Ecology and Evolutionary Biology Commons^™

Improving Conservation Efforts Through A Better Understanding Of Forest Elephant Ecology, The Impacts Of Threats On Elephants And Freshwater Fisheries In Northern Congo, Roger Patrick Boundja

Doctoral Dissertations

IMPROVING CONSERVATION EFFORTS THROUGH A BETTER UNDERSTANDING OF FOREST ELEPHANT ECOLOGY, THE IMPACTS OF THREATS ON ELEPHANTS AND FRESHWATER FISHERIES IN NORTHERN SEPTEMBER 2016 ROGER PATRICK BOUNDJA, B.Sc. FORESTRY, MARIEN NGOUABI UNIVERSITY, BRAZZAVILLE MSc. UNIVERSITY OF CAPE TOWN PhD. UNIVERSITY OF MASSACHUSETTS AMHERST Directed by: Professor Curtice R. Griffin Catch data, including fish numbers, length-weight were collected during a multi-mesh Gillnet fisheries-independent survey in 2007-2008, and fisheries-dependent mixed gear surveys in 2009-2010 and 2015 across 400km stretch of the Sangha River located in the Sangha Tri-National. Overall, very high species richness (Chao 2 mean=250, SD=16.15) and diversity index (Simpson Inverse …

Expansion Of And Reclassification Within The Family Lachnospiraceae, Kelly N. Haas

Doctoral Dissertations

Many of the taxa in the family Lachnospiraceae are currently misclassified as Clostridium spp. Here attempt to rectify many of these issues, beginning with an in-depth genomic and physiologic analysis of Clostridium methoxybenzovorans, culminating in the assertion that is a heterotype of Clostridium indolis, followed by reclassification of the broader group in which this organism resides. We propose two novel genera, Lacriformis and Enterocloster, to reclassify this clade, this includes reclassification of Clostridium sphenoides, Clostridium indolis, Clostridium saccharolyticum, Clostridium celerecrescens, Clostridium xylanolyticum, Clostridium algidixylanolyticum, Clostridium aerotolerans, Clostridium amygdalinum, and …

Distribution And Population Dynamics Of Ungulates In The Mongolian Gobi, Buuveibaatar Bayarbaatar

Doctoral Dissertations

The Mongolian Gobi is one of the most spectacular and important regions in Central Asia, comprising the largest area of intact grassland in the world. In recent years, a growing human population, expanding exploitation of natural resources, and the development of infrastructure in the region place increasing pressure on these species and their habitats. This dissertation has focused on three species of ungulates such as Mongolian saiga (Saiga tatarica mongolica) in western Mongolia, and Asiatic wild ass (Equus hemionus), and goitered gazelle (Gazella subgutturosa) in Southern Gobi. The study on endangered saiga antelope in …

Evaluating Resistance Surfaces For Modeling Wildlife Movement And Connectivity, Katherine Zeller

Doctoral Dissertations

The continued growth of human populations and associated development in many areas of the world is causing persistent fragmentation of natural habitats. In response, wildlife corridors are often promoted as essential for the conservation of wildlife species. Wildlife corridors allow for the movement of individuals between habitat patches and confer many benefits including the maintenance of metapopulations and metapopulation dynamics, the maintenance of seasonal migratory routes, genetic exchange, and the potential for individuals and populations to shift their ranges in response to climate change. Wildlife corridors are modeled across a resistance-to-movement surface where resistance represents the willingness of an organism …

Evaluating Digital Vhf Technology To Monitor Shorebird And Seabird Use Of Offshore Wind Energy Areas In The Western North Atlantic, Pamela H. Loring

Doctoral Dissertations

Information on offshore movements of high priority bird species is needed for monitoring and managing adverse effects of offshore wind energy development in the western North Atlantic Ocean. This information is particularly important at night and during periods of inclement weather when risks of collision with offshore wind turbines may be elevated. For small-bodied avian taxa, technologies for monitoring movements of individually-marked birds are limited since satellite-based devices are still too heavy (> 5 g) for use on birds weighing < 150 g. In this dissertation, I evaluate the use of light-weight (1 to 1.5 g) digital VHF transmitters and a network of automated radio telemetry stations for tracking shorebirds and seabirds in offshore areas. In Chapter One, I compare digital VHF telemetry with satellite telemetry for tracking a shorebird, the American Oystercatcher (Haematopus palliatus), at nesting areas in coastal Massachusetts. In Chapter Two, I evaluate possible adverse effects and retention time …

Ecological Consequences Of Lost Anadromous Forage Fish In Freshwater Ecosystems, Steven R. Mattocks

Masters Theses

Beginning in the early 1600s, dam construction in New England obstructed anadromous fish access to spawning grounds during migration. As a result, anadromous forage fish populations have declined, which has impacted freshwater, marine, and terrestrial ecosystems. To determine the impacts of dams on anadromous forage fish and freshwater ecosystems, I used historical and current data to estimate population changes in alewives (Alosa pseudoharengus) from 1600-1900. A significant reduction in spawning habitat occurred in New England as a result of 1,642 dams constructed between 1600 and 1900, resulting in 14.8% and 16.6% lake and stream habitat remaining by 1900, …

River Herring Conservation In Freshwater: Investigating Fish Reproductive Success And The Educational Value Of Citizen Monitoring Programs, Meghna Marjadi

Masters Theses

Over the last century anadromous alewife (Alosa psuedoharengus) and blueback herring (Alosa aestivalis), collectively called river herring, suffered drastic declines throughout their range from Newfoundland (Canada) to North Carolina (USA). A 2011 petition to include river herring in the Endangered Species Act (ESA) was rejected, partly due to inadequate information towards identifying coast-wide population status. Additionally, knowledge gaps were identified with basic ecology of the river herring life cycle in freshwater, including species reproductive strategies. In Chapter 2, I investigated how body size, spawning arrival time, and sex influence river herring reproductive success. I collaborated with …

Factors Affecting Habitat Quality For Wintering Wood Thrushes In A Coffee Growing Region In Honduras, Brett A. Bailey

Masters Theses

Amongst the diversity of taxa that occur in the Neotropics, 200 migratory bird species that breed in temperate North America can be found. Many of these populations have seen significant declines since the 1960s. The Wood Thrush, Hylocichla mustelina, is one such species. Shade coffee and other agroforestry practices show potential for benefiting migratory species, but the quality of coffee habitat and optimal habitat characteristics for Wood Thrushes remain unknown.

I surveyed a spatially complex, agricultural landscape in Honduras outside the recognized winter range of the Wood Thrush and radio-tagged 46 individuals within rustic coffee farms during the winters …

The Meat-Farming Ants: Predatory Mutualism Between Melissotarsus Ants (Hymenoptera: Formicidae) And Armored Scale Insects (Hemiptera: Diaspididae), Scott A. Schneider

Doctoral Dissertations

Ant agricultural mutualisms are common, well studied, and receive attention from scientific and public spheres due to shared similarities with human agriculture (i.e. ant/fungus ‘crop farming’ and ant/insect ‘dairy farming’). They also serve as important model systems for studying many facets of mutualism. This study reveals that the repertoire of ant agriculture may also include ‘meat farming’. Predatory mutualisms occur between Melissotarsus ants and various species of armored scale insects. This dissertation employs a multi-disciplinary approach to investigate the evolutionary history and nature of ant/diaspidid mutualisms. Chapter 1 reviews the current state of knowledge regarding species composition of these associations …

Song Perception In Communication Networks, Sarah Goodwin

Doctoral Dissertations

Communication is a cornerstone of animal behavior and mediates myriad interactions pertaining to survival and reproduction. For animals that communicate acoustically, signals are carried to multiple receivers in what is described as communication networks. In my dissertation, I explore how songbirds and their songs are perceived and used in networks. First, I examine a dilemma many animals face when communicating in a network – how do animals contend with overlapping, conspecific noise? Using a playback experiment in the field, I document Black-capped Chickadees (Poecile atricapillus) shifting the frequency of their song in the presence of overlapping noise. Next, …

Spatial Ecology Of Great Barracuda (Sphyraena Barracuda) Around Buck Island Reef National Monument, St. Croix, U.S.V.I., Sarah L. Becker

Masters Theses

Marine protected areas (MPAs) are increasing in popularity as a tool to manage fish stocks through conservation of entire habitats and fish assemblages. Quantifying the habitat use, site fidelity, and movement patterns of marine species is vital to this method of marine spatial planning. The success of these protected areas requires that sufficient habitat is guarded against fishing pressure. For large animals, which often have correspondingly large home range areas, protecting an entire home range can be logistically challenging. For MPAs to successfully protect large top predator species, it is important to understand what areas of a home range are …

Trophic Relationships Among Caribou Calf Predators In Newfoundland, Chris Zieminski

Masters Theses

Using specially trained scat detection dogs we located fecal samples from black bear (Ursus americanus) and coyote (Canis latrans) throughout three study areas in Newfoundland, Canada, to describe these predators diet. Our sampling efforts were designed around seasons which were important to woodland caribou (Rangifer tarandus caribou) calving and resource use. We identified hairs microscopically to prey species and grouped other remains to facilitate our analysis. Bear exhibited an omnivorous diet throughout the study areas, ecological seasons and inside and outside the caribou calving grounds while coyote were limited to caribou, moose and snowshoe …

Modeling Historical And Future Range Of Variability Scenarios In The Yuba River Watershed, Tahoe National Forest, California, Maritza Mallek

Masters Theses

In California's northern Sierra Nevada mountains, the fire-dependent processes of forest ecosystems have been interrupted and altered by human land use and fire suppression. U.S. Forest Service policy directs land managers to plan for a future that includes multiple use and the restoration of resilient ecosystems. Planning decisions are to be informed by an analysis of the range of variability of ecological processes at multiple scales. Current climate trends in the northern Sierra are of increasing temperatures, increased precipitation, and earlier snowmelt, as well as changes to the frequency and duration of drought. These climate changes have and continue to …

Variations In The Invertebrate Communities Of Wild Cape Cod Cranberry Bogs, Barbara Wagner

Masters Theses

As a species domesticated only in the last century, agricultural cranberry plants (Vaccinium macrocarpon) remain little removed from their wild relatives. Thus, it is a potential model species for studies of the earliest stages of domestication; however, there is little available quantitative information on its wild population biology and ecology. As such information is vital to studies of the ecological changes occurring during domestication, the purpose of this study was to consolidate the relevant knowledge available and conduct a preliminary search for patterns in the invertebrate communities of wild bogs. The alpha diversity was found to be greater …

Population Genetic Analysis Of Atlantic Horseshoe Crabs (Limulus Polyphemus) In Coastal Massachusetts., Katherine T. Johnson

Masters Theses

Atlantic horseshoe crabs (Limulus polyphemus) have endured decades of intense harvest pressure. Genetics studies have shown evidence of distinct sub-groups spanning the coast, although few fine-scale studies have been done to delineate these groups on a local level. Massachusetts lies directly between two of these sub-groups. With documented differences in prosomal widths of horseshoe crabs from either side of Cape Cod, it is possible that Cape Cod is a barrier to gene flow and that there are two distinct genetic groups within Massachusetts. Regulations currently consider all horseshoe crabs to be of one stock. I examined 6 microsatellite …

Evolvability Of The Skull: A Study Of Genetic Basis And Integration In The Teleost Craniofacial Skeleton, Yinan Hu

Doctoral Dissertations

As the field of evolutionary biology pivots away from a gene-centric view of how adaptive evolution proceeds, renewed emphasis is placed on the origin of phenotypic variation. Understanding the developmental processes that underlie the production of novel traits, and how they might influence evolvability, is considered a primary goal in the on-going “extended evolutionary synthesis”. The following dissertation explores these questions in the context of adaptive radiations in fish, with a focus on morphological variation in the craniofacial skeleton. Specifically, the first chapter investigates the genetic and developmental basis of shape (co-)variation in the feeding apparatus of African cichlid fishes, …

Supporting New England Communities To Become River-Smart: Policies And Programs That Can Help New England Towns Thrive Despite River Floods, Eve Vogel, Et. Al.

Water Reports

This report aims to help New England’s communities and their residents, as well as the governments thatserve them, to better deal with and adjust to riverfloods. It points to practical policy solutions at federal, state and regional levels that can support NewEngland communities to become what we call river-smart.

Distribution Locations Of Invasive Species (Out Of The Weeds? Reduced Plant Invasion Risk With Climate Change In The Continental United States), Bethany Bradley, Jenica Allen

Environmental Conservation Datasets

The comma-delimited data file includes the species code (see Supplemental Online Table S2 for full species names), latitude, and longitude in decimal degrees (WGS84) for the occurence points used in model fitting. Some data use agreements prohibit the publication of coordinate data and those points have been removed.

Spatial Capture–Recapture Models Allowing Markovian Transience Or Dispersal, J. Royle, Angela Fuller, Chris Sutherland

Environmental Conservation Faculty Publication Series

Spatial capture–recapture (SCR) models are a relatively recent development in quantitative ecology, and they are becoming widely used to model density in studies of animal populations using camera traps, DNA sampling and other methods which produce spatially explicit individual encounter information. One of the core assumptions of SCR models is that individuals possess home ranges that are spatially stationary during the sampling period. For many species, this assumption is unlikely to be met and, even for species that are typically territorial, individuals may disperse or exhibit transience at some life stages. In this paper we first conduct a simulation study …

Quantifying The Human Influence On Fire Ignition Across The Western Usa, Emily J. Fusco, John T. Abatzoglou, Jennifer K. Balch, John T. Finn, Bethany Bradley

Environmental Conservation Faculty Publication Series

Humans have a profound effect on fire regimes by increasing the frequency of ignitions. Although ignition is an integral component of understanding and predicting fire, to date fire models have not been able to isolate the ignition location, leading to inconsistent use of anthropogenic ignition proxies. Here, we identified fire ignitions from the Moderate Resolution Imaging Spectrometer (MODIS) Burned Area Product (2000–2012) to create the first remotely sensed, consistently derived, and regionally comprehensive fire ignition data set for the western United States. We quantified the spatial relationships between several anthropogenic land-use/disturbance features and ignition for ecoregions within the study area …

Continent-Wide Survey Reveals Massive Decline In African Savannah Elephants, Michael J. Chase, Scott Schlossberg, Curtice R. Griffin, Philippe J.C. Bouché, Sintayehu W. Djene, Paul W. Elkan, Sam Ferreira, Falk Grossman, Edward Mtarima Kohi, Kelly Landen, Patrick Omondi, Alexis Peltier, S.A. Jeanetta Selier, Robert Sutcliffe

Environmental Conservation Faculty Publication Series

African elephants (Loxodonta africana) are imperiled by poaching and habitat loss. Despite global attention to the plight of elephants, their population sizes and trends are uncertain or unknown over much of Africa. To conserve this iconic species, conservationists need timely, accurate data on elephant populations. Here, we report the results of the Great Elephant Census (GEC), the first continent-wide, standardized survey of African savannah elephants. We also provide the first quantitative model of elephant population trends across Africa. We estimated a population of 352,271 savannah elephants on study sites in 18 countries, representing approximately 93% of all savannah …

Spatial Capture–Recapture: A Promising Method For Analyzing Data Collected Using Artificial Cover Objects, Chris Sutherland, David Mun'oz, David Miller, Evan Grant

Environmental Conservation Faculty Publication Series

Spatial capture–recapture (SCR) is a relatively recent development in ecological statistics that provides a spatial context for estimating abundance and space use patterns, and improves inference about absolute population density. SCR has been applied to individual encounter data collected noninvasively using methods such as camera traps, hair snares, and scat surveys. Despite the widespread use of capture based surveys to monitor amphibians and reptiles, there are few applications of SCR in the herpetological literature. We demonstrate the utility of the application of SCR for studies of reptiles and amphibians by analyzing capture–recapture data from Red-Backed Salamanders, Plethodon cinereus, collected using …

Ecological And Management Implications Of Climate Change Induced Shifts In The Phenology Of Alewife (Alosa Pseudoharengus), Sam Stettiner, Michelle Staudinger, Adrian Jordaan, John Sheppard

Student Showcase

Climate change is causing species to shift their phenology, or the timing of recurring life events such as migration and reproduction, in variable and complex ways. This can potentially result in mismatches or asynchronies in food and habitat resources that negatively impact individual fitness, population dynamics, and ecosystem function. This project seeks to improve our understanding of shifts in the timing of seasonal migration and spawning of adult anadromous alewife, Alosa psuedoherengus in seven natal stream systems within the state of Massachusetts: Acushnet, Agawam, Herring, Jones, Nemasket, Stoney Brook, and Town Brook Rivers. Initial analyses examined if and how the …