analysis using image segmentation and classification in SPRING or …

Patterns Of Maximum Body Size Evolution In Cenozoic Land Mammals: Eco-Evolutionary Processes And Abiotic Forcing, Juha J. Saarinen, Alison G. Boyer, James H. Brown, Daniel P. Costa, S.K. Morgan Ernest, Alistair R. Evans, Mikael Fortelius, John L. Gittleman, Marcus J. Hamilton, Larisa E, Harding, Kari Lintulaakso, S. Kathleen Lyons, Jordan G. Okie, Richard M. Sibly, Patrick R. Stephens, Jessica Theodor, Mark D. Uhen, Felisa A. Smith

School of Biological Sciences: Faculty Publications

There is accumulating evidence that macroevolutionary patterns of mammal evolution during the Cenozoic follow similar trajectories on different continents. This would suggest that such patterns are strongly determined by global abiotic factors, such as climate, or by basic eco-evolutionary processes such as filling of niches by specialization. The similarity of pattern would be expected to extend to the history of individual clades. Here, we investigate the temporal distribution of maximum size observed within individual orders globally and on separate continents. While the maximum size of individual orders of large land mammals show differences and comprise several families, the times at …

Effects Of Instream Habitat Restoration On Macroinvertebrate And Fish Communities In A Small Midwestern Stream, Manisha Pant

Masters Theses

Although millions of dollars are spent annually on stream habitat restoration, the biological responses to these restorations are rarely monitored. I assessed the impact of habitat enhancement on fish and macroinvertebrate abundance and diversity in a small Midwestern stream. Fish and macroinvertebrate communities were sampled annually in two restored and two unrestored sites beginning two years before and continuing four years after restoration. Habitat heterogeneity increased in the restored sites following the restoration, but there were no significant changes in most macroinvertebrate and fish community indices. Macroinvertebrate composition was significantly different between spring and fall, but in general, assemblages within …

Recognition Of Two New Species Of Freshwater Crabs From The Seychelles Based On Molecular Evidence (Potamoidea: Potamonautidae)., Neil Cumberlidge, Savel Regan Daniels Phd

Journal Articles

The Afrotropical freshwater crab genus Seychellum is endemic to the granitic Seychelles in the Indian Ocean (Mahé, Silhouette, Praslin, La Digue and Frégate). Here we describe two new cryptic species of Seychellum that represent two evolutionarily separate lineages of a previously monotypic genus. This raises to three the number of species of freshwater crabs known from Seychelles. Each species is endemic to either one island (Silhouette) or to a pair of islands (Mahé and Frégate, or Praslin and La Digue). The three species can be clearly distinguished as separate lineages by DNA analysis, haplotyping and examination of gonopod characters. The …

Wetlands And Greenhouse Gas Fluxes: Causes And Effects Of Climate Change – A Meta-Analysis, Robert E. Ventura

Pomona Senior Theses

Climate change is one of the largest problems facing this generation. Anthropogenically caused increases of greenhouse gas emissions is a significant culprit to this problem. Although the obvious problems such as cars, industry, and urbanism garnish a significant amount of the criticism, natural sources such as wetlands are also beginning to contribute to this issue. This is becoming increasingly significant as wetlands shift from being sinks of greenhouse gases to becoming sources as various anthropogenic impacts, including global warming itself, begin to affect the health of the wetlands. The aim of this project is to look at four common types …

Depredation Of Diamondback Terrapin (Malaclemys Terrapin) Nests In North Inlet, Sc: Nest Predator Community And The Cues Used By Raccoons To Locate Nests, Samuel Al Buzuleciu Ii

Electronic Theses and Dissertations

Predation on diamondback terrapin eggs has been studied in several terrapin populations across their broad geographic range; however, nest predators have not been studied in South Carolina. Objectives of this project were two-fold: first, identify predators of diamondback terrapin eggs in North Inlet, SC; and second, determine the source of olfactory cue(s) used by raccoons to locate terrapin nests. Terrapin nest predators were identified using a combination of camera traps, visual surveys and trackboards. Raccoons were dominant nest predators and depredated 347 of 349 (combined natural and simulated) terrapin nests during the 2013 nesting season. We identified the source of …

Assessment Of Bryophyte Communities Along The Waccamaw River, Sc, Christine Elizabeth Raczka

Electronic Theses and Dissertations

The focus of this study was to determine the bryophyte communities present along the Waccamaw River, South Carolina and determine if there are any environmental constraints affecting bryophyte diversity. Another aspect of this study was to determine if bryophyte communities are bioindicators for dissolved inorganic nutrients in the Waccamaw River. A total of 1050 bryophyte specimens were collected over the course of the study. Twelve genera were identified and consisted of thirteen moss species and one liverwort species. The bryophyte species were collected at seven sites along the Waccamw River in a nested sampling design which assessed the bryophytes growing …

Relationships Between Isolating Land Use And Amphibian Populations In Sub-Boreal Peatlands Of The Midwestern United States, Jeana Rose Albers

All Graduate Theses, Dissertations, and Other Capstone Projects

Successful conservation efforts of amphibians depend on the knowledge of habitat preferences because the biggest threat to amphibian populations is considered to be habitat loss. Sub-boreal peatlands in the Midwest may be a refuge for amphibian populations, but little is known about the flora and fauna of these peatlands. My study examined amphibian species richness and species diversity in 17 sub-boreal peatlands in Minnesota and Wisconsin in 2011 and 2012. I assessed the relationship between land use of lands adjacent to peatlands and use of those peatlands by amphibian populations at three spatial scales by examining landscapes surrounding peatlands in …

The Movement Ecology Of Seagrasses, Kathryn Mcmahon, Kor-Jent Van Dijk, Leonardo Ruiz-Montoya, Gary A. Kendrick, Siegfried L. Krauss, Michelle Waycott, Jennifer Verduin, Ryan Lowe, John Statton, Eloise Brown, Carlos Duarte

Research outputs 2014 to 2021

A movement ecology framework is applied to enhance our understanding of the causes, mechanisms and consequences of movement in seagrasses: marine, clonal, flowering plants. Four life-history stages of seagrasses can move: pollen, sexual propagules, vegetative fragments and the spread of individuals through clonal growth. Movement occurs on the water surface, in the water column, on or in the sediment, via animal vectors and through spreading clones. A capacity for long-distance dispersal and demographic connectivity over multiple timeframes is the novel feature of the movement ecology of seagrasses with significant evolutionary and ecological consequences. The space–time movement footprint of different life-history …

Thermal Ecology Of Urosaurus Ornatus (Ornate Tree Lizard), In The Northern Chihuahuan Desert On Indio Mountains Research Station, Texas, Julia Sandoval Alva

Open Access Theses & Dissertations

The main goal of this study was to determine the thermal ecology of the small tree lizard Urosaurus ornatus in a Chihuahuan Desert landscape. The study site was located at Indio Mountains Research Station (IMRS), Hudspeth County, Texas. We obtained body temperature (Tb) data on 385 lizards collected from April 2007 to June 2014 during the active period using a cloacal thermometer. Additionally, we recorded air temperature (Ta) and substrate temperature (Ts) of lizard microhabitats at the time of capture, and the operative temperature of lizard models left in the sun and shade from May to September 2014. My results …

Revision Of The Ant Genus Bothroponera (Hymenoptera: Formicidae: Ponerinae) From The African Continent, Abdulmeneem Joma

Open Access Theses & Dissertations

Abstract (chapter 1)

The Afrotropical ants in the genus Bothroponera include the pumicosa, talpa, and sulcata species complexes. Species in the Bothroponera pumicosa species complex are mainly distributed in the southern part of Africa. This group of ants is characterized by having coarsely foveolate sculpture and by having either a raised a "v" or "u" shaped anterior medial area of the clypeus (anteclypeus), with or without a carina. The mandibles have 7 teeth in the majority of species and 8 teeth in the others. The eyes are relatively large. The scapes usually do not reach the posterior lateral corner of …

Geoecology, Nishanta Rajakaruna, S. Boyd

Faculty Publications, Biological Sciences

No abstract provided.

Integrated Assessment Of Biological Invasions, Inés Ibáñez, Jeffrey M. Diez, Luke P. Miller, Julian D. Olden, Cascade J.B. Sorte, Dana M. Blumenthal, Bethany A. Bradley, Carla M. D'Antonio, Jeffrey S. Dukes, Regan I. Early, Edwin D. Grosholz, Joshua J. Lawler

Faculty Publications, Biological Sciences

As the main witnesses of the ecological and economic impacts of invasions on ecosystems around the world, ecologists seek to provide the relevant science that informs managers about the potential for invasion of specific organisms in their region(s) of interest. Yet, the assorted literature that could inform such forecasts is rarely integrated to do so, and further, the diverse nature of the data available complicates synthesis and quantitative prediction. Here we present a set of analytical tools for synthesizing different levels of distributional and/or demographic data to produce meaningful assessments of invasion potential that can guide management at multiple phases …

Survival And Recovery Following Wildfire In The Southern Range Of The Coast Redwood Forest, Rachel Lazzeri-Aerts, Will Russell

Faculty Publications, Environmental Studies

Fire plays a central role in determining structure, composition, and recruitment in many forest types. In coast redwood forests, the role of fire is not well understood and scant literature exists on post-fire response, particularly in the southern part of the range. In order to better understand patterns of survival and recruitment following fire for coast redwood (Sequoia sempervirens [lamb. ex D. Don] Endl.) and associated tree species, three sites in the Santa Cruz Mountains, California, USA, were sampled following wildfire. Randomly selected 10 m diameter plots were used to collect data on survivorship and post fire regeneration in order …

Life Histories, Diets, And Secondary Production Of Odonata Along A Temperature Gradient On The Copper River Delta, Alaska, Nicole Emilie Furlan

Master's Theses

Dragonflies (Odonata: Epiprocta) and damselflies (Odonata: Zygoptera) are a conspicuous aspect of the biota in ponds on southcentral Alaska's Copper River Delta (CRD). Odonate densities, secondary production, and diets were assessed in sixteen ponds classified by delta region (east vs. west) and landscape type (outwash plain (OP) vs uplifted marsh (UM)).

Enallagma boreale (Coenagrionidae) comprised 48.5% of collected odonates. Leucorrhinia hudsonica (Libellulidae) and Aeshna juncea (Aeshnidae) comprised 36.6% and 10.4% of collected odonates, respectively. L. hudsonica densities and secondary production were significantly higher (p<0.001) in west UM ponds than in other pond types. Ostracods (Ostracoda) and water boatmen (Corixidae) dominated west OP A. juncea diets. Midge larvae (Chironomidae) dominated A. juncea diets in remaining pond types, occurring in 68% of foreguts. 27% of A. juncea foreguts demonstrated intraguild predation, and 6% of foreguts demonstrated cannibalism. Foreguts containing threespine stickleback (Gasterosteus aculeatus) revealed A. juncea's apex predator role in CRD ponds.

History Of Freshwater Invasions In Illinois: Learning From The Past To Inform The Future, Abigail Jacobs

Master's Theses

Rates of introduction and spread of non-native species continue to increase worldwide, with freshwater ecosystems highly impacted. Many non-native species crossed between the Great Lakes and Mississippi watersheds by traveling through waterways in Illinois. I assembled a comprehensive database of occurrences of aquatic non-native species (n=99) in Illinois inland waters. The arrival of non-native species accelerated since 1873. The Great Lakes Basin was the main source of established species into Illinois. From 1990-2012 the dominant vector was unintentional release of established species non-native to North America. Sixty of the 99 introduced species established. Eighteen established species had high or very …

Denitrification In Urban Coastal Environments: A Functional Gene Study, Samantha Denise Lindemann

Master's Theses

Eutrophication is a major anthropogenic stressor on aquatic ecosystems worldwide. Jamaica Bay is located in the southeastern portion of New York City, NY (NYC). Like many other estuaries, Jamaica Bay is impacted by anthropogenic N inputs from various sources. Despite eutrophic conditions, improvements in water quality over the last few decades have prompted government agencies to promote oyster restoration to help reduce anthropogenic N in NYC waters. The effect of eastern oysters on sediment bacterial communities responsible for denitrification in Jamaica Bay was previously unknown. Those samples exposed to oysters were predicted to have high denitrification gene abundances, and thus …

Generalist And Specialist Pollination Syndromes: When Are They Favoured? A Theoretical Approach To Predict The Conditions Under Which A Generalist Or Specialist Pollination Syndrome Is Favoured., Tyler L. Poppenwimer

Senior Independent Study Theses

No abstract provided.

Lineage-Specific Transcriptional Profiles Of Symbiodinium Spp. Unaltered By Heat Stress In A Coral Host, Daniel J. Barshis, Jason T. Ladner, Thomas A. Oliver, Stephen R. Palumbi

Biological Sciences Faculty Publications

Dinoflagellates of the genus Symbiodinium form an endosymbiosis with reef building corals, in which photosynthetically derived nutrients comprise the majority of the coral energy budget. An extraordinary amount of functional and genetic diversity is contained within the coral-associated Symbiodinium, with some phylotypes (i.e., genotypic groupings), conferring enhanced stress tolerance to host corals. Recent advances in DNA sequencing technologies have enabled transcriptome-wide profiling of the stress response of the cnidarian coral host; however, a comprehensive understanding of the molecular response to stress of coral-associated Symbiodinium, as well as differences among physiologically susceptible and tolerant types, remains largely unexplored. Here, …

Sarpa Salpa Herbivory On Shallow Reaches Of Posidonia Oceanica Beds, Latina Steele, Kelly M. Darnell, Just Cebrián, Jose Luis Sanchez-Lizaso

Biology Faculty Publications

Sarpa salpa herbivory on shallow reaches of Posidonia oceanica beds.— Here, we examined the temporal and small–scale spatial variability of grazing by the herbivorous fish Sarpa salpa on shallow beds of the temperate seagrass Posidonia oceanica. Herbivory intensity expressed as the percent of leaf area taken by fish bites was higher in September 2006 than in February 2007, and at 0.5 m than at 1.5 m during both sampling times. All S. salpa feeding at the shallow locations studied were juveniles, with bite sizes ranging from 0.03 to 0.62 cm2. Juveniles feeding at 1.5 m were larger in February 2007 …

Effects Of Audible Human Disturbance On Koala (Phascolarctos Cinereus) Behavior In Queensland, Australia And Implications For Management, Galina Eugenia Kinsella

Honors Theses and Capstones

As the growing human population continues to encroach on wildlife habitat, species are forced to adapt in order to survive. In addition to causing habitat loss, human presence can create more subtle disturbances, such as noise pollution, that disrupt wildlife behavior. Adapting to human presence is particularly difficult for species with specialized resource needs or low mobility. The koala (Phascolarctos cinereus), a national icon of Australia, meets both these criteria. Koalas were once abundant throughout Australia, but are now classified as “threatened.” Habitat loss is at least partly responsible for this decline, but anthropogenic noise may also be …

Prescribed Fire And Oak Sapling Physiology, Demography And Folivore Damage In An Ozark Woodland, D. Alexander Wait, Doug P. Aubrey

Biology: Faculty Publications

Proceedings from the 2014 Central Hardwood Forest Conference in Carbondale, IL. The published proceedings include 27 papers and 47 abstracts pertaining to research conducted on biofuels and bioenergy, forest biometrics, forest ecology and physiology, forest economics, forest health including invasive species, forest soils and hydrology, geographic information systems, harvesting and utilization, silviculture, and wildlife management.

The Prevalence And Effect Of Wolbachia Infection On The Brown Widow Spider (Latrodectus Geometricus), Brittany Dane' Arrington

College of Graduate Studies: Theses & Dissertations

Wolbachia was recently identified in the Brown Widow Spider (Latrodectus geometricus). This symbiont has not previously been found in this genus, therefore the consequences on the host’s population dynamics are unknown. The frequency of endosymbiont infection can provide insight into the population dynamics of the host as this bacteria is known to alter host life history. In my 1^st chapter I determine the prevalence of Wolbachia pipentis infection in in the Brown Widow Spider (Latrodectus geometricus) from five locations in the Southeastern United States. Infection frequency differed significantly among sampling locations, ranging from 20% to …

Temporal Patterns Of Aquatic Macroinvertebrate Communities And Organic Matter Standing Stock Availability In A Coastal Floodplain (Altamaha River, Georgia), Erica L. Johnson

College of Graduate Studies: Theses & Dissertations

River floodplain habitats of the Southeastern United States are sites of high biological productivity that rely on a predictable flooding event as a keystone process. This study took place in a river-floodplain area of the Altamaha River, an unimpounded large-order river in the Coastal Plains region of the US. This study aims to investigate how aquatic macroinvertebrate communities changed over the course of the annual flood pulse. I predicted that the communities would be different and that the differences would be driven by hydrology at the main stem and organic matter standing stock availability. I took quantitative samples of benthic …

Phenotypic Variation In Native North American And Invasive Chinese Populations Of Plantago Virginica, Teresa E. Popp

College of Graduate Studies: Theses & Dissertations

Alien plant species can cause significant economic and biological destruction by invading new environments and outcompeting native species. Through experimental research, the mechanisms by which these species invade can be better understood and applied to their management. Plantago virginica is a perennial herb, native to North America that has recently invaded China. It has been known to reduce crop growth and harbor diseases in the introduced range. A common garden study was conducted at the Georgia Southern University greenhouse, comparing twenty populations of P. virginica from both the native North American and invasive Chinese ranges. I examined if there were …

Epistasis In Predator-Prey Relationships, Iuliia Inozemtseva

College of Graduate Studies: Theses & Dissertations

Epistasis is the interaction between two or more genes to control a single phenotype. We model epistasis of the prey in a two-locus two-allele problem in a basic predator- prey relationship. The resulting model allows us to examine both population sizes as well as genotypic and phenotypic frequencies. In the context of several numerical examples, we show that if epistasis results in an undesirable or desirable phenotype in the prey by making the particular genotype more or less susceptible to the predator or dangerous to the predator, elimination of undesirable phenotypes and then genotypes occurs.