Ecology and Evolutionary Biology Commons^™

A Phylogeny And Revised Classification Of Squamata, Including 4161 Species Of Lizards And Snakes, R. Alexander Pyron, Frank T. Burbrink, John J. Wiens

Publications and Research

Background: The extant squamates (>9400 known species of lizards and snakes) are one of the most diverse and conspicuous radiations of terrestrial vertebrates, but no studies have attempted to reconstruct a phylogeny for the group with large-scale taxon sampling. Such an estimate is invaluable for comparative evolutionary studies, and to address their classification. Here, we present the first large-scale phylogenetic estimate for Squamata.

Results: The estimated phylogeny contains 4161 species, representing all currently recognized families and subfamilies. The analysis is based on up to 12896 base pairs of sequence data per species (average = 2497 bp) from 12 genes, …

The Economic Impact Of Commensal Rodents On Small Businesses In Manhattan’S Chinatown: Trends And Possible Causes, Anthony Almeida, Robert Corrigan, Ronald Sarno

Suburban Sustainability

Given the history of well-documented rodent infestations in New York City we were interested in assessing the economic impact of rats and mice on small businesses in The Lower East Side of Manhattan. Via mailed surveys and on-site interviews , we quantified damage to structures, loss of saleable goods and merchandise, the cost of pest-control professionals, and/or self-applied poison/traps. Overall, 16% of business (n = 76) responded to our queries. To those businesses reporting some level of rodent damage, average losses included $513 in merchandise, $726 in pest-control fees, $371 in repair costs to structure, and $125 in do-it-yourself deployment …

Effects Of Increased Nitrogen Deposition On The Dominance Of Hedera Helix In The Pacific Northwest, Bianca Christine Dolan

Dissertations and Theses

Increased nitrogen deposition has been shown to promote the dominance of invasive species, and nitrogen deposition rates have steadily increased in most of the Western United States in recent years due to population increases. The purpose of this study was to determine if increased rates of nitrogen deposition are contributing to the success of Hedera helix in the Pacific Northwest. Plots were established in Lesser Park in Portland, Oregon and received monthly treatments of ammonium nitrate for one year. Growth, measured as change in percent cover, was compared between treated and untreated plots for both H. helix and native species. …

A Distributed Intelligence Approach To Multidisciplinarity: Encouraging Divergent Thinking In Complex Science Issues In Society., Jarod Kawasaki, Dai Toyofuku

The Transdisciplinary STEAM+ Journal

The scientific issues that face society today are increasingly complex, open-ended and tentative (Sadler, 2004). Finding solutions to these issues, not only requires an understanding of the science, but also, concurrently dealing with political, social, and economic dimensions that exist (Hodson, 2003). For example, 40 years after the first congressional hearing on climate change held by Al Gore in 1976, the 2012 Intergovernmental Panel on Climate Change (IPCC) report states that climate change is still getting worse, despite efforts by governments, businesses, social actors such as Non-Government Organizations, and scientists. With the top minds in the world, across all disciplines, …

Lter Network Data Availability Correspondence, Emery Boose

Long Term Ecological Research Network

An email from Emery Boose regarding the tracking downloads from PASTA that was discussed in the EB meeting.

A Comparison Of Relative Ear Length Between Two Neighboring Populations Of Peromyscus Maniculatus, Joshua S. Willems

Biological Sciences

This study attempts to determine if a significant difference in relative ear length exists between two neighboring populations of Peromyscus maniculatus on the central coast of California. Data was collected from individuals trapped at two plots in the Guadalupe-Nipomo Dunes National Wildlife Refuge and two plots near Black Lake, under the supervision of Francis X. Villablanca, Ph. D. of California Polytechnic State University, San Luis Obispo. A total of 98 individuals were captured over the course of three nights of trapping. A regression analysis was performed comparing the ear lengths of each population relative to body size. The analysis of …

Using Stable Isotope Analysis Of Zooplankton To Document Trophic And Biogeochemical Changes In The San Francisco Estuary, Steven C. Westbrook, Julien Moderan

STAR Program Research Presentations

Zooplankton represent a vital link between phytoplankton and fish, like the endangered Delta Smelt. Human interferences (nitrates from waste water, flow alteration, invasive species introduction…) have altered the structure of the San Francisco Estuary (SFE) ecosystem. We use stable isotope analysis to improve our knowledge of the planktonic food web in the SFE and gain insights into its evolution over the past decades. We use the ratios of certain isotopes (Nitrogen, Carbon, Sulfur, etc.) in different species of zooplankton to tell us what it is feeding on as well as the trophic level it feeds in. My research focused on …

A Further Look At The 1858 Wallace-Darwin Mail Delivery Question, Charles H. Smith

DLPS Faculty Publications

Recent investigations have led to a conclusion that Alfred Russel Wallace probably mailed his ‘Ternate’ paper on natural selection to Darwin a month later than some have thought, thus freeing Darwin from possible accusations of plagiarism. Further examination of the question suggests this conclusion is premature, as the evidence in favor of the later mailing date appears to be shakier than first thought.

Ethics And The Economist: What Climate Change Demands Of Us, Julie A. Nelson

Economics Faculty Publication Series

Climate change is changing not only our physical world, but also our intellectual, social, and moral worlds. We are realizing that our situation is profoundly unsafe, interdependent, and uncertain. What, then, does climate change demand of economists, as human beings and as professionals? A discipline of economics based on Enlightenment notions of mechanism and disembodied rationality is not suited to present problems. This essay suggests three major requirements: first, that we take action; second, that we work together; and third, that we focus on avoiding the worst, rather than obtaining the optimal. The essay concludes with suggestions of specific steps …

Range Maps For Nebraska's Threatened And Endangered Species, Nebraska Natural Heritage Program

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

This document includes maps and associated information on the ranges of Nebraska’s federal and state-listed species. The information is current as of January 2013. The information is updated as needed. Contact the Nebraska Game and Parks Commission to determine if a more current version is available. The species treated are as follows: American Burying Beetle (Nicrophorus americanus), Salt Creek Tiger Beetle (Cicindela nevadica lincolniana), Swift Fox (Vulpes velox), River Otter (Lutra canadensis), Southern Flying Squirrel (Glaucomys volans), Pallid Sturgeon (Scaphirhyncus albus), Topeka Shiner (Notropis topeka), Sturgeon Chub (Macrhybopsis gelida), Blacknose Shiner (Notropis heterolepis), Lake Sturgeon (Acipenser fulvescens), Northern Redbelly Dace …

Colonization Of Subterranean Habitats By Spiders In Central Europe, Vlastimil Růžička, Petr Šmilauer, Roman Mlejnek

International Journal of Speleology

Using data from the Czech Republic, we studied the distribution of spiders in soils, crevice systems, scree and caves, i.e. subterranean habitats at depths spanning from 10 cm to 100 m. In total, we found 161 species. The number of species declines with increasing habitat depth, with a major drop in species richness at the depth of 10 meters. Thirteen species exhibit morphological adaptations to life in subterranean habitats. At depths greater than 10 meters, spider assemblages are almost exclusively composed of troglomorphic species. We propose a hypothesis of evolution of troglomorphisms during Quaternary climatic cycles.

Factors Influencing The Establishment And Survival Of Native Hardwood Tree Seedlings Of The Kentucky Inner Bluegrass Blue Ash-Oak Savanna-Woodland, James D. Shaffer

Theses and Dissertations--Biology

Historically, the Kentucky Inner Bluegrass blue ash-oak savanna-woodland was the primary ecosystem of the Inner Bluegrass Region (IBR) of Kentucky. After European settlement, the majority (>99%) of Bluegrass savanna was converted to agricultural and urban land uses. Currently remnant savanna tree species are failing to recruit. Therefore, a long-term restoration ecology project researching competition and disturbance on seedling establishment, survival, and growth has been established at Griffith Woods (the largest remaining savanna in Kentucky) in Harrison Co., KY. Fourteen native hardwood tree species (a total of 6,168 seedlings) have been experimentally planted. Light, soil, surrounding vegetation, and herbivory, factors …

The Lives Of Others: Social Rationality In Animals, Jeffrey R. Stevens, Andrew J. King

Jeffrey Stevens Publications

Darwin (1871) boldly claimed that humans and other animals differ very little in their cognition; a statement that has raised the ire of many scientists (Bolhuis & Wynne, 2009; Penn, Holyoak, & Povinelli, 2008). Rather than stating this continuity as a fact, we will explore the similarities and differences between humans and animals in the social rationality of their decision making. We find this a fruitful exercise because it can profit researchers of both humans and animals. Our purpose here is to provide an evolutionary background of social rationality: Why do animals attend to the lives of others? To this …

Ecophysiological Responses Of Tall Fescue Genotypes To Endophyte Infection And Climate Change, Marie Bourguignon

Theses and Dissertations--Plant and Soil Sciences

Tall fescue is a widely used forage grass in the eastern USA and can form a symbiosis with a fungal endophyte, which can be beneficial for the plant but can cause livestock health issues. Little is known regarding the symbiotic response to predicted climate change. To address this knowledge gap, I analyzed tall fescue variety trial data collected throughout the U.S., exploring relationships between climate variables and yield for two different fescue cultivars that were either endophyte-free or infected. This study showed no endophyte or cultivar effect on fescue yield, but identified temperature, precipitation and location as significant predictors of …

Seeds Of Resistance: Towards A Revolutionary Critical Ecopedagogy, Peter Mclaren

Education Faculty Articles and Research

The death throes of mother earth are imminent unless we decelerate the planetary ecological crisis. Critical educators, who have addressed with firm commitment topics of race, class, gender, sexuality, disability, and other social justice issues are casting their eyes to the antagonism between capitalism and nature to ask themselves how we can rationally regulate the human metabolic relation with nature. As the global power complex reduces human life and mother earth to mere production and consumption, critical revolutionary ecopedagogy is developing new, unalienated forms of selfpresence. Ecopedagogy is inspired by and inspires a new social arc, rooted in practices of …

A Reassessment Of The Conservation Status Of A Critically Endangered Neotropical Frog, Mannophryne Olmonae, Using Occupancy Modeling Techniques, Jessica Mcquigg

Senior Independent Study Theses

Amphibian species worldwide are threatened with decline and extinction, making species monitoring an important scientific endeavor. The Bloody Bay Poison Frog, Mannophryne olmonae, a Tobago island endemic, was identified as critically endangered by the IUCN in 2004. Recent evidence suggests that a less severe conservation status may be appropriate for M. olmonae. This study employs acoustic calling surveys, land-use information, and multi-year (2011 and 2012) occupancy modeling techniques to propose an appropriate conservation status for this species. This study suggests that M. olmonae occupies a larger geographic range than was previously thought, and is not experiencing population declines. …

Ecology Of The Late Neogene Extinctions: Perspectives From The Plio-Pleistocene Of Florida, Shubhabrata Paul

USF Tampa Graduate Theses and Dissertations

The ecological impact of past extinction events is one of the central issues in paleobiology. In face of present environmental changes, a better understanding of past extinctions will enable us to identify the magnitude of biodiversity crises and their underlying processes. The Late Neogene was a time of extraordinary climatic reorganization, including Northern Hemisphere glaciation, the rise of the Central American Isthmus, and associated changes in environmental conditions. Therefore, the Late Neogene extinctions of marine molluscs of South Florida present an ideal platform to examine the interaction between environmental changes and biotic response. In the present study, three different aspects …

A New Species Of Metathelazia (Nematoda: Pneumospiruridae) From The Lungs Of A Nine-Banded Armadillo In Central Mexico = Especie Nueva De Metathelazia (Nematoda: Pneumospiruridae) De Los Pulmones De Un Armadillo Del Centro De México, F. Agustín Jiménez-Ruiz, Rogelio Rosas-Valdez, Scott Lyell Gardner

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Twenty-four worms were collected from the bronchioles in both lungs of a male nine-banded armadillo Dasypus novemcinctus Linnaeus, 1758 captured in Teacalco, Morelos, Mexico. The worms, herein named Metathelazia mexicana n. sp., show a constriction in the esophagus at the level of the nerve ring; males of the species have 7 pairs of papillae, fewer than the other species in the genus. Metathelazia capsulata is the most similar species to Metathelazia mexicana; however, the latter has much shorter spicules. This is the fourth species in the genus known to occur in the New World.

Se recolectó un total de …

Differential Allocation To Photosynthetic And Non-Photosynthetic Nitrogen Fractions Among Native And Invasive Species, Jennifer L. Funk, Lori A. Glenwinkle, Lawren Sack

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Invasive species are expected to cluster on the “high-return” end of the leaf economic spectrum, displaying leaf traits consistent with higher carbon assimilation relative to native species. Intra-leaf nitrogen (N) allocation should support these physiological differences; however, N biochemistry has not been examined in more than a few invasive species. We measured 34 leaf traits including seven leaf N pools for five native and five invasive species from Hawaii under low irradiance to mimic the forest understory environment. We found several trait differences between native and invasive species. In particular, invasive species showed preferential N allocation to metabolism (amino acids) …

The Effects Of Thermal Stress And Algal Competition On The Early Life-History Stages Of Porites Astreoides And The Development Of Stress-Detecting Biomarkers For Use In Scleractinan Corals, Kevin C. Olsen

UNF Graduate Theses and Dissertations

Scleractinian coral populations are declining worldwide in response to numerous stressors operating on both global and regional scales. Rising sea surface temperatures associated with global climate change and the increasing frequency of coral-macroalgae competitive interactions are two of the gravest ecological drivers facing coral reef ecosystems. However, little is known about how these stressors interact to impact corals, their health, and potential modes of population recovery. These threats also highlight the need to develop reliable techniques that detect stress in multiple life-history stages of hermatypic corals prior to the degradation of coral reef habitats. To address these concerns we evaluated …

Leaf Traits Within Communities: Context May Affect The Mapping Of Traits To Function, Jennifer L. Funk, William K. Cornwell

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The leaf economics spectrum (LES) has revolutionized the way many ecologists think about quantifying plant ecological trade-offs. In particular, the LES has connected a clear functional trade-off (long-lived leaves with slow carbon capture vs. short-lived leaves with fast carbon capture) to a handful of easily measured leaf traits. Building on this work, community ecologists are now able to quickly assess species carbon-capture strategies, which may have implications for community-level patterns such as competition or succession. However, there are a number of steps in this logic that require careful examination, and a potential danger arises when interpreting leaf-trait variation among species …

The Importance Of Female Choice: Evolutionary Perspectives On Constraints, Expressions, And Variations, David Frederick, Tania A. Reynolds, Maryanne L. Fisher

Psychology Faculty Books and Book Chapters

This chapter introduces the reader to some of the influential perspectives on female mate choice in human evolutionary biology, including parental investment theory. We then present two key theories in evolutionary psychology that have been applied to understand variations in women’s mating preferences and choices: sexual strategies theory and strategic pluralism theory. Although the importance of female choice has gained widespread acceptance in the biological sciences, the influence that female choice has on mating systems can be limited by many factors, such as control over mating decisions by parents and men’s control over women’s sexuality. Despite these constraints on female …

Quantifying Carbon Allocation To Mycorrhizal Fungi By Temperate Forest Tree Species Across A Nitrogen Availability Gradient, Shersingh Joseph Tumber-Davila

Honors Theses and Capstones

Terrestrial ecosystems make up the largest carbon pool with a major portion of that being forests. With carbon being a major concern due to global climate change, being able to make accurate models is increasingly important. Studies have shown that trees may allocate up to 50% of their photosynthetically fixed carbon underground; however these values haven’t been accurately quantified and underground carbon allocation has been historically overlooked. Mycorrhizal fungi may be a large portion of underground carbon allocation, as they have a symbiotic relationship with trees where they provide the plant with water and nutrients in return for sugars (carbon). …

Geographic Distribution: Anolis Sagrei (Brown Anole). Usa: Florida: Escambia Co., Louis A. Somma

Papers in Herpetology

Pensacola: Agriculture Interdiction Station 1-10, Station 19: 1-10 eastbound (30.54519°N, 87.35201°W, WGS84). November 15, 2012. Katrina Simmons and Randal St. Louis. Verified by Kenneth L. Krysko, Florida Museum of Natural History, University of Florida (UF 169126). First county interdiction and westernmost vouchered specimen for the Florida Panhandle (Krysko et al. 2011. Atlas of Amphibians and Reptiles in Florida. Final report, Project Agreement 080l3, Florida Fish and Wildlife Conservation Commission, Tallahassee. 524 pp.). Currently, Anolis sagrei is not known to be established in Escambia County, but is present in adjacent Santa Rosa County and at least 54 other Florida counties (Krysko …

Promoting Amphibian Conservation Through The College Classroom: Detection Of Batrachochytrium Dendrobatidis Among Local Amphibians, Julie Wunder, Noel Lampazzi, Kelsey Acre, Nicholas Bent, Sadie Canter, Alexandra Chapman, Margaret Davies, David Kashan, Jonathan Keiley, Rachel Macintyre, Tamara Milton, Kara Weichler, Matthew Wilson, Mizuki Takahashi

Faculty Journal Articles

Many global amphibian declines have been linked to the fungal pathogen Batrachochytrium dendrobatidis (Bd). The knowledge on Bd distribution provides a fundamental basis for amphibian conservation planning. Yet, such Bd distribution information is currently insufficient, in particular at a regional scale. The college classroom provides an excellent opportunity to expand the knowledge of Bd distribution. Here we provide an example of such research projects to detect Bd prevalence among local amphibians in a college course setting and present the results of work conducted in central Pennsylvania, USA. We collected toe clips and conducted PCR assays of six species, …

Forest Regeneration On The Osa Peninsula, Costa Rica, Manette E. Sandor

Master's Theses

Woody species diversity of secondary forest has the potential to converge with that found in old growth forest. This study is the first to examine multiple aspects of species and reproductive trait diversity, and their relationship to each other, across a successional chronosequence. Species richness and species diversity increases with increasing age of forest. Diaspore size and diversity as well as fruit size generally increased with increasing age of forest, but fruit size diversity did not. Abundance of animal-dispersed species increased whereas wind-dispersed species decreased in abundance over succession. Insect-pollinated individuals were most abundant overall. Diaspore diversity, pollination diversity, and …

Marine Fungi Of U.S. Gulf Of Mexico Barrier Island Beaches: Biodiversity And Sampling Strategy, Allison Kathleen Walker

Dissertations

Marine fungi are an important but often overlooked component of marine ecosystems. Primarily saprotrophic, they are vital to coastal nutrient cycling processes and food webs. However, basic marine fungal distribution data are lacking in many parts of the world, as is knowledge of the sampling intensity required to characterize the biodiversity of these communities. The roles of substrate, season and latitude in shaping intertidal ascomycete community structure were examined for the U.S. Gulf of Mexico, and the role of sampling frequency on species richness estimates was also addressed. Best sampling practices were developed and 750 collections of beach detritus, sand …

Stopover Decisions Of Migratory Shorebirds: An Assessment Of Habitat Use, Food Availability, Behavior And Phenology, Ryan Stutzman

School of Natural Resources: Dissertations, Theses, and Student Research

Habitat loss and alteration from land use change, species invasion, and more recently, climate change has reduced biodiversity and ecosystem function worldwide. Habitat decisions have important implications to individual fitness as well as population dynamics and community structure. Resource limitation, predation, competition, and unfavorable abiotic conditions all have the potential to influence survival and future reproductive potential. Understanding how changes to ecosystem structure and function impact species and populations of conservation concern is essential for conservation delivery to be effective. Similar to many migratory species, shorebird populations are declining worldwide and declines may be related to the loss of important …

Genetic Diversity Of Neotropical Myotis (Chiroptera: Vespertilionidae) With An Emphasis On South American Species, Roxanne J. Larsen, Michelle C. Knapp, Hugh H. Genoways, Faisal Ali Anwarali Khan, Peter A. Larsen, Don E. Wilson, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

Background: Cryptic morphological variation in the Chiropteran genus Myotis limits the understanding of species boundaries and species richness within the genus. Several authors have suggested that it is likely there are unrecognized species-level lineages of Myotis in the Neotropics. This study provides an assessment of the diversity in New World Myotis by analyzing cytochrome-b gene variation from an expansive sample ranging throughout North, Central, and South America. We provide baseline genetic data for researchers investigating phylogeographic and phylogenetic patterns of Myotis in these regions, with an emphasis on South America.

Methodology and Principal Findings: Cytochrome-b sequences were generated and …

Review Of Conspecific Attraction And Area Sensitivity Of Grassland Birds, David R.W. Bruinsma, Nicola Koper

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Many species of grassland birds are area sensitive, which may exacerbate the ecological effects of the extensive loss and fragmentation of grasslands that has taken place across the northern Great Plains. However, the reasons for this area sensitivity are unclear, as vegetation structure, matrix composition, and restriction of movements among patches do not seem to provide viable explanations for species native to grasslands. Con specific attraction, whereby species are behaviorally stimulated to select habitat or establish territories near individuals of the same species, may help explain this area sensitivity. We review and discuss theoretical and empirical research on avian conspecific …