Ecology and Evolutionary Biology Commons^™

Climate Change Drives Outbreaks Of Emerging Infectious Disease And Phenological Shifts, Jeremy Cohen

USF Tampa Graduate Theses and Dissertations

Climate change is expected to impact species by altering infectious disease outcomes, modifying community composition, and causing species to shift their phenology, body sizes and range distributions. However, the outcomes of these impacts are often controversial; for example, scientists have debated whether climate change will exacerbate emerging infectious disease and which species are at greatest risk to advance their phenology. There reason for these controversies may be that climate change is impacting diverse processes across a wide range of ecological scales, as the interplay between fine-scale processes and broad-scale dynamics can often cause unpredictable changes to the biosphere. Therefore, it …

Influence Of Water Quality On Stony Coral Diversity And Net Community Productivity In The Florida Keys, María Vega-Rodriguez

USF Tampa Graduate Theses and Dissertations

Worldwide, coral cover has declined at rates that have often exceeded 5% per year since the 1980’s. Populations of scleractinians (stony corals) in the Florida Keys reef tract have declined as well, with some communities declining at rates > 3% per year. Decreased water quality (e.g., steady increases in the ocean water temperatures and increased pollution, nutrients, or water turbidity due to coastal runoff) are commonly attributed to this decline. But actual linkages between variability and trends in these environmental parameters, and in stony coral diversity and ecosystem functions such as net community production, have not yet been well characterized.

With …

An Ecosystem-Based Approach To Reef Fish Management In The Gulf Of Mexico, Michelle D. Masi

USF Tampa Graduate Theses and Dissertations

Fisheries managers have the potential to significantly improve reef fish management in the Gulf of Mexico through the use of ecosystem-based approaches to fisheries management. Ecosystem-based approaches are needed to address the effects of fishing on trophodynamic interactions, to better account for ecosystem-scale processes in model projections, and to recognize the short and long-term biomass tradeoffs associated with making regulatory choices. My research was concentrated around three objectives: (1) characterizing the trophodynamic interactions between Gulf of Mexico fishes, in order to construct an invaluable tool (a Gulf of Mexico Atlantis model) to be used in ecological hypothesis testing and policy …

Resource Use Overlap In A Native Grouper And Invasive Lionfish, Joseph Schmidt Curtis

USF Tampa Graduate Theses and Dissertations

Invasive species can severely disrupt biological communities through their interactions with native organisms, yet little is known about the response of marine predators to the establishment of a competitive invasive fish. In the western Atlantic, invasive Indo-Pacific lionfishes (Pterois spp.) may represent a novel competitor to several commercially and ecologically important native species. However, there is a scarcity of empirical research documenting comparative resource use of cohabitant lionfish and native fishes, as well the physiological consequences that may result from interspecific interactions with the invasive species. For this thesis, I conducted two studies designed to elucidate the strength …

Importance Of Forest Structure For Amphibian Occupancy In North-Central Florida: Comparisons Of Naturally Regenerated Forests With Planted Pine Stands, Christopher J E Haggerty

USF Tampa Graduate Theses and Dissertations

Once dominant, longleaf pine forests of the southeastern United States have been modified by 97 percent, resulting in several animal species being listed as endangered and threatened. Pine plantation silviculture (tree plantings) now occupies half of the original longleaf range where several animal species of conservation concern have experienced recent local population declines. In North America, the accepted practice of pine plantations is to plant pines densely in rows for wood production. Given that land use is considered a primary local driver for the 30% of amphibian species currently at risk of extinction, and planted pine is predicted to expand …

The Archaeopalynology Of Crystal River Site (8ci1), Citrus County, Florida, Kendal Jackson

USF Tampa Graduate Theses and Dissertations

The Woodland-period (ca. 1000 B.C. to A.D. 1050) fisher-hunter-gatherers of the Crystal River drainage on Florida’s Big Bend Coast are well known among southeastern archaeologists for their elaborate shell mound architecture, maritime lifeway, and exotic exchange goods. Recent archaeological investigations at the Crystal River site have employed high-resolution topographic mapping, geophysical surveys, trench excavations, and coring to model the temporality of mound construction and occupation at the site; this work has set the stage for subsequent research focusing on community structure, resource extraction, and human-ecosystem dynamics. However, like many central and north peninsular Gulf Coast sites, our understanding of Crystal …

Feeding Patterns And Trophic Food Web Dynamics Of Armases Cinereum Across A Mangrove/Upland Ecotone, Erin Paige Kiskaddon

USF Tampa Graduate Theses and Dissertations

The feeding ecology of a common saltmarsh crab, Armases cinereum (Armases), was investigated to determine how habitat (mangrove vs. ecotone, natural mangrove vs. modified mangrove fringe) influenced this species’ feeding behavior and trophic ecology in its southwestern Florida, USA, distribution. In the laboratory, Armases’ preference for mangrove material was examined using leaves of three mangrove species (Avicennia germinans, Laguncularia racemosa, and Rhizophora mangle) and leaves of different degradation levels (fresh, senescent, and partially-decomposed). Leaf material from A. germinans was preferentially consumed over the other taxa at fresh and partially-decomposed levels of leaf decay. When Armases were …

Molecular Response Of Spartina Alterniflora To The Deepwater Horizon Oil Spill, Mariano Alvarez

USF Tampa Graduate Theses and Dissertations

Although the “genome as a blueprint” metaphor has been pervasive in biology, recent advances in molecular biology have revealed a complex network of regulatory machinery that dynamically regulated molecular processes in response to environmental conditions. However, these patterns, as well as the evolutionary processes that underlie them, remain understudied in natural conditions. In 2010, the Deepwater Horizon oil spill released an estimated 4.9 million barrels of oil into the Gulf of Mexico, making landfall on salt marsh habitat dominated by the foundation species Spartina alterniflora. Despite the severe impacts to phenotype and fitness, S. alterniflora proved remarkably resilient in …

Drivers Of Immune Cost And Implications For Host Protection From Parasites, Amber Jasmine Brace

USF Tampa Graduate Theses and Dissertations

Among species, populations, and individuals, there exists a tremendous amount of variation in how hosts respond to, and are thus protected from parasites. Such variation inevitably affects host-parasite dynamics and ultimately how parasites will move through and evolve in communities. A likely factor in the diversity of immune responses seen in nature are the costs associated with activation of the immune system upon exposure to parasites. Costs can manifest in many ways, including changes in resource usage or metabolism, self-damage from inflammatory reactions, lost opportunities (e.g., foraging reproduction), and often as tradeoffs with other physiological processes. However, we do not …

From Tolerance To Transmission: Linking Within-Individual To Community-Level Disease Processes, Sarah Catherine Burgan

USF Tampa Graduate Theses and Dissertations

Hosts have two main strategies for coping with infections: resistance and tolerance. Resistance is aimed at preventing or eliminating parasites, whereas the goal of tolerance is to maintain performance regardless of parasite burden. The balance between resistance and tolerance within a host may mediate host competence, or the propensity of a host to infect other hosts or vectors. Hosts with high tolerance and low resistance to an infection, for instance, may be highly competent and possess the greatest potential to act as superspreaders. These superspreading hosts will contribute disproportionately to transmission, thus posing the greatest risk to other hosts within …

Optimizing Methods For Extraction Of Organic Compounds From Molluscan Shells, Kaydee Jo West

USF Tampa Graduate Theses and Dissertations

Mollusk shells contain proteins within and between the crystals of calcium carbonate. These organic molecules play an important role in biomineralization and shell function, and their stable isotope ratios of carbon and nitrogen are also thought to record important ecological information about the animal's diet and nutrient sources. These proteins can be preserved for millions of years, offering potential insight into pre-anthropogenic ecological conditions. However, shell organics in older shells are typically recovered in reduced abundances due to leaching and remaining organics are often converted from insoluble proteins to soluble, free amino acids, making them difficult to detect and recover. …

Pollutants And Foraminiferal Assemblages In Torrecillas Lagoon: An Environmental Micropaleontology Approach, Michael Martinez-Colon

USF Tampa Graduate Theses and Dissertations

Torrecillas Lagoon in the North Coast of Puerto Rico has experienced extensive anthropogenic influence over the past 400 years. Elevated concentrations of Potential Toxic Elements (PTEs) have been reported in surficial sediments. The main goal of this dissertation was to implement in Puerto Rico the use of benthic foraminifers as a bioindicators of PTEs and to compare the impact of Cu(II) on field samples with results of experimental work using cultures.

Analyses included geochemical assessment for bulk and carbonate- soluble bioavailable concentrations of PTEs in surface, core and pore-water samples, as well as analyses of grain-size, Percent Total Organic Carbon …

Vegetative Responses To Hydrology And Ground Water Extraction In West-Central Florida Cypress Domes, Paul Thurman

USF Tampa Graduate Theses and Dissertations

The increasing demand for and limited supply of fresh water necessitates an understanding of how human actions affect aquatic ecosystems. Anthropogenic impacts to these ecosystems occur in many forms including eutrophication, invasive species removals, and hydrologic alterations. Ground water extraction is one such action that can dramatically impact wetland hydrology and is increasing in occurrence globally as clean surface water resources are exhausted. Despite the importance of ground water extraction to meet human demand, little information is available concerning the response of vegetation communities to chronic ground water extraction. Over extraction is known to result in reduced water levels and …

Novel Techniques In Chemical Ecology To Examine Life Histories In Fishes, Orian Tzadik

USF Tampa Graduate Theses and Dissertations

Diet and movements in fishes are often logistically challenging to study. Trace element and stable isotope analyses have advanced these fields considerably, but are still constrained by methodological impediments, such as the tendency towards lethal sampling. Studying endangered fishes is particularly challenging as representative samples are difficult to obtain. However, the information gained from such studies is often critical to the recovery of endangered fishes as knowledge of life history attributes has the potential to greatly influence the success of management strategies.

I tested the viability of using fin rays in fishes as a non-lethal approach to study diet and …

Acropora Habitat Evaluation And Restoration Site Selection Using A Species Distribution Modeling Approach, Katherine Wirt Ames

USF Tampa Graduate Theses and Dissertations

While populations of nearly all stony coral species along the Florida reef tract have exhibited decline, the most notable decline has occurred in the once-dominant acroporid species (Acropora cervicornis, A. palmata). Both species were listed in 2006 as threatened under the Endangered Species Act. This listing, combined with their continued decline, has resulted in large-scale restoration efforts throughout Florida and the Western Caribbean. Currently, there is little to no information regarding spatial prioritization of sites for these restoration efforts. The primary objective of this dissertation was to utilize species distribution modeling, informed by existing data from the …

Three-Dimensional Interstitial Space Mediates Predator Foraging Success In Different Spatial Arrangements, Stephen Gregory Hesterberg

USF Tampa Graduate Theses and Dissertations

Habitat structure modifies the strength of predator-prey interactions, but it remains unclear how to describe the three-dimensional spatial arrangement of structural components in a way that consistently predicts outcomes. Interstitial space may provide a useful target for measurement, but most studies use only two-dimensional methods to describe 3D space, limiting their predictive power. Using a novel technology to produce identical components, this study tests whether the 3D interstitial space of oyster shell mimics modifies the ability of blue crabs (Callinectes sapidus) to capture their mud crab prey (Eurypanopeous depressus) in mesocosms and a variety of reef-associated …

The Ecological Succession Of Mosquitoes Inhabiting Waste Tires In A Subtropical Swamp And Upland Forest In Central West Florida, Emily Thuong Nguyen Dinh

USF Tampa Graduate Theses and Dissertations

Literature has not yet seen a contribution involving the description of successional patterns of mosquitoes (Diptera: Culicidae) inhabiting discarded automobile tires in sylvan areas nor an investigation into the macro- and micro-environmental factors that may influence the seasonal shifts in species composition and abundance in that respective habitat. Waste tires in undeveloped forests are a hazard to human and animal health because they can support a population of vector mosquitoes. Locating productive waste tire mosquito habitats is problematic in wooded areas but is crucial for diminishing pathogen transfer in areas where humans have regular access to forests because of possible …

North American River Otter (Lontra Canadensis) Presence And Habitat Analysis In Florida As Compared To Historical Data, Samantha Wilber

USF Tampa Graduate Theses and Dissertations

North American river otters are considered common in the state of Florida, but their populations have not been studied since the 1980’s. Since that time, Florida’s human population has more than doubled, and many natural areas of Florida have been developed. The aim of this study was to determine the presence or absence of river otters at locations in Florida which they historically inhabited. Forty-six sample sites where otters were historically found were obtained from the Florida Museum of Natural History Mammals Master Database (FMNH MMD). These sites were condensed to two focus areas, in and around Alachua and Collier …

Identifying Humanized Ecosystems: Anthropogenic Impacts, Intentionality, And Resource Acquisition At Crystal River (8ci1) And Roberts Island (8ci41), Charles Trevor Duke

USF Tampa Graduate Theses and Dissertations

The impact of human activity on ecosystems is an issue at the forefront of global concern. Marine ecosystems are a particular concern, given their importance for human sustenance. Through the removal of species that are highly susceptible to the effects of overfishing, global fisheries have been driven to near collapse in recent decades. The long-term effects of such practices has resulted in declines in mean trophic level of aggregate fish catches over time, as well as decreasing diversity of species available for regular harvest (Jackson et al. 2001; Pauly et al. 1998). These supposedly “modern” problems have been recently identified …

Emergent Insect And Neotropical Migratory Bird Interactions And Responses To Habitat, Hydrology, And Progressive Urbanization In The Tampa Bay Region, Nathaniel Lee Goddard

USF Tampa Graduate Theses and Dissertations

The growing human population threatens the many of the earth’s biological systems. In the last 600 years extinction rates risen from 1 extinction per million species per year (E/MSY) in the 1400’s to 50 E/MSY today. During this time period 1.5% of all known birds have gone extinct, because they could not adapt quickly enough to human mediated changes. The goal of this dissertation was to determine how urbanization and anthropogenic services needed to support urban areas impact cypress dome wetland aquatic insect and migratory bird populations that depend on them. In Central Florida cypress dome hydroperiods are driven by …

A Bat-Guano-Derived Δ15N And Δ13C Record Of Paleoenvironmental Change: Zidită Cave, Romania, Daniel Martin Cleary

USF Tampa Graduate Theses and Dissertations

Because nitrogen isotopes are fractionated along the soil-plant-insect-bat-guano pathway, it may be possible to reconstruct environmental and climatic changes reflected in the nitrogen isotopic composition of guano. A 1.5-m core of bat guano from Zidită Cave (western Romania) provides a record of climatic and anthropogenic influence on the regional nitrogen cycle and paleoenvironmental controls on nitrogen transforming processes. Increasing and decreasing trends of nitrogen isotopic composition (δ¹⁵N values) correspond well with changes in the influence of farming practices, deforestation, and forest expansion. These influences likely had a significant effect on the openness of the nitrogen cycle, resulting in …

Comparison Of Isotope-Based Biomass Pathways With Groundfish Community Structure In The Eastern Gulf Of Mexico, Sheri Ann Huelster

USF Tampa Graduate Theses and Dissertations

This study compared traditional community analysis with stable-isotope trophic analysis to define process-based trophic elements of community structure in the eastern Gulf of Mexico, and developed a predictive capability regarding changes to fish community structure that would be expected from increasing eutrophication. Specifically, it used an existing trawl survey program (SEAMAP) to compare invertebrate herbivore (sponge and sea urchin) isotopes with groundfish isotopes, and then compared the resulting spatial patterns with spatial variation in community structure, as identified by cluster analysis. The comparison was applied to seven NMFS survey zones that extended offshore from the Caloosahatchee River, FL northwest to …

Historical And Current Population Patterns Of The Staghorn Coral (_Acropora Cervicornis_) In Dry Tortugas National Park, Kaitlyn Lizza

USF Tampa Graduate Theses and Dissertations

Acropora cervicornis was once one of the dominant reef building corals of the Caribbean, Florida Keys, and Dry Tortugas (DRTO), but since the 1970’s populations have been decimated throughout their geographic range. Recently, a repopulation was documented through detailed benthic surveys conducted by the U.S. Geological Survey at three locations (Pulaski Shoal, East Key, and Loggerhead Key) within DRTO. Benthic surveys using the U.S Geological Survey’s Along-Track Reef Imaging System (ATRIS) revealed hundreds of previously undocumented colonies.

These discoveries have provided a unique data-set, allowing a comparison between the historical (1883, 1976) and contemporary distributions (2009, 2011) of A. cervicornis. …

Comparison Of Gastropod Assemblages From Natural And Phosphate Mine Lakes Of Central Florida, William A. Mailand

USF Tampa Graduate Theses and Dissertations

Investigations were made examining the relationships between gastropod species richness and abundance across 20 phosphate and 20 natural lakes in Central Florida. In additional to lake category, age of phosphate lakes was used to determine if phosphate lakes ever approximate natural lakes. Additional physical, chemical, and biological parameters, including chlorophyll a, Ca, secchi, phosphorous, conductance, fish predation, and recreational lake use were investigated in order to determine if they affected gastropods with lake age. Comparisons were also made between gastropod species richness and average abundance and two groups of dominant vegetation categories: Panicum, a structurally complex macrophyte, and Typha …

Impacts Of Agrochemical Pollution On Aquatic Communities And Human Disease, Neal T. Halstead

USF Tampa Graduate Theses and Dissertations

The global human population is expected to exceed 9 billion individuals by 2050, putting greater strain on the natural resources needed to sustain such a population. To feed this many people, some expect agricultural production will have to double and agrochemical use will have to increase anywhere from two- to five-fold relative to the turn of the century. Although industrial agriculture has provided many benefits to society, it has caused declines in biodiversity, both directly (e.g., through conversion of habitat) and indirectly (e.g., through contamination of adjacent natural habitats). Agricultural activity has also been linked to increased prevalence and intensity …

Variability In The Spatial And Temporal Patterns Of Larval Scombrid Abundance In The Gulf Of Mexico, Sennai Y. Habtes

USF Tampa Graduate Theses and Dissertations

Accurate fishery-independent methods for assessing the abundance of marine fish stocks are important tools for proper pelagic fisheries management. The review and improvement of standardized sampling methods used in fisheries-independent sampling, and the establishment of improved models of abundance and population dynamics utilizing novel statistical techniques for fisheries management will further improve our understanding of the way in which marine fish stocks vary spatially and temporally. One of the most important and longest running surveys of fisheries-independent data in the Southeastern United States is the spring ichthyoplankton survey conducted through the Southeast Area Mapping and Assessment Program (SEAMAP).

These surveys …

Eukaryotic Gene Expression Patterns Of Microorganisms In The Amazon River Plume Parallel The Biogeochemistry Of Plume Waters, Brian L. Zielinski

USF Tampa Graduate Theses and Dissertations

Unraveling the microbiological processes that occur as water travels from a river's mouth into the ocean is critical to understanding the role of river plumes in global biogeochemical cycles. Metranscriptomics, the gene expression of a whole community of organisms, was utilized to examine six stations along the Amazon River Plume (ARP) in 2010 to test thehypothesis that there were measurable differences in gene expression for key biogeochemical genes along the ARP. This body of work focuses on methods developed to identify which genes are biogeochemically important for a particular environment along extreme salinity, nutrient and community gradients in the ARP, …

Ontogenetic Diet Shifts And Prey Preference Of A Generalist Predatory Fish, Brittany Jalene Scharf

USF Tampa Graduate Theses and Dissertations

Marine ecosystems are highly dynamic and contain a diverse faunal assemblage that are subject to various natural and anthropogenic variability. Globally, seagrass ecosystems are located adjacent to coastal areas that are heavily impacted by human development and urbanization potentially altering the community structure within these ecosystem. Complex food webs connect many components of these systems, often in unexpected ways, and are ultimately based on one of two pathways: benthic (i.e., seagrass, epiphytes, microalgae, detritus) and planktonic (i.e., phytoplankton). Understanding the pathway which the food web is based gives further insight regarding the biological balance of the ecosystem; thus it is …

A Multi-Scale Approach To Study Predator-Prey Interactions And Habitat Use Of Pinfish, Lagodon Rhomboids, Dinorah Helena Chacin

USF Tampa Graduate Theses and Dissertations

Biological processes like species interactions and patterns such as abundance and distribution observed in nature can vary depending on the scale at which the subject of interest is evaluated. Knowing that there is no single natural scale at which systems should be studied, in this thesis, I conducted a series of basic and applied ecological approaches in order to examine the phenomena that can occur at different scales of space, time, and ecological organization.

Species abundances can vary over large spatial and temporal scales. By studying the habitat use of an abundant species, which uses a wide range of habitats, …

Using Otolith Elemental Composition To Track The Habitat Use, Movements, And Life History Patterns Of Common Snook (Centropomus Undecimalis) And Red Drum (Sciaenops Ocellatus) In The Tampa Bay Estuary, Holly Jacqueline Rolls

USF Tampa Graduate Theses and Dissertations

Knowledge of fish habitat use and connectivity is critical for understanding the structure and dynamics of fish populations and, therefore, necessary for the implementation of successful fisheries management strategies. Tagging is an effective means of providing such information, and the elemental composition contained within fish otoliths is increasingly being used as a natural tag. The chemical composition of otoliths reflects the incorporation of elements from different water bodies and can thus be used to understand the habitat use, movements, and life history patterns of fishes. To assess the applicability of otolith elemental composition as a tagging technique within the Tampa …