Ecology and Evolutionary Biology Commons^™

Development Of Methods To Track Oyster Movement Under Field Conditions In North Inlet Estuary, South Carolina, Alyssa M. Leclaire

Honors Theses

Eastern oyster (Crassostrea virginica) reefs provide important habitat structure and ecosystem services in saltmarsh tidal creek estuaries. Reef persistence depends on growth of resident individuals and regular recruitment to maintain suitable shell substrate. Boat wakes potentially physically displace oyster clumps. The objective of this research was to develop methods to track oyster clump position and biomass on two natural fringing oyster reefs in North Inlet estuary, South Carolina. Boat traffic (number of boats making wakes per day), oyster clump displacement (cm/d) over time, oyster biomass (g dry tissue), and condition index (biomass/g dry shell weight) were quantified from …

Chronoecology Of A Cave-Dwelling Orb-Weaver Spider, Meta Ovalis (Araneae: Tetragnathidae), Rebecca Steele

Electronic Theses and Dissertations

Circadian clocks enable coordination of essential biological and metabolic processes in relation to the 24-hour light cycle. However, there are many habitats that are not subject to this light cycle, such as the deep sea, arctic regions, and cave systems. This study analyzes the circadian pattern of isolated populations of a subterranean spider, Meta ovalis from two Tennessee caves and five Indiana caves. Locomotor activity was recorded with TriKinetics LAM50 Locomotor Activity Monitor under a 12-hour light (L), 12-hour dark (D) (LD 12:12) cycle preceding total darkness (DD). Significant differences were found within and among populations found in Tennessee cave …

Genetic Analysis Of Invasive Populations Of Ventenata Dubia (Poaceae): An Assessment Of Propagule Pressure And Pattern Of Range Expansion In The Western United States, Inna Pervukhina-Smith

Boise State University Theses and Dissertations

Molecular markers prove to be an invaluable tool in assessing the introduction dynamics, pattern of range expansion, and population genetics of an invasive species. Ventenata dubia (Leers) Coss. (Aveneae; ventenata) is a diploid, primarily self-pollinating, annual grass native to Eurasia and Northern Africa. The grass has a detailed herbarium collection history in the western United States since its discovery in eastern Washington in 1952. Genetic analysis of 51 invasive populations (1636 individuals) of V. dubia, coupled with historical records, suggests moderate propagule pressure from multiple introductions, followed by local or regional range expansion. Enzyme electrophoresis detected nine multilocus genotypes …

Temporal Factors Affecting Foraging Patterns Of A Diurnal Orb-Weaving Spider, Micrathena Gracilis (Araneae: Araneidae), Mitchell Davis Long

Undergraduate Honors Theses

Several studies have investigated the ecological factors that affect behavior in Micrathena gracilis, a diurnal orb-weaving spider that forages on flying insects during the day. However, none yet have considered how the temporal distributions of prey and predator occurrences shape their daily behavioral rhythms, especially web construction, which involves a heavy energetic investment well in advance of potential nutritional benefit. Recently, several orb-weaving spider species have been shown to exhibit a variety of abnormal rhythms, suggesting that circadian clock-controlled rhythms may play an unexpected role in behavioral evolution. Despite the appearance of significant insect abundance in the evenings, M. gracilis …

A Basic Ddradseq Two‐Enzyme Protocol Performs Well With Herbarium And Silica‐Dried Tissues Across Four Genera, Ingrid E. Jordon-Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels

Faculty Journal Articles

Premise

The ability to sequence genome‐scale data from herbarium specimens would allow for the economical development of data sets with broad taxonomic and geographic sampling that would otherwise not be possible. Here, we evaluate the utility of a basic double‐digest restriction site–associated DNA sequencing (ddRADseq) protocol using DNAs from four genera extracted from both silica‐dried and herbarium tissue.

Methods

DNAs from Draba, Boechera, Solidago, and Ilex were processed with a ddRADseq protocol. The effects of DNA degradation, taxon, and specimen age were assessed.

Results

Although taxon, preservation method, and specimen age affected data recovery, large phylogenetically informative …

Wood-Inhabiting Fungi Of The Eastern Ecuadorian Cloud Forest: Fungal Diversity Comparison Along An Altitudinal Gradient In The Rio Zuñac Reserve, Thane Gehring, Rosa Batalles

DU Undergraduate Research Journal Archive

Wood-inhabiting fungi are responsible for the degradation of dead wood, playing a role in nutrient cycling and nutrient transport making them indispensable to their ecosystem’s health. Fungi are generally understudied, specifically in the tropics despite its proven hotspot in diversity and the importance of conservation. Wood-inhabiting fungi were investigated in the eastern Andean montane cloud forest of Ecuador to determine the biodiversity, distribution, and relation to an altitudinal gradient. Along multiple ridges of EcoMinga’s Rio Zuñac reserve, 13 20x20 meter (0.1-hectare) quadrants between the altitudes of 1300 to 2000 meters were sampled for wood-inhabiting fungi. A total of 175 samples …

Checklist Of The Freshwater Sponges (Porifera: Spongillida) Of Tennessee, John E. Copeland

Cumberland Mountain Naturalist

Of the ~8,500 sponge species that are known to exist, approximately 3% inhabit freshwater. Taxonomically, freshwater sponges are divided into 6 families with less than 250 identified species. Of these, 33 species of freshwater sponge can be found in the Nearctic Biogeographical realm with 13 species documented in Tennessee waters. Species of three families, Metanidae, Potamolepidae, and Spongillidae, are known to occur in the United States but only members of Potamolepidae and Spongillidae have been collected from Tennessee waters. This article presents a species checklist with currently known distribution information.

Evolutionary Ecology Of Host-Parasite Relationships: Role Of Host Ecology, Phylogeny, And Demographics In Shaping Parasite Evolution, Erika Taylor Gendron

Biology ETDs

Host-parasite systems exist across complex and ecologically heterogeneous landscapes, and may occur across taxonomically and ecologically disparate host species. Under these conditions, mechanisms underlying microevolutionary processes (i.e. gene flow, genetic drift) are not always clear, and may be mediated by numerous co-occurring factors specific to individual hosts. Host traits such as host immunology, demographics, phylogeny and ecology may act in concert to shape host-parasite relationships, and ultimately evolutionary processes. The research described herein used phylogeographic, phylogenomic, and population genetic methods to further understanding of how host traits impact the evolutionary ecology of trematode systems, using avian schistosomes (Digenea: Schistosomatidae) as …

Driver Of Avian Haemosporidian Diversity And Host Specificity In The Solomon Islands, Xena Marie Mapel

Biology ETDs

Avian haemosporidians are protist parasites that are distributed worldwide. We investigated these parasites in a tropical South Pacific archipelago to answer two questions: 1) Which community characteristics influence haemosporidian diversity; 2) Does host specificity vary across islands? To answer these questions we sequenced a mitochondrial gene and created linear models to establish relationships between select variables and diversity. In addition, we calculated host breadth of each lineage and constructed models to infer predictors of diversity. The percent of infected individuals on each island was correlated with island area. Haemosporidian phylogenetic diversity on a given island was associated with the proportion …

Diversity Of The Major Histocompatibility Complex In African Penguins (Spheniscus Demersus) In Situ, Athena Schalk

Undergraduate Honors Thesis Projects

The Major Histocompatibility Complex (MHC) is responsible for the immune response in all jawed vertebrates and protects individuals against a variety of pathogens and diseases. Maintaining genetic diversity within the MHC exons is critical to protecting endangered species. African penguins (Spheniscus demersus) are in danger of losing their MHC diversity in isolated populations due to reductions in population size associated with environmental changes and human activity. This study analyzes the diversity within the exons in the DNA encoding the MHC by amplifying the exons through polymerase chain reaction and identifying alleles through denaturing gradient gel electrophoresis. Wild populations of …

An Analysis Of Social Dominance In The Feeding Of Ex Situ Humboldt Penguins (Spheniscus Humboldti), Robert Gabel

Honors Program: Senior Projects (Public)

In the field of ecology, complex social structures, including dominance hierarchies, have been demonstrated in a variety of fauna, including bird species. While wild Humboldt Penguins (Spheniscus humboldti) do not exhibit a feeding hierarchy, captive penguins are under very different conditions. Humboldt penguins feed on schooling fish in the wild, but in captivity are hand fed from a zookeeper. I investigated whether there is a nonrandom pattern of dominance in the feeding order of the penguins at the Lincoln Children’s Zoo, in Lincoln, NE, USA. Using a camera and tripod, with assistance from four of the zookeepers, I …

Effects Of Leaf Litter On Organ Size Plasticity And Microbiome Composition In The Larval Gray Tree Frog, Hyla Versicolor, Delaney Lyons

Undergraduate Distinction Papers

Abstract

Leaf litter can influence growth and development of amphibians by providing nutrients, structural support, and chemical leachates to the water. The purpose of this research was to determine the effects of Red Maple, Acer rubrum, and Pin Oak, Quercus palustris, leaf litter on organ size plasticity and microbiome composition in larval gray treefrogs, Hyla versicolor. Larvae were raised in outdoor mesocosms each containing 20 tadpoles. The treatments included: no leaf litter, maple litter, and oak litter. There were also treatments in which leaves were soaked in advance to remove leachates. This separated leaf structure from chemical make-up. Each treatment …

Grackles, Michael J. Bodenchuk, David L. Bergman

Wildlife Damage Management Technical Series

Numbering in the tens of millions of birds, grackle populations in North America can cause a variety of conflicts with people. Grackles eat agricultural crops and livestock feed, damage property, spread pathogens, and collide with aircraft. Their large roosts can be a nuisance in urban and suburban areas. A combination of dispersal techniques, exclusion, and lethal removal may help to reduce grackle damage.

Grackles adapt easily to human-dominated environments, and exploit human food and other features of human landscapes. Thus, an integrated damage management approach to grackle damage focuses on reducing and eliminating the damage, rather than simply controlling grackle …

Diversity And Ethnobotanical Importance Of Pine Species From Sub-Tropical Forests, Azad Jammu And Kashmir, Kishwar Sultana, Sher Wali Khan, Safdar Ali Shah

Journal of Bioresource Management

A general investigation of sub-tropical forests, from Pir Chinasi National Park, Tolipir National Park, Dhirkot Nature Reserve and Banjosa Game Reserve was carried out during different months from February 2008 to May 2010. The relative abundance of species was calculated using line transects of 50m. A total of five different species (Abies pindrow. Cedrus deodara, Pinus wallichiana, Pinus roxburgii and Picea smithiana) from the Pinaceae family were recorded. The main reported use of Cedrus deodara and Pinus wallichiana by the local people was for furniture and construction purposes. Pinus wallichiana was observed as the dominant …

Molecular Differentiation Of Astragalus Species And Varieties From The Western United States: The Chloroplast Dna Bridge Between Evolution And Molecular Systematics, Marwa Neyaz, Daniel Cook, Rebecca Creamer

Poisonous Plant Research (PPR)

Locoweeds are the most widespread poisonous plant problem in the world and have been reported in the Western United States since the 1800s, causing tremendous losses in livestock. Consumption of locoweeds by grazing animals stimulates the neurological disease, locoism, characterized by weight loss, ataxia, and lack of muscular coordination. The name locoweed is used for Astragalus and Oxytropis species known to contain swainsonine, the toxic principle produced by the plant endophytic fungus Undifilum. Astragalus includes 2,500-3,000 species and many varieties that have almost identical morphological characteristics that overlap among species, leading to improper identification. Therefore, the aim of this study …

Eelgrass Health Survey And Results, Nicholas B. Anderson, Catherine M. Ashcraft, Dante D. Torio, Frederick T. Short

Natural Resources & the Environment

Researchers at the University of New Hampshire designed, tested, and conducted an eelgrass health survey. The primary goal of the survey was to collect health ratings from respondents who had viewed pre-selected images of eelgrass representing a wide range of health conditions. Survey results were used as a calibration and validation to a novel eelgrass health index developed using video-monitoring. Two secondary goals of this this survey were the identification of plant-specific and environmental characteristics important to respondents and the introduction of the new eelgrass health index. This published dataset includes de-identified survey respondent background and demographic data, the survey …

Common Ravens, Luke W. Peebles, Jack O. Spencer Jr.

Wildlife Damage Management Technical Series

Damage Management Methods for Common Ravens

Type of Control -- Available Management Options

Exclusion -- Often ineffective or impractical

Fertility Control -- None available

Frightening Devices -- Effigies • Pyrotechnics and propane cannons • Lasers and flashing lights

Habitat Modification -- Bale and bury garbage • Install dumpsters with secure lids • Remove or bury dead livestock • Remove abandoned houses, sheds, and barns to eliminate nesting structures

Nest Treatment -- Allowed with proper Federal and State permits; Egg oiling or addling and nest destruction

Repellents -- Methiocarb (EPA Reg. No. 56228-33) • Methyl anthranilate (food-grade grape flavoring agent)

Shooting …

Martin Luther King Jr. And Ernest Everett Just - On Evolution Of Ethical Behavior, Theodore Walker

Perkins Faculty Research and Special Events

Rev. Martin Luther King Jr. prescribed an evolutionary advance in ethical behavior: the total “abolition of poverty” and the abolition of war throughout “the world house.” Cell biologist Ernest Everett Just advanced the idea that human ethical behavior evolved from cellular origins.

Also, astrobiologists Chandra Wickramasinghe and Sir Fred Hoyle advanced the idea of cosmic biology, including stellar evolution and cosmic evolution. From cells to humans to stars and cosmology, evolutionary natural science converges with natural theology.

The Bioethical Significance Of “The Origin Of Man’S Ethical Behavior” (October 1941, Unpublished) By Ernest Everett Just And Hedwig Anna Schnetzler Just, Theodore Walker Jr.

Journal of the South Carolina Academy of Science

Abstract –

E. E. Just (1883-1941) is an acknowledged “pioneer” in cell biology, and he is perhaps the pioneer in study of egg cell fertilization. Here we discover that Just also made pioneering contributions to general biology and evolutionary bioethics.

Within Just’s published contributions to observational cell biology, there are substantial fragments of his theory of ethical behavior, a theory with roots in cell biology. In addition to such previously available fragments, Just’s fully developed theory is now available. This recently discovered unpublished book-length manuscript argues for the biological origins of ethical behavior (evolving from cells to humans, within a …

The Undergraduate Student’S Guide To Geometric Morphometrics, Erika Crispo

Open Educational Resources

Embarking on a new research endeavor can be a daunting task. User guides, books, and published articles are written for an audience that already has some background experience in the field. Undergraduate students like you, who are at the very beginning of their research careers, often struggle to make sense of these documents. Furthermore, students like you often attempt to do so while balancing heavy course loads. Thus, I have written this document to help ease the burden so that you have more time to ponder the interesting scientific questions instead of digging through pages upon pages of documentation. I …

Eastern Diamondback Rattlesnake (Crotalus Adamanteus) Ambush Site Selection In Coastal Saltwater Marshes, Emily Rebecca Mausteller

Theses, Dissertations and Capstones

The eastern diamondback rattlesnake (Crotalus adamanteus; EDB) is a species of conservation concern associated with the imperiled longleaf pine-grassland ecosystem. The longleaf pine ecosystem is characterized by an open canopy and rich ground cover. Researchers have speculated that the vegetation structure of salt marshes may serve as a surrogate habitat for longleaf pine savannas. Although these marshes have little topography, they provide a heterogeneous landscape with patches of mud flats, sandy hard marsh along upper tidal areas, and salt marsh hummocks throughout. I used radio telemetry to monitor free-ranging EDBs on a South Carolina sea island. The goal of my …

What Makes Bats Special So That They Are Reservoirs For So Many Different Pathogens?, Deion Anderson, Eleanor Gorkovchenko, Nicole Hamada, Carolina Martinez, Lupe Martinez

2020 Symposium Posters

Bats, order Chiroptera, comprise more than 20 percent of all living mammal species with more than 1100 species. Bats are organisms that have high body temperatures and metabolic rates. Therefore, viral adaptation to febrile conditions in the bat host might explain the high reservoir competence that distinguishes these organisms from other mammalian hosts. The purpose of this study is to present a comparative meta-review of the available evidence in order to investigate and identify the reasons or characteristics as to what makes bats special reservoirs for so many different pathogens. Our investigation will not focus on a particular bat species, …

Impact Of Nacl Tolerance On The Stress Physiology And Fitness Of Larval Wood Frogs (Rana Sylvatica), Grascen Shidemantle, Nicholas Buss, Jessica Hua

Biological Sciences Student Scholarship

No abstract provided.

Cellular And Developmental Insights Into The Early Evolution Of Muscle, Jeffrey J. Colgren

Electronic Theses and Dissertations

Whereas a great deal has been learned about the molecular underpinnings of morphological evolution in animals, much less is known about the origin of novel cell and tissue types. During the time in which the earliest animal lineages were diversifying, fundamental cell and tissue types, such as muscles, arose. Sponges are one of two animal lineages that lack muscles, yet they undergo coordinated full body contractions. Whereas the signaling processes have been studied, the physical mechanisms of contraction are completely uncharacterized. The main purpose of this work is to understand the primary contractile tissue of the sponge Ephydatia muelleri, …

Subalpine Forest Tree Seedling Response To Drought, Alex Goke

Electronic Theses and Dissertations

Knowledge of tree species’ ability to tolerate drought is necessary to anticipate future forest dynamics with climate change, especially at the seedling stage given their role in shaping forest structure. We used precipitation reduction shelters to mimic drought for subalpine conifer seedlings (A. lasiocarpa and P. engelmannii) in the Rocky Mountains and compared survivorship and morphological and physiological responses to assess relative degrees of drought tolerance. We detected no significant investment in morphological tolerance traits (e.g. root biomass, leaf:stem area ratio) but substantial reductions in net photosynthesis. While shading partially ameliorated drought effects when precipitation reduction was moderate, …

Rodent Seed Preference Trials Of Ecologically Important Plants In Kentucky, Katelyn Thomason

Mahurin Honors College Capstone Experience/Thesis Projects

Seed predation is an important ecological process that can affect the success of individual plants and plant populations as a whole. However, seed preferences of herbivores have received little detailed attention in comparison to seedling predation studies (Hulme, 1994). In this project I researched how rodents, specifically their seed preferences, affect the recruitment and survival of ecologically important native plants in Western Kentucky. I used traps to catch Peromyscus leucopus (white-footed mice). Once caught, each mouse was placed in a trial arena with seeds from Silphium perfoliatum (cup plant), Baptisia australis (blue false indigo), Silphium lanciniatum (compass plant), and the …

Morphological Correlates Of Auditory Sensitivity In The Inner Ear Of Two Species Of Invasive Carp, Tyler Patty

Mahurin Honors College Capstone Experience/Thesis Projects

Silver (Hypopthalmichthys molitrix) and bighead (H. nobilis) carp, are invasive species that have negative impacts upon ecosystems. H. molitrix is known to jump completely out of the water in response to broadband sounds, however, this is not observed in H. nobilis. Preliminary experiments reveal that sounds can be used to modify the behavior of carps. Thus, understanding the hearing abilities of these species is important in order to design appropriate acoustical deterrents. Fish heads were preserved in 4% paraformaldehyde and the inner ears dissected and photographed under a light microscope in order to describe the …

Ticks On Lizards: Parasite-Host Interactions Of The Southern Alligator Lizard (Elgaria Multicarinata) In Washington State, Emma Houghton

Undergraduate Honors Theses

I investigated interactions between ectoparasites (ticks) and their host, the southern alligator lizard (Elgaria multicarinata). Alligator lizards are capable of complement-mediated killing of the Lyme disease spirochete carried by ticks and may potentially reduce Lyme disease prevalence by cleansing pathogenic organisms from ticks. Despite this, little is known about host-parasite dynamics in alligator lizards. My goals were to 1) assess patterns of tick presence (i.e. parasite load) on alligator lizards and 2) investigate potential negative effects of ticks on alligator lizards. I sampled lizards during the summer of 2019 near Catherine Creek, along the Columbia River Gorge in southern Washington. …

Investigating The Avian Species Composition, Diversity, And Abundance Of Engelhorn Pond, Kiana Rose

Undergraduate Honors Theses

Central Washington University’s Engelhorn Pond contains important habitats for many organisms, particularly migratory birds, and is a valuable resource for students. However, little information is available about the wildlife inhabiting the pond. The pond’s discrete location means that many people are unaware of its existence. In addition, the pond is threatened by a number of anthropogenic sources, including chemical runoff, garbage, and feral cats. By using point counts, a common ornithological survey technique, I recorded the bird species present at the pond during all seasons of the year. I collected data using point counts during 13 visits from June of …

Ticks On Lizards: Parasite-Host Interactions Of The Southern Alligator Lizard (Elgaria Multicarinata) In Washington State, Emma Houghton

All Undergraduate Projects

I investigated interactions between ectoparasites (ticks) and their host, the southern alligator lizard (Elgaria multicarinata). Alligator lizards are capable of complement-mediated killing of the Lyme disease spirochete carried by ticks and may potentially reduce Lyme disease prevalence by cleansing pathogenic organisms from ticks. Despite this, little is known about host-parasite dynamics in alligator lizards. My goals were to 1) assess patterns of tick presence (i.e. parasite load) on alligator lizards and 2) investigate potential negative effects of ticks on alligator lizards. I sampled lizards during the summer of 2019 near Catherine Creek, along the Columbia River Gorge in southern Washington. …