Ecology and Evolutionary Biology Commons^™

A Case Study Of Rhincodon Typus Scarring In Ningaloo Reef: An Assessment Of The Current Scarring Classification System, Laura Korman

Independent Study Project (ISP) Collection

Rhincodon typus are the largest fish in the sea, but little is understood about this elusive species. They are known to annually aggregate in Ningaloo Reef, Western Australia—the location of this study. In order to better understand this species, scarring was observed on a subset of the population that aggregates in Ningaloo Reef. In addition, the scarring classification system was examined to determine if it is the most effective classification system. R. typus were observed, and photographed from April 9th-April 25th, 2014. These photos were then used for identification and scarring classification purposes. The analysis of the scars on R. …

Determination Of The Ecological Condition Of Benthic Communities Affected By Polycyclic Aromatic Hydrocarbons In The Elizabeth River, Chesapeake Bay, Usa, Adam M. Webb

Biological Sciences Theses & Dissertations

The Southern Branch of the Elizabeth River, a tributary of Chesapeake Bay, has historically been polluted with hydrocarbon based industrial by-products. My study compared benthic community condition from two locations in the Southern Branch: the subtidal region near Money Point, historically affected by pollution of polycyclic aromatic hydrocarbons (PAHs), to a subtidal region near Blows Creek on the opposite shore that is putatively designated as unimpacted by P AH contamination. Samples from both study sites in the Southern Branch were compared to the benthic community condition of samples from the same habitat type designations collected as part of the Chesapeake …

Benthic And Planktonic Microalgal Community Structure And Primary Productivity In Lower Chesapeake Bay, Matthew Reginald Semcheski

Biological Sciences Theses & Dissertations

Microalgal populations are trophically important to a variety of micro- and macroheterotrophs in marine and estuarine systems. In Chesapeake Bay, microalgae facilitate the survival and development of ecologically and economically relevant fauna, including shellfish and finfish populations. While regarded as significant components of coastal environments, microphytobenthic communities are historically understudied. In Chesapeake Bay, the importance of phytoplankton to the ecosystem is understood, but the contribution of microphytobenthos remains unclear. This project surveys intertidal microphytobenthic communities, in relation to phytoplankton communities, around lower Chesapeake Bay describing the taxonomic makeup of these populations, coupled with quantification of cell abundance, biomass, and primary …

State Of The U.S. Ocean And Coastal Economies 2014, Judith T. Kildow, Charles S. Colgan, Jason D. Scorse, Pat Johnston, Matt Nichols

Publications

The nation's coasts and oceans contribute much to the United States economy. For the past 14 years, the National Ocean Economics Program (NOEP), now a program of the Center for the Blue Economy at the Monterey Institute of International Studies, has compiled time-series data that track economic activities, demographics, ports and cargo volume and value, natural resource production and value, non-market values, and federal expenditures in the U.S. coastal zone both on land and in the water. A report on the ocean and coastal economies of the United States was released by NOEP in 2009 covering data through 2005. The …

Utilization Of The Invasive Alga Gracilaria Vermiculophylla (Ohmi) Papenfuss By The Native Mud Snail Ilyanassa Obsoleta (Say), Michele Guidone, Christine Newton, Carol S. Thornber

Biology Faculty Publications

The recent invasions of the red alga, Gracilaria vermiculophylla, to the Atlantic and Eastern Pacific Oceans have the potential to significantly alter intertidal and subtidal soft sediment communities. In particular, G. vermiculophylla increases habitat complexity and provides a novel hard substrate in an otherwise two dimensional habitat. Following our observations that the native omnivorous mud snail Ilyanassa obsoleta utilizes G. vermiculophylla for egg capsule deposition, our field surveys demonstrated that the in situ abundance of egg capsules on G. vermiculophylla matched abundances on a native alga Ceramium virgatumandwere at least 11–50 times greater than on all other co-occurring macrophytes. Additionally, …

Evaluating Trends In Valve Shape In Eunotia By Comparing Fossil And Modern Species, Jordan Bishop-Genovesi

Environmental Studies Honors Papers

No abstract provided.

An Introduction To Marine Invasive Species, Teresa Berndt, Natasha Bourdon, Rebecca Buchanan, Abigail Doane, Laura Doyle, Jacob Farrell, Angela Henrich, Blaise Jenner, Christopher Lockwood, Ashleigh Novak, Kiera O'Donnell, Hanna Pultorak, Wyler Scamman, Alec Strohmeyer, Keenan Tilsley, Markus Frederich

Marine Sciences Student Projects

Countless marine species are invading new environments with devastating effects on the ecosystem, the local and global economy, and on human health. The frequency of marine invasions has been increasing in recent decades with a respective raised interest of invasive species in the scientific community, and the general public. The Aquatic Invasive Species class (MAR442) at the University of New England offers an informative overview of invasive species, targeting educated readers with a general interest in invasive species biology. Students in the MAR 442 class have worked on identifying the most important topics on marine invasive species, have reviewed the …

Piscataqua Region Environmental Planning Assessment 2015, Piscataqua Region Estuaries Partnership

PREP Reports & Publications

This is the second assessment of land use regulations and planning practices in our watershed, and provides an important understanding of how we are managing our community’s natural resources. Although progress in protecting water quality has been made, management actions are inconsistent across the watershed and even within sub watersheds. In order to protect the places we live, and accommodate growth. It is clear that purposeful coordination and consistency is critical to success in improving water quality and minimizing community costs associated with pollution and impacts from intensifying weather events.

Fall 2014, Nsu Oceanographic Center

Currents

No abstract provided.

Spring 2014, Nsu Oceanographic Center

Currents

No abstract provided.

Angler Effort And Catch Within A Spatially Complex System Of Small Lakes, Christopher J. Chizinski, Dustin R. Martin, Kevin L. Pope, Tony J. Barada, Jeffrey J. Schuckman

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Spatial layout of waterbodies and waterbody size can affect a creel clerk’s ability to intercept anglers for interviews and to accurately count anglers, which will affect the accuracy and precision of estimates of effort and catch. This study aimed to quantify angling effort and catch across a spatially complex system of19 small (<100 ha) lakes, the Fremont lakes. Total (±SE) angling effort (hours) on individual lakes ranged from 0 (0) to 7,137 (305). Bank anglers utilized 18 of the 19 lakes, and their mean (±SE) trip lengths(hours) ranged from 0.80 (0.31) to 7.75 (6.75), depending on the waterbody. In contrast, boat anglers utilized 14 of the 19 lakes, and their trip lengths ranged from 1.39 (0.24) to 4.25 (0.71), depending on the waterbody. The most sought fishes, as indexed by number of lakes on which effort was exerted, were anything (17 of 19 lakes), largemouth bass Micropterus salmoides (15 of 19 lakes), and channel catfish Ictalurus punctatus (13 of 19 lakes). Bluegill Lepomis machrochirus, crappie Pomoxis spp., and largemouth bass were caught most frequently across the lakes, but catch rates varied considerably by lake. Of the1,138 parties interviewed, most parties (93%) visited …

Monitoring Ship Noise To Assess The Impact Of Coastal Developments On Marine Mammals, Nathan D. Merchant, Enrico Pirotta, Tim R. Barton, Paul M. Thompson

Biology - All Scholarship

The potential impacts of underwater noise on marine mammals are widely recognised, but uncertainty over variability in baseline noise levels often constrains efforts to manage these impacts. This paper characterises natural and anthropogenic contributors to underwater noise at two sites in the Moray Firth Special Area of Conservation, an important marine mammal habitat that may be exposed to increased shipping activity from proposed offshore energy developments. We aimed to establish a pre-develop- ment baseline, and to develop ship noise monitoring methods using Automatic Identification System (AIS) and time-lapse video to record trends in noise levels and shipping activity. Our results …

Extinction Risk And Conservation Of The World's Sharks And Rays, Nicholas K. Dulvy, Sarah L. Fowler, John A. Musick, Rachel D. Cavanagh, Peter M. Kyne, Lucy R. Harrison, John K. Carlson, Lindsay N. K. Davidson, Sonja V. Fordham, Malcolm P. Francis, Caroline M. Pollock, Colin A. Simpfendorfer, George H. Burgess, Kent E. Carpenter, Leonard J. V. Compagno, David A. Ebert, Claudine Gibson, Michelle R. Heupel, Suzanne R. Livingstone, Jonnell C. Sanciangco, John D. Stevens, Sarah Valenti, William T. White

Biological Sciences Faculty Publications

The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes-sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other …

Concordance Between Phylogeographic And Biogeographic Boundaries In The Coral Triangle: Conservation Implications Based On Comparative Analyses Of Multiple Giant Clam Species, Timery S. Deboer, Maria Rio Abdon Naguit, Mark V. Erdmann, Maria Carmen A. Ablan-Lagman, Ambariyanto, Kent E. Carpenter, Abdul Hamid A. Toha, Paul H. Barber

Biological Sciences Faculty Publications

Marine habitats are in decline worldwide, precipitating a strong interest in marine conservation. The use of biogeographic data to designate ecoregions has had significant impacts on terrestrial conservation efforts. However, classification of marine environments into ecoregions has only become available in the last several years, based on biogeographic data supplemented by geomorphology, ocean currents, and water temperatures. Here we use a comparative phylogeographic approach to test for concordant phylogeographic patterns in three closely related species of Tridacna giant clams across the Coral Triangle, the most biodiverse marine region in the world and one of the most threatened. Data from a …

Integrating Societal Perspectives And Values For Improved Stewardship Of A Coastal Ecosystem Engineer, Steven B. Scyphers, J. Steven Picou, Robert D. Brumbaugh, Sean P. Powers

University Faculty and Staff Publications

Oyster reefs provide coastal societies with a vast array of ecosystem services, but are also destructively harvested as an economically and culturally important fishery resource, exemplifying a complex social-ecological system (SES). Historically, societal demand for oysters has led to destructive and unsustainable levels of harvest, which coupled with multiple other stressors has placed oyster reefs among the most globally imperiled coastal habitats. However, more recent studies have demonstrated that large-scale restoration is possible and that healthy oyster populations can be sustained with effective governance and stewardship. However, both of these require significant societal support or financial investment. In our study, …

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …

Host Behavior Alters Spiny Lobster-Viral Disease Dynamics: A Simulation Study, Thomas W. Dolan Iii, Mark J. Butler Iv, Jeffrey D. Shields

Biological Sciences Faculty Publications

Social behavior confers numerous benefits to animals but also risks, among them an increase in the spread of pathogenic diseases. We examined the trade-off between risk of predation and disease transmission under different scenarios of host spatial structure and disease avoidance behavior using a spatially explicit, individual-based model of the host pathogen interaction between juvenile Caribbean spiny lobster (Panulirus argus) and Panulirus argus Virus 1 (PaV1). Spiny lobsters are normally social but modify their behavior to avoid diseased conspecifics, a potentially effective means of reducing transmission but one rarely observed in the wild. We found that without lobster avoidance of …

Effects Of Predation Upon The Long-Spined Sea Urchin Diadema Antillarum By The Spotted Spiny Lobster Panulirus Guttatus, Meredith D. Kintzing, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sea urchins, important herbivores in marine ecosystems, are strongly impacted by both the direct and indirect effects of predation, and the long-spined sea urchin Diadema antillarum is no exception. Once abundant on Caribbean coral reefs, D. antillarum populations were decimated by disease in the early 1980s, and only where their natural predators have been over-fished has D. antillarum recovery been observed. Spiny lobsters (Palinuridae) are predators of sea urchins, and although there are several species of spiny lobster in the Caribbean, only the spotted spiny lobster Panulirus guttatus is restricted to coral reefs where D. antillarum dwells. We investigated the …

Sarpa Salpa Herbivory On Shallow Reaches Of Posidonia Oceanica Beds, Latina Steele, Kelly M. Darnell, Just Cebrián, Jose Luis Sanchez-Lizaso

Biology Faculty Publications

Sarpa salpa herbivory on shallow reaches of Posidonia oceanica beds.— Here, we examined the temporal and small–scale spatial variability of grazing by the herbivorous fish Sarpa salpa on shallow beds of the temperate seagrass Posidonia oceanica. Herbivory intensity expressed as the percent of leaf area taken by fish bites was higher in September 2006 than in February 2007, and at 0.5 m than at 1.5 m during both sampling times. All S. salpa feeding at the shallow locations studied were juveniles, with bite sizes ranging from 0.03 to 0.62 cm2. Juveniles feeding at 1.5 m were larger in February 2007 …

Influence Of Hydrological And Environmental Conditions On Mangrove Vegetation At Coastal And Inland Semi-Arid Areas Of The Gascoyne Region, Natasha Robin Dunham

Theses: Doctorates and Masters

Mangrove stands are uncommon within semi-arid climates and rare within inland systems. It is uncertain whether the same environmental variables influence mangroves growing in a semi-arid climate as the trees growing in tropical and sub-tropical areas. Field studies conducted on the ecophysiological responses of the mangrove species Avicennia marina are few; however hydrological regimes are considered the key factor influencing mangrove stand zonation, structure and individual tree growth. The Gascoyne region of Western Australia provides a unique opportunity to investigate whether mangroves growing within an inland semi-arid environment display similar growth patterns and ecophysiological responses to their coastal counterparts.

This …

Concordant Phylogenetic Patterns Inferred From Mitochondrial And Microsatellite Dna In The Giant Clam Tridacna Crocea, Timery S. Deboer, Ma Rio Abdon Naguit, Mark V. Erdmann, Maria Carmen A. Ablan-Lagman, Ambariyanto, Kent E. Carpenter, Abdul Hamid A. Toba, Paul H. Barber

Biological Sciences Faculty Publications

The boring giant clam, Tridacna crocea Lamarck, 1819, is a CITES-listed bivalve that is declining due to overharvest and environmental degradation. Previous molecular studies in the Coral Triangle using mitochondrial DNA indicated the presence of deep phylogenetic divergence and strong phylogeographic structure across this region, suggesting the possibility of multiple cryptic species. In the present study, we compare data from non-recombining mitochondrial (mtDNA; cytochrome oxidase subunit 1, COI) and eight microsatellite loci to better understand patterns of genetic structure and species boundaries in T. crocea populations across Indonesia and the Philippines. Microsatellite loci and mtDNA data from 618 individuals representing …

Developing Important Marine Mammal Area Criteria: Learning From Ecologically Or Biologically Significant Areas And Key Biodiversity Areas, Collenn M. Corrigan, Jeff A. Ardron, Mia T. Comeros-Raynal, Erich Hoyt, Giuseppe Notarbartolo Di Sciara, Kent E. Carpenter

Biological Sciences Faculty Publications

1. This paper explores how criteria to identify important marine mammal areas (IMMAs) could be developed, and nested in existing global criteria. This process would consider 134 species of marine mammals. 2. Particular attention is given to two suites of global criteria to identify areas important for the persistence of marine biodiversity: Ecologically or Biologically Significant Areas (EBSAs) developed through the Convention on Biological Diversity (CBD), and Key Biodiversity Areas (KBAs) in revision through the International Union for the Conservation of Nature (IUCN). They are seen as mutually complementary in the development of IMMAs. 3. The specificities necessary for identifying …

Assessing The Responses Of Adult, Juvenile, And Larval Fish Assemblages To The Closure Of The Mississippi River Gulf Outlet, An Artificial Tidal Pass In Southeastern Louisiana, Rebecca Weatherall Cope

LSU New Orleans Theses and Dissertations

The creation of the Mississippi River Gulf Outlet (MRGO) in 1963 by the U.S. Army Corps of Engineers (USACE) represents one of the most catastrophic, anthropogenic stressors ever to impact the Lake Pontchartrain estuary in southeastern Louisiana, USA. The artificial tidal pass provided a direct route from the Gulf of Mexico to New Orleans. It allowed for high saline waters to enter Lake Pontchartrain, resulting in detrimental changes to the biotic community of the Lake and surrounding wetland areas. In July 2009, the USACE closed the MRGO in hopes of restoring natural ecosystems. This study assesses changes in the adult, …

Development And Application Of A Gis-Based Long Island Sound Eelgrass Habitat Suitability Index Model, Jamie M.P. Vaudrey, Justin Eddings, Christopher Pickerell, Lorne Brousseau, Charles Yarish

Department of Marine Sciences

The primary objectives of the Eelgrass Habitat Suitability Index Model (EHSI Model) are to assist in the evaluation of sites being considered for eelgrass restoration efforts in the Long Island Sound (LIS) area and to identify areas where water quality issues reduce or eliminate the potential for natural eelgrass colonization. To achieve this goal, geospatial processing of data available from the Long Island Sound area was conducted using ArcGIS v10.0 including the 3D Analyst and Spatial Analyst extensions. The result is a series of maps presented in this report and a GIS-based model available for users to interact with the …

Growth Of Tropical Dasyatid Rays Estimated Using A Multi-Analytical Approach, Owen R. O'Shea, Matias Braccini, Rory Mcauley, Conrad W. Speed, Mark G. Meekan

Fisheries Research Articles

We studied the age and growth of four sympatric stingrays: reticulate whipray, Himanutra uarnak (n=19); blue mask, Neotrygon kuhlii (n=34); cowtail, Pastinachus atrus (n=32) and blue-spotted fantail, Taeniura lymma (n=40) rays at Ningaloo Reef, a fringing coral reef on the north-western coast of western Australia. Age estimates derived from band counts within sectioned vertebrae ranged between 1 and 27 years (H. uarnak, 1 - 25 yrs.; N. kuhlii, 1.5 - 13 yrs.; P. atrus, 1 - 27 yrs. and T. lymma, 1 -11 yrs.). Due to limitations of sample sizes, we combined several analytical methods …

Novel Pathways For Injury From Offshore Oil Spills: Direct, Sublethal And Indirect Effects Of The Deepwater Horizon Oil Spill On Pelagic Sargassum Communities, Sean P. Powers, Frank J. Hernandez, Jr, Robert H. Condon, J. Marcus Drymon, Christopher M. Free

University Faculty and Staff Publications

The pelagic brown alga Sargassum forms an oasis of biodiversity and productivity in an otherwise featureless ocean surface. The vast pool of oil resulting from the Deepwater Horizon oil spill came into contact with a large portion of the Gulf of Mexico’s floating Sargassum mats. Aerial surveys performed during and after the oil spill show compelling evidence of loss and subsequent recovery of Sargassum. Expanding on the trends observed in the aerial surveys, we conducted a series of mesocosm experiments to test the effect of oil and dispersants on the vertical position and weight of the Sargassum complex ( …

The General Qapp For Long Island Sound Volunteer Coastal Monitoring (With Adoption Form), Jamie M.P. Vaudrey, Kimberly Gallagher

Department of Marine Sciences

The General QAPP for Long Island Sound Volunteer Coastal Monitoring is designed to streamline the process of writing a QAPP for Monitoring Programs in the Long Island Sound area. This document does not replace guidance on developing a program and is not sufficient as a stand-alone document to guide the initial development and sample design process for a monitoring program.

Evaluation Of Current Community-Based Monitoring Efforts And Recommendations For Developing A Cohesive Network Of Support For Monitoring Long Island Sound Embayments., Jamie M.P. Vaudrey, Jamie Alonzo, Adrienne Esposito, Curt Johnson, Maureen Dolan Murphy, Charles Yarish

Department of Marine Sciences

This project focuses on Long Island Sound embayments and represents an exploration of the potential for coordination among community-based water quality monitoring groups, and coordination between community-based groups and data end users, including scientists and managers. Community-based monitoring groups represent a potential valuable source of water quality information. The development of standardized protocols, training methods and reporting procedures will serve to provide end users with the confidence necessary to utilize the data collected as part of community-based monitoring programs. Both groups of stakeholders stand to benefit from this type of coordination with the ultimate benefit being a healthier, better understood …

Review Of Report On The “Status Of Nearshore Finfish Stocks In South-Western Western Australia: Australian Herring And Tailor”, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Biofouling : A Means Of Aquatic Species Transfer, Anne Bouyssou, Josefin Madjidian

NSBWO

Ships carry seawater in their ballast tanks when they are not fully loaded with cargo, in order to maintain adequate trim, draught and stability, adjust list and limit stresses on the hull. It is now well documented that the water pumped into the ship contains aquatic organisms – which can also sink to the sediments at the bottom of tanks – and that these organisms are thereby transferred from the port of origin to the destination. But it is seldom mentioned that aquatic organisms are also found on the outside of ships, attached on their hulls and appendages, as a …