Ecology and Evolutionary Biology Commons^™

Rattus Norvegicus As A Biological Detector Of Clandestine Remains And The Use Of Ultrasonic Vocalizations As A Locating Mechanism, Gabrielle M. Johnston

Master's Theses

In investigations, locating missing persons and clandestine remains are imperative. One way that first responder and police agencies can search for the remains is by using cadaver dogs as biological detectors. Cadaver dogs are typically used due to their olfactory sensitivity and ability to detect low concentrations of volatile organic compounds produced by biological remains. Cadaver dogs are typically chosen for their stamina, agility, and olfactory sensitivity. However, what is not taken into account often is the size of the animal and the expense of maintaining and training the animal. Cadaver dogs are typically large breeds that cannot fit in …

Relationships Between Horizontal And Vertical Movements Of Shortfin Mako Sharks (Isurus Oxyrinchus) In The Western North Atlantic Ocean, Katie Gheysen

Senior Honors Projects

Highly mobile pelagic predators, such as tuna, swordfish, and sharks, often undergo changes in depth over a 24-h period and exhibit diel vertical migration (DVM), presumably to maximize foraging efficiency. Studies on the diving behavior of shortfin mako sharks (Isurus oxyrinchus) have been inconclusive as to whether this species consistently exhibits DVM. We investigated relationships between horizontal and vertical movements in shortfin mako sharks by using location and depth data collected from SPLASH tags and pop-up satellite archival tags (PSAT). A state-space model was applied to location data derived from SPLASH tags to generate continuous tracks and to …

Trace Dna Detection Using Diamond Dye: A Recovery Technique To Yield More Dna, Leah Davis

Master's Theses

This study aspires to find a new screening approach to trace DNA recovery techniques to yield a higher quantity of trace DNA from larger items of evidence. It takes the path of visualizing trace DNA on items of evidence with potential DNA so analysts can swab a more localized area rather than attempting to recover trace DNA through the general swabbing technique currently used for trace DNA recovery. The first and second parts consisted of observing trace DNA interaction with Diamond Dye on porous and non-porous surfaces.

The third part involved applying the Diamond Dye solution by spraying it onto …

Determination Of Cadmium Uptake In Crassostrea Virginica Shell Under Controlled Conditions, Joseph John Pavelites Ii

Graduate Theses and Dissertations (2019 - present)

The objective of this thesis was to meet growing demand for the development of environmental biomonitors that protect ecosystems and public health. To do this, I determined the potential of oyster shell as a bioindicator of cadmium (Cd) in the environment by determining the mode of Cd uptake and relationships between Cd concentrations in the environment, shell, and soft tissues of juvenile eastern oysters (Crassostrea virginica Gmelin). I performed a review of the literature on the ability of oyster shell to retain metal contaminants and the factors that could affect this process (Chapter 2). I then reared C. virginica …

Exploring Host-Parasite Interactions In The Euhaplorchis Californiensis-Fundulus Parvipinnis System, Bennett J. Perry

All HCAS Student Capstones, Theses, and Dissertations

Parasites with complex life-cycles may alter their intermediate host’s phenotype to increase the chance of successful transmission to their next host. This parasite-induced host modification often occurs in the form of behavioral changes, such as increased frequency of irregular locomotor behaviors (e.g., conspicuous behaviors), particularly in systems where the parasite is transmitted trophically through a predation event. However, most empirical evidence of host behavioral modification by parasites comes from a few model host-parasite systems and are frequently studied following a stressor (e.g., simulated predator attack). One host species studied is the California killifish Fundulus parvipinnis, which is infected by …

Assessing The Dynamics Of The Southeast Florida Shark Community From 2013-2019 Via Catch Per Unit Effort And Stable Isotope Analysis, Alexandra Barth

All HCAS Student Capstones, Theses, and Dissertations

Sharks, as well as other top predators, are in drastic decline worldwide. As apex and near-apex predators, species such as nurse, lemon, and tiger sharks maintain balanced marine ecosystems by enacting top-down trophic control. However, this cascading effect is diminished with exploitation via commercial and recreational fishing. Sharks are generally long-lived, mature late, have long reproductive cycles, and produce few offspring. Much remains to be learned about the community structure, population trends and conservation statuses of shark populations worldwide. Comprehensive studies on the composition of the shark community in Southeast Florida north of Miami have been limited. This study assessed …

Anomalies In The Mitochondrial Genomes Of Members Of Aliciidae, Boloceroididae, And Gonactiniidae (Actiniaria:Metridioidea), Isabel Pen

2023 Midwest Ecology & Evolution Conference

Analysis of gene sequences from three mitochondrial and two nuclear genes for a broad sampling of actiniarian taxa proposed a novel grouping of the families Aliciidae, Boloceroididae, and Gonactiniidae. (Rodríguez et al., 2014). Although previously unlinked, the association of these taxa was credible given the consistency of the genetic data and the shared occurrence of anatomical traits, including complex column structures (Aliciidae and Boloceroididae), tentacular sphincters (Boloceroididae and Gonactiniidae), and retention of juvenile musculature in adults (Boloceroididae and Gonactiniidae). Although the mitochondrial genome structure of actiniarians is generally conserved, complete mitochondrial genomes identify unusual gene orders (Alicia sansibarensis: …

Genomic Basis Of Antifreeze Trait Divergence In Antarctic And Patagonian Toothfish, Shriram Bhat

2023 Midwest Ecology & Evolution Conference

The Dissostichus genus of notothenioid fish contains two giant, iconic sister species, Dissostichus mawsoni (Antarctic toothfish) and Dissostichus eleginoides (Patagonian toothfish), which inhabit thermally distinct environments. D. mawsoni is protected by antifreeze glycoproteins (AFGPs) from freezing in the cold waters of the Southern Ocean, while D. eleginoides lacks detectable antifreeze activity despite its recent divergence. Interestingly, recent evidence suggests the possibility of a third species in the Dissostichus genus, which is currently believed to be a separate population of D. eleginoides closer to the Southern Ocean whose genome has recently been published. Our study focuses on D. eleginoides specimens from …

Preliminary Report On Fossil Marine Vertebrates From The Mid-Pfeifer Shale (Upper Cretaceous) From Central Kansas, Alison G. Mieczkowski

2023 Midwest Ecology & Evolution Conference

The Pfeifer Shale is a 93-million-years-old rock unit belonging to the Upper Cretaceous Greenhorn Limestone broadly distributed in central Kansas, where it formed in the Western Interior Seaway, a Late Cretaceous epicontinental seaway in North America. Here, we describe fossil marine vertebrates collected from the middle portion of the Pfeifer Shale at a locality in Russell County, Kansas. Surface-collected specimens are largely represented by teeth of some extinct sharks, such as Ptychodus, Cretoxyrhina, and Squalicorax, that are typical for rock units of the Western Interior Seaway immediately above and below the Pfeifer Shale. Examination of microscopic fossils …

A Preliminary Observation Of A New Skeletal Specimen Of A Plethodid Bony Fish (Actinopterygii: Tselfatiiformes) From The Upper Cretaceous Eagle Ford Shale, Texas, Marcelina A. Skowronski

2023 Midwest Ecology & Evolution Conference

Tselfatiiformes was a group of small to medium-sized actinopterygian fishes that lived during the Cretaceous. Recently, a new tselfatiiform specimen consisting of a nearly complete, articulated skull was discovered from the Upper Cretaceous Eagle Ford Shale in Texas. The specimen suggests that the fish was a deep-bodied form and possibly measured about 50 cm in total length. It exhibits pectoral fins high upon the flank, well-developed preopercles, large infraorbital bones, and well-developed branchiostegal rays. These anatomical characteristics suggest its phylogenetic affinity within the tselfatiiform family Plethodidae. The morphology of the paired premaxillae, which are fused together and massive but do …

Using Podcasts To Bring National Estuarine Research Reserves Into The Classroom For Grades 6-12, Kaitlyn M. Dirr

Senior Theses

In a typical classroom setting, there are significant challenges to exposing students to concepts related to earth sciences and the environment. These challenges are exacerbated when conveying lessons about geographic areas with limited access, such as oceans and coastlines (Louv, 2010). It is now more important than ever for environmental education to improve and adapt to our changing world. Educators may have the opportunity to bring these subjects to life by using media content such as podcasts to introduce students to new places and the scientists, managers and educators that work in those spaces. In the United States, there exists …

Movement, Behavior, And Trophic Ecology Of A Pelagic Predator Guild In The Eastern Tropical Pacific Ocean, Ryan Keith Logan

All HCAS Student Capstones, Theses, and Dissertations

Pelagic apex predators exert strong influences on ecological communities, and often support valuable commercial or recreational fisheries worldwide. Yet, due to their rarity and pelagic lifestyle, many species, such as billfishes, have proven particularly difficult to study at resolutions necessary to define dynamics of recovery from fishery interaction, physical interaction with environmental features and prey exploitation, and competitive interactions among other billfish predators. This leads to a paucity of knowledge on billfish ecology and habitat use, and hinders management efforts. With the ever-improving and miniaturization of technology and oceanographic datasets, the ability to define and quantify these interactions of fish …

What Drives Larval Condition For Northern Anchovy (Engraulis Mordax)? Implications For Coastal Pelagic Species Recruitment Fluctuations And Fishery Management Practices, Michelle Robidas

Theses

Discerning the causes of population boom and bust cycles for coastal pelagic species (CPS) has been a major focus of fisheries management research for over a century. Year-class strength is contingent on larval survival and condition, which can be influenced by larval size at age and growth rate. These two factors, in turn, can be affected by maternal investment and environmental variables such as water temperature, salinity, oxygen, and chlorophyll a. We evaluated each of these factors from 127 two to eight week-old Northern Anchovy (Engraulis mordax) larvae off the coast of San Diego to San Francisco, …

Controls Of Physical Drivers On The Formation And Toxicity Of Harmful Cyanobacteria Blooms (Cyanohabs), Courtney N. Hammond

LSU Master's Theses

Estuaries within the Gulf of Mexico are exhibiting profound alterations due to climatic changes and the implementation of coastal restoration activities. These changes are attributed to the increasing frequency of harmful cyanobacteria blooms (cyanoHABs) within Lake Pontchartrain, an estuary located in southeastern Louisiana, USA. There is a better understanding into how the opening of the Bonnet Carré Spillway (BCS) impacts cyanoHAB formations compared to the effect of other physical drivers when the spillway doesn’t dominate the system. The goal of this study is to provide a greater understanding of the baseline conditions when the BCS is closed and determine what …

Rapid Growth In Late Cretaceous Sea Turtles Reveals Life History Strategies Similar To Extant Leatherbacks, Laura E. Wilson

Geosciences Faculty Publications

Modern sea turtle long bone osteohistology has been surprisingly well-studied, as it is used to understand sea turtle growth and the timing of life history events, thus informing conservation decisions. Previous histologic studies reveal two distinct bone growth patterns in extant sea turtle taxa, with Dermochelys (leatherbacks) growing faster than the cheloniids (all other living sea turtles). Dermochelys also has a unique life history compared to other sea turtles (large size, elevated metabolism, broad biogeographic distribution, etc.) that is likely linked to bone growth strategies. Despite the abundance of data on modern sea turtle bone growth, extinct sea turtle osteohistology …

The Effect Of Blue Mussel (Mytilus Edulis) Extinction On Ecosystem Function In The Gulf Of Maine Rocky Intertidal, Sophia K. Montague

Honors Theses

Stressors associated with climate change including thermal stress and ocean acidification inhibit the growth and reproduction of many species, including the ecologically and economically important blue mussel species in the Gulf of Maine (GOM). Established scaling relationships between mussel size, abundance, and water filtration suggests that the decline of mussels will stunt GOM water filtration. This change in the rate of water filtration could have large effects on the abundance of phytoplankton, abundance of invertebrate larvae, abundance of nutrients and organic material, food web stability, and biodiversity. Overall, this thesis explores the effect of blue mussel (Mytilus edulis) …

Assessment Of Living Shorelines For Restoring Fish Habitats: A Case Study From Coastal Alabama, Claire Legaspi, Matheus De Barros, Alexandra Rodriguez, Ronald Baker

Gulf and Caribbean Research

No abstract provided.

A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat

Gulf and Caribbean Research

Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …

Examining The Connectivity Of Antarctic Krill On The West Antarctic Peninsula: Implications For Pygoscelis Penguin Biogeography And Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of these populations may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis penguins that breed along the WAP during the austral summer. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across four austral summers. Specifically, we examined krill connectivity around the Adélie gap, a 400 km long region along …

Biomass And Productivity Of Thalassia Testudinum In Estuaries Of The Florida Panhandle, Laura A. Yarbro, Paul R. Carlson, Ken L. Heck, Dorothy Byron, Sandra Brooke, Linda Fitzhugh, Sheila Scolaro, Barbara Albrecht, Rachel Presley, Jane M. Caffrey

Gulf and Caribbean Research

Thalassia testudinum often dominates seagrass meadows of the Florida panhandle but few measurements of productivity, biomass, density, turnover or leaf area index in this region have been made. We targeted 5 estuaries located at similar latitudes, 30⁰ ± 0.3⁰N: Big Lagoon, Santa Rosa Sound, St. Andrew Bay, St. Joseph Bay, and St. George Sound. This study was one component of a collaborative partnership of state and local researchers examining factors preventing recovery in panhandle estuarine areas that had historically contained seagrass in the 1940s and 1950s. Measurements were made twice in 2016, once in June and then again in summer …

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Biological Sciences Faculty Publications

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40–75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ¹³C and δ¹⁵N) of host and symbiont tissues …

Sea-Ice Conditions Predict Polar Bear Land Use Around Military Installations In Alaska, Eric V. Regehr, Kristin L. Laidre, Todd C. Atwood, Harry L. Stern, Benjamin Cohen

Human–Wildlife Interactions

Polar bears (Ursus maritimus) are threatened by sea-ice loss due to climate change, which is concurrently opening the Arctic to natural resource extraction and a broader scope of national security responsibilities. Mitigating the risk of human–bear conflicts is an emerging challenge as many polar bears spend longer ice-free summers on land where they have limited access to food and come into more frequent contact with people. We investigated a suite of physical and ecological variables that influence the timing of polar bear arrival on, and departure from, land using remote-sensing data on sea-ice extent and satellite telemetry data …

Effects Of Oyster Aquaculture On Elasmobranch Abundance And Habitat Use In Humboldt Bay, Ca, Rose Harman

Cal Poly Humboldt theses and projects

Habitat modification from aquaculture can have large effects on natural communities, with the habitat complexity provided by aquaculture structure positively influencing benthic invertebrates and small fish abundance. However, the effects of aquaculture on larger predatory fish like elasmobranchs (i.e., sharks and rays), which use nearshore habitat to forage and provide top-down control of these ecosystems, is largely unknown. Over two years, I deployed baited remote underwater video systems (BRUVS) to examine the effects of oyster aquaculture and environmental variables such as habitat (mudflat or eelgrass), salinity (ppt), turbidity (m), temperature (°C), pH (mV), dissolved oxygen (mg · L^-1), …

Conceptualizing The Construct Of Ocean Identity, Miriah R. Kelly, Jo-Marie Kasinak, Emma Mckinley, Caitlin Mclaughlin, Jamie M.P. Vaudrey, Jennifer Mattei

Biology Faculty Publications

The construct of ocean identity provides a valuable lens that can unpack the multiple dimensions of human connections with ocean spaces, and crucially places importance on the integration of cognitive, affective, and behavioral components. The construct of ocean identity is applicable in academic and professional contexts, and is largely unexplored from both qualitative and quantitative research perspectives. This comment article presents a revised definition of ocean identity and posits a useful conceptual framework based on a robust analysis of literature to unveil the multiple dimensions that may explain an individuals’ ocean identity. Here we identify a series of attributes that …

Host-Microbe Interactions In Non-Native Estuarine Anemones: Biogeography And Temperature, Parker K. Lund

Cal Poly Humboldt theses and projects

Non-native species are increasing in prevalence around the world, resulting in negative economic and ecological impacts. However, the broad distributions of non-native species also offer a system for investigating the response of host-associated microbial communities to environmental factors across a range of ecological scales. At the broadest scale, I investigated the geography of microbial communities in the non-native estuarine anemone Diadumene lineata on the west coast of the United States of America. Across latitudes, microbial community composition was very similar and displayed a high percentage of Klebsiella spp. at all sites. However, the communities in California tended to exhibit higher …

Effects Of Ph, Eelgrass, And Settlement Substrate On The Growth Of Juvenile Magallana (Crassostrea) Gigas, A Commercially Important Oyster Species, Johnny S. Roche

Cal Poly Humboldt theses and projects

Worsening ocean acidification (OA), resulting from ongoing absorption of atmospheric carbon dioxide (CO₂) by the oceans, threatens marine life globally. Calcifying organisms, especially their early life stages, are particularly vulnerable; this includes the economically important Pacific oyster, Magallana (Crassostrea) gigas. Uptake of dissolved CO₂ through photosynthesis by seagrasses, like eelgrass (Zostera marina), may benefit calcifying organisms by increasing pH and carbonate availability. I conducted laboratory and field experiments to quantify carbonate chemistry modification by eelgrass and potential mitigation of OA impacts on growth in juvenile Pacific oysters. In the laboratory experiment, daytime …

Investigating Salinity Intrusion Effects On Sapelo Island, Georgia Using Benthic Macroinvertebrate Bioindicators, Raymond Paul Kidder Ii

College of Graduate Studies: Theses & Dissertations

Coastal wetlands are threatened by the compounding effects of sea level rise and historical land modification. Historically, much of Sapelo Island, Georgia was deforested and drained using a series of ditches and canals to create arable land fit for agriculture and to provide drainage to the inhabited parts of the island. Today, this network of artificial channels is believed to be facilitating the movement of saltwater from the nearby estuary into freshwater areas on the interior of the island. This study aimed to better understand the frequency and magnitude of salinity intrusion events along with their resulting impacts to the …

An Introduction To The Special Issue: Island Invaders, Aaron B. Shiels, Shane R. Siers, S. Nicole Frey

Human–Wildlife Interactions

This is the introductory letter from the associate editors of the special issue on Island Invaders.

Eavesdropping On Animals: Can Bioacoustics Help Save Species?, Zoe Grueskin

Capstones

Around the world, scientists are using sound to study the natural world in a growing field called bioacoustics. Researchers are eavesdropping on frogs and fish, elephants and earthworms, and many hope what they hear can inform and inspire conservation action around the world. From the field’s auspicious beginning with accidentally-recorded whales, to researchers today listening to locations as diverse as the Arctic seafloor and India’s Western Ghats mountain range, this capstone project explores the potential — and limitations — of conservation bioacoustics. Read the story, see photos and listen to audio pieces featuring three bioacousticians and their field recordings here: …

Microplastic Accumulation In The Digestive Tract Of Young-Of-Year Atlantic Sharpnose Sharks (Rhizoprionodon Terraenovae) In The Grand Strand, Sc, Andrew Curtis Sitlinger

Electronic Theses and Dissertations

This study focused on the presence and accumulation of microplastic fibers in the digestive tract and livers of young-of-year Atlantic Sharpnose Sharks (Rhizopriondon terraenovae) from two sampling locations along the Grand Strand of South Carolina. R. terraenovae is a small, mesopredatory elasmobranch found abundantly along northwestern Atlantic Ocean coastlines. Thirty specimens of R. terraenovae were collected from May through August of 2020. Microplastics were found in all specimens. A total of 672 plastic particles were identified over the course of the study, with an average of 22.4 ± 10.5 (SD) plastics per specimen. The majority of the plastics were classified …