Ecology and Evolutionary Biology Commons^™

Modeling The Spread Of Sudden Oak Death Across A Heterogeneous Landscape In Redwood National Park Using A Spatially-Explicit Epidemiological Model, Laura A. Morgan

Cal Poly Humboldt theses and projects

The pathogen Phytophthora ramorum, the causal agent of Sudden Oak Death (SOD), is responsible for the deaths of millions of oak (Quercus spp.) and tanoak (Notholithocarpus densiflorus) trees in California and Oregon (USA). A recent infection in Redwood National Park (RNP) in California (USA) provided an opportunity to adapt an existing SOD model to assess the efficacy of current and proposed management strategies. A common method of SOD treatment includes killing both infected and uninfected hosts in the area of infection, as well as the area surrounding the infection to create buffers to account for undetected …

Connecting The Dots: A Food Web Of The Lower Ogeechee River, Allison K. Lutz

College of Graduate Studies: Theses & Dissertations

The Ogeechee is a fifth order river that originates in the Georgia Piedmont region and flows through the Coastal Plain region in the Southeastern portion of the state. The Ogeechee is one of the last unregulated rivers in Georgia; allowing for studies to occur under a natural flow regime. To my knowledge, studies that incorporate fish into ecological networks (e.g., food webs) are yet to be developed for the Ogeechee River, thus, one of the main objectives of this research was to address this knowledge gap. Five fish species were collected from June 2016 to October 2016 in order to …

K-Mer Analysis Pipeline For Classification Of Dna Sequences From Metagenomic Samples, Russell Kaehler

Graduate Student Theses, Dissertations, & Professional Papers

Biological sequence datasets are increasing at a prodigious rate. The volume of data in these datasets surpasses what is observed in many other fields of science. New developments wherein metagenomic DNA from complex bacterial communities is recovered and sequenced are producing a new kind of data known as metagenomic data, which is comprised of DNA fragments from many genomes. Developing a utility to analyze such metagenomic data and predict the sample class from which it originated has many possible implications for ecological and medical applications. Within this document is a description of a series of analytical techniques used to process …

High-Resolution Mapping Of Hierarchical Greater Sage-Grouse Nesting Habitat: A Grain-Spectrum Approach In Northwestern Wyoming, Robert T. Haynam Iii

Graduate Student Theses, Dissertations, & Professional Papers

Our overall objective was to create a probabilistic nesting-habitat map for the Jackson Hole sage-grouse population that would have utility as a tool for future research, conservation, and management. The models that we developed for this purpose were specified to evaluate whether sage-grouse may be selecting nesting-habitat characteristics simultaneously at various spatial scales. Our spatially-explicit landscape-scale research was implemented primarily with readily available National Agriculture Imagery Program (NAIP) data. All nesting data was collected from 2007-2010. We tested how a broad range of grain sizes (spatial resolution) of covariate values affected the fit to logistic regression models used to estimate …

Limited Evidence For Co2-Related Growth Enhancement In Northern Rocky Mountain Pinus Contorta Populations: Trends In Growth And Intrinsic Water-Use Efficiency Across Climate Gradients, Charlotte C. Reed

Graduate Student Theses, Dissertations, & Professional Papers

Forests sequester large amounts of carbon annually; however, the degree to which enhanced forest productivity is due to more conducive climate or CO₂ fertilization remains uncertain. Increasing atmospheric CO₂ may enhance photosynthesis and/or decrease stomatal conductance thereby enhancing intrinsic water use efficiency (iWUE). While increasing iWUE has been observed in most trees globally, this increase does not necessarily translate into greater growth. This study aims to evaluate whether responses of radial growth and iWUE to increasing CO₂ vary across climatic gradients. To investigate interactions between climate and CO₂ and their impacts on tree physiology and growth, …

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Integrating Habitat Suitability Modeling And Radio Telemetry To Describe Habitat Use Of The Western Massasaugas, Sistrurus T. Tergeminus, In Texas, Mitchell R. Barazowski

Biology Theses

Habitat suitability modeling using the software package MaxEnt (Phillips, Anderson, & Schapire, 2006) is a popular method for describing the habitat of rare species. MaxEnt uses “presence only” data to develop models; however presence data are highly skewed towards areas of high detection probability and these areas may not represent the full range of habitat use. Thusly, predictions from models developed using only data from areas with high detection probability may not represent all suitable habitat. This study tested the ability of MaxEnt models developed using three different data sets to accurately describe Western Massasauga (Sistrurus t. tergeminus) habitat at …

Lilliput Effect Dynamics Across The Cretaceous-Paleogene Mass Extinction: Approaches, Prevalence, And Mechanisms, Matthew Brett Jarrett

USF Tampa Graduate Theses and Dissertations

An organism's body size entails both physiological and ecological costs. Furthermore, as a parameter in analyzing organisms, it represents a fundamental and essential morphometric character. Reductions in size following mass extinction is a commonly observed phenomenon in the fossil record. This study examines the evolutionary significance of this phenomenon termed the: 'Lilliput Effect' by proposing that it represents a rapid evolutionary response to altered selection pressures during a mass extinction. This primary hypothesis is evaluated against two additional hypotheses of size reduction: 1) stunted growth as a response to stressed ecosystems, and/or 2) mass extinctions are size selective.

These hypotheses …

Punctuated Evolution Within A Eurythermic Genus (Mesenchytraeus) Of Segmented Worms: Genetic Modification Of The Glacier Ice Worm F1f0 Atp Synthase, Shirley A. Lang

Graduate School of Biomedical Sciences Theses and Dissertations

Segmented worms (Annelida) are among the most successful animal inhabitants of extreme environments worldwide. An unusual group of Mesenchytraeus worms endemic to the Pacific Northwest of North America occupy geographically proximal ecozones ranging from low elevation temperate rainforests to high altitude glaciers. Along this altitudinal transect, Mesenchytraeus representatives from disparate habitat types were collected and subjected to deep mitochondrial and nuclear phylogenetic analyses. Evidence presented here employing modern bioinformatic analyses (i.e., maximum likelihood, Bayesian inference, multi-species coalescent) supports a Mesenchytraeus “explosion” in the upper Miocene (5-10 million years ago) that gave rise to ice, snow and terrestrial worms, derived from …

How Do Designers Of The Built Environment Attempt To Make Ecological Sustainability Sensory Legible?, Carly L. Bartow

Architecture Undergraduate Honors Theses

This paper attempts to provide a theoretical framework for making ecosystem function and ecologically sustainable design more perceptible or sensible to people through architecture and the built environment. Design features of the Bertschi School Science Wing and the Bullitt Center in Seattle, Washington are incorporated to illustrate the sensory legibility of ecological sustainability criteria.The criteria are available to designers to help educate a building's occupants on environmentally sustainable design and motivate more sustainable behavior.

An Analysis Of Morphometric Differentiation In Lake And River Populations Of The Emerald Shiner, Notropis Atherinoides, John J.V. Lang

Biology Theses

Understanding mechanisms that account for phenotypic variation has been of interest to biologists since the advent of Darwin’s theory of evolution by natural selection. It is now understood that adaptive divergence is a key driving force of intraspecific differentiation. Further, differences in habitat (e.g., flow regime, prey regime) have been shown to drive adaptive divergence in fish. For instance, fish inhabiting faster flowing water generally exhibit more fusiform bodies than their lake counterparts. Similarly, the partitioning of benthic and pelagic morphs generally results in smaller heads with the latter. This study used geometric shape analysis to assess morphological differences between …

Monk Parakeets, Michael L. Avery, James R. Lindsay

Wildlife Damage Management Technical Series

Since their introduction to the United States in the 1960s, monk parakeets (Myiopsitta monachus) have thrived (Figure 1). Until recently, annual Christmas Bird Count data have shown the population to be increasing exponentially. In the U.S., monk parakeets are an urban and suburban species with few natural predators, diseases or other factors limiting their population growth. They exploit backyard bird feeders and non-native ornamental plants for food. Monk parakeets often construct nests on man-made structures, such as electric utility facilities and cell phone towers. Because the birds build and maintain nests throughout the year, management of parakeet populations …

Using Cellular Automata To Model The Gun Violence Epidemic In Chicago, Il, Shelby Scott

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Cedar Waxwings, Michael L. Avery, Anthony G. Duffiney

Wildlife Damage Management Technical Series

Prevention and control of cedar waxwing (Bombycilla cedrorum) damage to small fruits such as blueberry, cherry, and strawberry is vexing to growers in many parts of the United States. Cedar waxwings (Figure 1) travel in flocks and descend in large numbers on berry crops, especially during winter and migration. In short feeding bouts, waxwings eat, peck, or knock substantial amounts of fruit from the plants. These frugivores are difficult to discourage once they become established at a given location. Harassment early and often using pyrotechnics or other sudden noisemakers can help prevent flocks from being established. The most effective preventative …

The Role Of Individual Cognitive And Behavioral Ontogeny In Organization And Evolution Of Social Systems, Andrew G. Fulmer

Dissertations, Theses, and Capstone Projects

Exploration and explanation of the relationship between individual variation in behavior and the composition and adaptive success of social groups or populations are crucial problems in the fields of behavioral ecology, ethology, and comparative psychology. These questions have been the subject of a longstanding discussion at both the proximate and ultimate levels of inquiry. Adaptive mechanisms explaining social decision making, both in terms of affiliative and competitive partner choices, are at the center of such discussions. Inclusive fitness, kin-selection, handicap or prestige, risk seeking and risk avoiding strategies, pay-to-stay/reward principles, as well as other theories have been proposed and supported …

Impacts Of Fog Drip On Survivorship And Growth Of Native Herb And Shrub Seedlings On Santa Rosa Island, Julianne Bradbury, Ken Niessen, Kathryn Mceachern

STAR Program Research Presentations

Overgrazing on Santa Rosa Island led to loss of topsoil in ridgeline groves of endemic island oaks (Quercus tomentella). Restoration specialists attempting to mitigate the impacts of wind and water erosion must determine efficient methods of reestablishing native vegetation. Planting pillows, burlap sacks filled with planting mix and attached to the bedrock substrate, may nurture seedlings long enough for their roots to penetrate the underlying sandstone. Since the island’s ridgeline habitat is often inaccessible during the rainy season, restoration efforts are largely confined to the dry summer months, during which condensed fog is an important source of moisture …

The Effect Of Prescribed Fires On Vernal Herbs, Janis Lemaster

Mahurin Honors College Capstone Experience/Thesis Projects

The effects of fire on vernal herbs are little known. David Kem attempted to assess the influences of spring and winter prescribed fires on vernal herbs by collecting abundance data on three sets of research plots located at the WKU Green River Preserve in Hart County, KY, on April 9-10, 2010. On April 10 he conducted spring burns, and on February 22, 2011, he conducted winter burns. He then collected post-fire data on the abundance of the herbs on the 12-19 of March, 2011. He found little influence of fire on overall species richness and the density of common species. …

The Role Of Habitat Shaping Motion Detection In Two Songbirds, Elena A. Ritschard, Luke P. Tyrrell, Esteban Fernández-Juricic

The Summer Undergraduate Research Fellowship (SURF) Symposium

Double cones of birds are photoreceptors associated with motion perception, and perceiving motion is highly important to detect predators. Predation risks varies between habitats and may impose selective pressures that could affect organisms’ traits. There is evidence that birds show interspecific variations in visual system properties, such as the photoreceptor densities (single and double cones) and distribution across the retina. However, little is known about the relationship between the distribution of double cones and predator scanning strategies in birds living in different habitats. The goal of this study was to compare double cones distributions of birds that live in open …

Effects Of Soil Erosion Barriers On Percent Cover And Sediment Size, Michael Perez

STAR Program Research Presentations

Ranching began on Santa Rosa Island in the 1840’s, introducing nonnative megafauna that put selective grazing pressures on endemic species. Dense groves of island oak (Q. tomentella) are aid in sediment deposition and retention. A current restoration effort, involved installing soil erosion barriers, known as wattles, to prevent sediment from being lost upslope and recruit plant growth whose root systems could further stabilize the slope. This experiment was designed to compare percent cover of vegetation growth in areas with and without soil erosion barriers. This was done using the line intercept method (n=42) on three meter transects, measuring …

Effects Of Invasive Shrub Honeysuckle (Lonicera Maackii) And Forest Composition On Bird Communities In Woodland Stands., Katie Rae Lynch

Electronic Theses and Dissertations

Invasive species pose a threat to aquatic and terrestrial ecosystems by decreasing biodiversity (Didham et al. 2005). Amur bush honeysuckle (Lonicera maackii) has typically reduced native plant diversity and altered animal communities by influencing animal abundance and activity (Collier and Vankat 2002). This study was intended to determine whether honeysuckle density or other characteristics of forested stands influence avian diversity, whether impacts are seasonally dependent, and whether correlations exist between attributes of forested stands and honeysuckle density. In order to test the hypotheses, thirteen forest stands within the Louisville Metropolitan Area were selected. They had similar tree composition …

Exploring The Relationship Between Behaviour And Neurochemistry In The Polyphenic Spider, Anelosimus Studiosus (Araneae: Theridiidae), Jennifer B. Price

Electronic Theses and Dissertations

The importance of social behaviour is evident in human society, but there are both costs and benefits associated with cooperation and sociality throughout the animal kingdom. At what point do the benefits outweigh the costs, and when do selective pressures favour sociality and colonization over solitude and independence? To investigate these questions, we have focused on an anomalous species of spider, Anelosimus studiosus, also known now as the northern social spider. Throughout its broad range, A. studiosus is solitary and aggressive, but recently, colonies of cooperative and social individuals have been observed at northern latitudes. This leads to two …

Forest Islands In A Sea Of Urban Habitat, Michael J. Olejniczak

Biology Theses

Urban forests are poorly defined as ecological communities. Substantive links between anthropogenic landscape features and forest ecology are lacking. ‘Urbaness’ is commonly defined by human population density or land use classifications, but their use is inconsistent throughout the literature, and rarely is linked with ecological processes. Furthermore, it is unknown whether urban forests are functioning parts of a patchy urban woodland system or isolated islands amidst an ocean of unsuitable habitat. I first used digital satellite imagery and publicly available U.S. National Park data to link urban land use with forest processes. I then linked those land use classifications with …

Blackbirds, Richard A. Dolbeer, George M. Linz

Wildlife Damage Management Technical Series

The term blackbird loosely refers to a diverse group of about 10 species of North American birds that belong to the avian family Icteridae. The most common species include: Red-winged blackbird (Agelaius phoeniceus) Common grackle (Quiscalus quiscula) Great-tailed grackle (Quiscalus mexicanus) Brown-headed cowbird (Molothrus ater) Yellow-headed blackbird (Xanthocephalus xanthocephalus) Brewer’s blackbird (Euphagus cyanocephalus) Rusty blackbird (Euphagus carolinus) In addition to blackbirds, this family includes orioles, meadowlarks, and bobolinks.

Human-Wildlife Conflicts 1 Damage Identification 3 Management Methods 4 Economics 7 Species Overview 8 Legal Status 11 Glossary …

Double-Crested Cormorants, Brian S. Dorr, Kristi L. Sullivan, Paul D. Curtis, Richard Chipman, Russell D. Mccullough

Wildlife Damage Management Technical Series

The history of conflict between double-crested cormorants (Figure 1) and human interest in fisheries is long and convoluted. Following a low point in the 1970s, populations of cormorants expanded in North America, as did concerns about impacts on fisheries. By the late 1990s, natural resource agencies in 27 states reported losses of free-ranging fish stocks to cormorants. Agencies in 10 states, ranging from the Southwest to the Northeast, considered cormorant predation to be of moderate to major concern to fishery management.

Overall, double-crested cormorants are not major consumers of commercial and sportfish species. However, exceptions have been recorded at specific …

Bird Dispersal Techniques, Thomas W. Seamans, Allen L. Gosser

Wildlife Damage Management Technical Series

Conflicts between humans and birds likely have existed since agricultural practices began. Paintings from ancient Greek, Egyptian, and Roman civilizations depict birds attacking crops. In Great Britain, recording of efforts at reducing bird damage began in the 1400s, with books on bird control written in the 1600s. Even so, the problem persists. Avian damage to crops remains an issue today, but we also are concerned with damage to homes, businesses, and aircraft, and the possibility of disease transmission from birds to humans or livestock. Successful dispersal techniques should capitalize on bird sensory capabilities. If birds cannot perceive the dispersal technique, …

Geese, Ducks And Coots, John L. Cummings

Wildlife Damage Management Technical Series

Canada geese, snow geese, ducks, and American coots all have been implicated in agricultural crop and turf damage. Canada geese and snow geese that graze on winter wheat and rye crops can reduce subsequent grain and vegetative yields. Canada geese also cause serious damage to sprouting soybeans in spring and to standing cornfields in the autumn. The most common damage to agricultural resources associated with geese results from consumption of crops. Other impacts involve unacceptable accumulations of feces in pastures, trampling of emerging crops, and increased erosion and runoff from fields where the cover crop has been grazed. Canada geese …

Effect Of Dung Beetles On Dung Decomposition And Nutrient Cycling In A Nebraska Rangeland, Kenneth Shay Evans

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Management practice can have impacts on the abundance and frequency of dung beetle populations and nutrient cycling in grazing systems. Also, agriculture and livestock production land use is a considerable source of anthropogenic greenhouse gas (GHG) emissions, which are known to be one of the causes of global climate change. In this study, we evaluated the effect of dung beetle presence on the fluxes of greenhouse gasses (GHG’s) from dung pats in the semi-arid Sandhills region of Nebraska, by using closed chambers to measure the fluxes of carbon dioxide (CO₂), methane (CH₄) and nitrous oxide (N …

Gyrfalcon Diet During The Brood Rearing Period On The Seward Peninsula, Alaska, In The Context Of A Changing World, Bryce W. Robinson

Boise State University Theses and Dissertations

As climate change impacts increase so does our need to understand their effects on ecosystem dynamics. I studied Gyrfalcon (Falco rusticolus) diet during the brood rearing period to improve our knowledge on dietary habits during nesting, and provide necessary information for understanding climate change impacts to Arctic ecosystems. I studied diet over two breeding seasons on the Seward Peninsula, Alaska, using two methods: motion-activated cameras and the collection of prey remains. I observed three important dietary shifts: the proportion of ptarmigan in the diet declined significantly throughout the season, the proportion of large prey items declined significantly throughout …

Genetic Analysis Of Eurasian Populations Of Taeniatherum Caput-Medusae Subspecies Asperum: Biogeography Of An Invasive, Self-Pollinating, Annual Grass In Its Native Range, Peter Guerdan

Boise State University Theses and Dissertations

Understanding species’ distributions provides a comprehensive biogeographical framework with which to evaluate theoretical and applied ecological and evolutionary questions. To date, few studies have used amplified fragment length polymorphisms (AFLPs) to assess the biogeographical patterns of a broadly distributed grass species, and none that I have found used AFLPs to specifically study biogeographical patterns of an invasive annual grass in its native range. The overall objective of my study was to assess the biogeographic pattern of the invasive, self-pollinating, annual grass Taeniatherum caput-medusae subspecies asperum (medusahead) in its native range in Eurasia using AFLPs. Seventy populations of medusahead from 13 …

The Effectiveness Of Periodically-Harvested Closures In Meeting Ecological And Socioeconomic Objectives, Paul G. Carvalho

Master's Theses

Periodically-harvested fisheries closures (PHCs) are a widespread form of community-based marine spatial management used throughout the Indo-Pacific that also is currently being intensively advocated by conservation organizations for supporting productive fisheries and healthy marine ecosystems. However, local implementation of PHCs has historically been designed to support occasional and efficient exploitation of fish stocks, and not necessarily sustainable fisheries yields and stock conservation. The efficacy of PHCs for achieving their historical cultural objectives of periodicity and efficiency of harvest, simultaneously with achieving contemporary fisheries objectives of fisheries productivity and conservation is undetermined. As a result, the utility of PHCs for supporting …