Ecology and Evolutionary Biology Commons^™

Population Genomics, Ecology And Conservation Of Asterias Sea Stars In The North Atlantic, Melenia I. Giakoumis

Dissertations, Theses, and Capstone Projects

Uncovering how species respond to environmental change is a central question in biology (Ehrlén & Morris 2015; Habibullah et al. 2022). It is the key to elucidating the past, understanding the present and predicting the future of species’ population dynamics. This dissertation investigates the influence of environmental change on intertidal species’ distributions and genomics at several timescales, with implications for conservation.

Environmental changes have occurred throughout history, on a geological scale, and have shaped the global patterns of species’ distributions and population sizes. Biologists have long studied how geological history has shaped species distributions (Sanmartín 2012) in both terrestrial (Liu …

Remote Sensing Characterization Of Ecosystem Structure And Functional Types To Inform On Biodiversity Conservation In The Lowland Chocó Rainforest, Derek Tesser

Dissertations, Theses, and Capstone Projects

This dissertation focuses on the utilization of remote sensing techniques to characterize ecosystem structure and functional types to inform on biodiversity conservation. This work is motivated by a guiding hypothesis that increased degradation of tropical forest biodiversity due to human activity results in in measurable changes in ecosystem processes that can be detected using remote sensing technologies. Throughout this dissertation, testing of aspects of this hypothesis involve comparing areas with varying degrees of human-induced degradation in a biodiverse tropical ecoregion, the lowland Chocó rainforest of Ecuador. Remote sensing data is used to evaluate changes in vegetation structure, thermal regimes, and …

Go Big Or Go Home: Divergence In Morphology And Behavior Between Island And Islet Populations Of The San Cristóbal Lava Lizard (Microlophus Bivittatus), Emilio J. Mancero

Masters Theses

Rapid divergence in body size is a well-documented phenomenon among island species, associated with macroevolutionary processes of diversification and adaptive radiation. The effect of insularity in determining larger body size as an optimal phenotype is primarily attributed to lower predation and greater intraspecific competition on islands. Our study examined interpopulation variation in morphology, social behavior and predator avoidance in Galápagos lava lizards endemic to San Cristóbal island (Microlophus bivittatus), and the nearby islet Isla Lobos. Islet populations have fewer competitors than those on the island, where native and introduced predators are abundant. We simulated interactions with predators and …

Euscorpius Sulfur Sp. N. (Scorpiones: Euscorpiidae), A New Cave Scorpion From Albania And Northwestern Greece, František Kovařík, Marek Audy, Serban M. Sarbu, Victor Fet

Euscorpius

A new species of cave scorpion, Euscorpius sulfur sp. n. (Scorpiones: Euscorpiidae) from Albania and northwestern Greece is described, fully complemented with color photographs of both live and preserved specimens, as well as their habitats.

Assessing The Effects Of Live Oysters And Sampling Gear On Biodiversity Metrics Of Reef-Associated Benthic And Nekton Assemblages, Finella Campanino

LSU Master's Theses

Oysters are declining globally, resulting in an increase in oyster reef restoration, with many efforts prioritizing maintenance of reef-associated biodiversity. Understanding the role that reef-specific characteristics play in supporting biodiversity and how sampling gear influences measurements of biodiversity can inform design and management of restoration projects. I examined the relationship between live oyster volume and reef-associated benthic and nekton assemblages (hereafter reef assemblages) and how sampling gears influence our understanding of biodiversity on intertidal Crassostrea virginica reefs near Cocodrie, Louisiana. I quantified substrate characteristics, assemblages via trays, and water-column characteristics across four reefs and four seasons in 2022-2023, and compared …

Behavioral Response To Conspecific Sounds In Loricariid Catfishes (Pterygoplichtys Pardalis And Otocinclus Vittatus), Hephzibah Obafunmiso

Masters Theses & Specialist Projects

Sound production is a means of communication among many fish species. In fishes, sound is produced through various mechanisms, but in the family Loricariidae, known as armored suckermouth catfishes, sound is produced primarily through pectoral fin spine stridulation. Previous experiments have described the sounds produced and shown the mechanism of sound production in two species of loricariid catfishes, Pterygoplichthys gibbiceps and Otocinclus affinis, but the functional significance of loricariid sounds is still unknown. To address this question, I examined the behavioral responses of Pterygoplichthys pardalis and Otocinclus vittatus to conspecific calls. Individual fish (N=10 for P. pardalis) or groups …

Mammalian & Avian Community Response To African Elephant (Loxodonta Africana) Habitat Modification In Southeastern Kenya, Dakota Vaccaro

Masters Theses & Specialist Projects

African elephants (Loxodonta africana) play a significant role in the modification of their habitat, foremost by decreasing woody vegetation cover and density and in some parts of Africa high elephant densities damage small sanctuaries and preserves. For wildlife that depend on forested patches, this increased modification could lead to displacement and/or decreases in abundance. If suitable habitat is not available elsewhere, elephants and other wildlife may move closer to humans in search of resources, which can result in increased human-wildlife conflict. Evaluating this impact was one of the goals of the Elephants and Sustainable Agriculture in Kenya (ESAK) …

Western Pearlshell (Margaritifera Falcata) Extirpation In The Smith River, Montana, With A Possible Link To Warming Water Temperatures, David M. Stagliano

Western North American Naturalist

Western pearlshell (Margaritifera falcata) populations are in decline across the species’ range in western North America. In 2008, Montana categorized the western pearlshell as an imperiled species of concern (S2) based on reduced detections at historically occupied sites and few viable populations. Between 2004 and 2014, we surveyed 24 Smith River reaches (61 total sites in the watershed) for the presence of western pearlshell populations. Despite historical and anecdotal descriptions of abundant western pearlshell in the Smith River, intensive structured surveys between 2004 and 2007 documented only 4 sections with low-density, nonviable western pearlshell populations (<10 individuals, large size classes [average total length = 70 mm], with no signs of recruitment). In 2014, we revisited these occupied sites to repeat surveys (expending significantly more search time) and observed no live individuals. This was surprising given that, although those populations would certainly die out without recruitment, older individuals can oftentimes persist for decades. Therefore, we consider the western pearlshell mussel extirpated from the Smith River watershed. We reviewed long-term USGS gage discharge and temperature data near the western pearlshell populations to evaluate the potential causal factors for, and timing of, the extirpation. From 3 July to 3 August 2007, water temperatures were at or above the thermal stress levels of the western pearlshell (>25 °C, …

An Ecological Survey Of East Texas Salamanders Across The Camp Tyler Outdoor Field School In Smith County, Texas, Justin C. Hunt

Biology Theses

Amphibians are a unique class of organisms with a very long and storied evolutionary history of survival. Many modern amphibian clades occupy several vital ecological roles within their native freshwater environments. One of these roles, typically includes functioning as an ecological indicator species, whereby the presence of stable and diverse populations of many amphibian species, including salamanders, within a freshwater ecosystem have long been considered ecological indicators of good habitat quality and stable ecosystem health. Similarly, salamanders also function as important members of their local food webs and act as valuable mediators of complex trophic hierarchies to facilitate nutrient cycling …

Monitoring The Effects Of Poultry Waste On Fishes And Macroinvertebrates In The Sabine River, Karley R. Parker

Biology Theses

Freshwater is a vital resource that provides life and sustainability for almost all organisms on Earth. It is important to maintain its health and protect it from emerging pollutants that pose a threat to the organisms that use it. Pollution continues to threaten the well-being of the environment’s freshwater sources all around the world that could lead to damaging effects in the future. The Sabine River is a major freshwater resource in the east Texas and western Louisiana areas that provides a habitat for thousands of organisms as well as other domestic uses for humans. In 2019, a waste discharge …

Commercial Fishing Identification Guide 2023, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Throughout this guide you will see all or some of the marine bioregion symbols with each fish illustration, indicating where the species is most likely to occur.

This guide has been developed to help you identify the more common species in Western Australia you may encounter. The purpose of this guide is to enhance consistent and accurate species identification.

If you are unsure about a particular species (or if it is not in this guide), please discuss it with a representative of the Department of Primary Industries and Regional Development, Western Australia.

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

2023 Coordinated Spring Survey Of Mid-Continent Sandhill Cranes, Terry Liddick

United States Fish and Wildlife Service: Publications

The aerial transect portion of the coordinated spring survey of mid-continent Sandhill cranes was conducted on March 22, 2023 in Nebraska’s Central Platte and North Platte River valleys (United States). The 2023 photo-corrected aerial estimate is 1,259,000 birds. Outside the traditional aerial transect portion, observers conducted ground surveys during the period March 20–22. From these regions, observers in the Official Survey Area (OSA) of Nebraska, Kansas, Texas, Oklahoma, and Wyoming reported an additional 25,363 cranes. The 2023 total estimate (1,284,500) increased 43.1% from 2022. The current three-year average (2021–2023 with no photo correction in 2021), based on photo corrected estimates …

Two New Species Of The Remarkable Scorpion Genus Megacormus Karsch, 1881 (Scorpiones: Euscorpiidae), Rolando Teruel, František Kovařík, Graeme Lowe, František Šťáhlavský

Euscorpius

Two new species of the very interesting euscorpiid scorpion genus Megacormus Karsch, 1881, are herein described from eastern Mexico. Both had been previously misidentified in the published literature, one as Megacormus segmentatus Pocock, 1900, the other as Megacormus granosus (Gervais, 1844), but the direct comparison of adults of both sexes to adult topotypes from all members of the genus currently accepted as valid taxa, revealed solid morphological characters that warrant their recognition as distinct taxa. Both new species seem also to be endemics with a small distribution area, but apparently not restricted to a single locality. This addition raises the …

The Impact Of Road Crossings On Karst Headwater Streams In Northwest Arkansas, Anthony M. Zenga

ATU Theses and Dissertations 2021 - Present

The karst region of NW Arkansas is home to many headwater endemic Species of Greatest Conservation Need (SGCN). This includes many species of darters, such as Etheostoma cragini, E. microperca, and E. mihileze, as well as crayfish such as Faxonious meeki brevis and F. nana. NW Arkansas is rapidly urbanizing, increasing the need to construct structures like culverts, bridges, and fords. These man-made road crossings can cause stream habitat degradation and fragmentation, as well as impair overall stream connectivity. To evaluate the impact that road crossings have on aquatic SGCN species and their habitat, 30 headwater streams were sampled throughout …

Morphological Trait Evolution In Solanum (Solanaceae): Evolutionary Lability Of Key Taxonomic Characters, Rebecca Hilgenhof, Edeline Gagnon, Sandra Knapp, Xavier Aubriot, Eric Tepe, Lynn Bohs, Leandro Giacomin, Yuri Gouvea, Andres Orejuela, Christopher T. Martine, Clara Ines Orozco, Iris E. Peralta, Tina Sarkinen

Faculty Journal Articles

Solanum is one of the world's largest and economically most important plant genera, including 1245 currently accepted species and several major and minor crops (e.g., tomato, potato, brinjal eggplant, scarlet eggplant, Gboma eggplant, lulo, and pepino). Here we provide an overview of the evolution of 25 key morphological traits for the major and minor clades of this giant genus based on stochastic mapping using a well-sampled recently published phylogeny of Solanum. The most evolutionarily labile traits (showing >100 transitions across the genus) relate to plant structure (growth form and sympodial unit structure), herbivore defence (glandular trichomes), pollination (corolla shape …

2023 Summer Newsletter, Plaster Creek Stewards

Newsletters

Highlights:

A Summer of Growth

Plaster Creek Has Mussels

Growing with the Green Team

Come See the Plaster Creek Mural

Lot 16: Calvin's New Bioswale

Welcome, Matt!

Student Research

Summer Reflections

Do Species Matter? Examining The Niche Of White Ash (Fraxinus Americana L.) And Estimating Potential Subcanopy Effects Of Its Loss In North-Temperate Forests, Elizabeth Anne Studer

Dartmouth College Ph.D Dissertations

To understand the downstream consequences of the extinction of a species, we must understand its role in an ecosystem. With the impending extirpation of ash (Fraxinus spp.) due to the invasive emerald ash borer (Agrilus planipennis), understanding the role of ash trees is critical to predicting whether its loss will precipitate further species declines and/or ecosystem functions. We evaluated whether subcanopy microbial, invertebrate, and floral communities under four tree species (white ash, American beech, yellow birch, sugar maple) and on two soil hydropedological types (Bh podzol and Typical podzol) varied in species richness, composition, and functional traits in a factorial …

Sympatric Soil Microbe Interactions Between Streptomyces And Fusarium Isolates, Lehren A. Olk-Szost

All NMU Master's Theses

Interkingdom interactions between soil bacteria and fungi may play a critical role in occurrence of disease suppressive soils, yet our understanding of these interactions remains limited. Streptomyces are well-known producers of antimicrobial compounds important to medicine and agriculture. Production of these secondary metabolites is often mediated by quorum sensing. Most Streptomyces research occurs in single species experiments, yet new metabolites have been discovered in interspecies co-culture experiments. Interspecies, intergenic, and interkingdom co-culture research will likely reveal many valuable compounds, and strengthen our understanding of complex ecological interactions in soil microbiomes. Interactions between sympatric Streptomyces and Fusarium isolates from disease suppressive …

Development Of A 16s Reference Library For Edna Metabarcoding The Freshwater Fishes Of Western Ecuador., Hannah M. Willis, Olivia G. Schweikart, Windsor E. Aguirre

DePaul Discoveries

This project examines the use of the 16S locus to amplify neotropical freshwater fishes native to Western Ecuador in a newly created 16S reference library for DNA barcoding and eDNA metabarcoding applications. Among the orders Characiformes, Siluriformes, Cichliformes, Gobiiformes, Cryprinodontiformes, Gymnotiformes, and Perciformes, a compendium of 105 specimens were sequenced, with 43 representing new 16S sequences previously unavailable on Genbank.

Environmental Monitoring Of Heavy Metals Status In Semiarid Lands Of Northeastern Algeria, Rania Gacem, Hana Souahi, Chemseddine Fehdi, Abderrezzeq Chebout

Journal of Bioresource Management

With the rapid development of industry, heavy metal contamination is becoming among the most important environmental problems causing worldwide concern. The purpose of this study was to evaluate the level of soil heavy metal pollution in the semi-arid areas of Northeast Algeria. To evaluate the ecological state of soils, we investigated fifteen sites. The level of heavy metals (HMs) toxicity and soil characteristics likr pH, electrical conductivity, organic matter, calcium carbonate, calcium, sodium, magnesium, phosphorus, nitrogen, and potassium were assessed during this study. The results showed that the mean values of heavy metals were as follows in ppm: Zn (41.197 …

Molecular And Morphological Confirmation Of Isometrus Maculatus (Degeer, 1778) (Scorpiones: Buthidae) From Northeast India And East Asia, Shubhankar Deshpande, Mihir Joshi, Kazusa Kawai, Arnab Deb, Jeng-Di Lee, Deshabhushan Bastawade, Gaurang Gowande, Shauri Sulakhe

Euscorpius

We present molecular data on Isometrus maculatus (DeGeer, 1778) for the first time from India, Japan, and Taiwan based on the COI gene and justify the cosmopolitan nature of this species. We also address the first population of I. maculatus found in Teliamura, Tripura, India and give its detailed description and comparison with the rest of the Isometrus species from India. Furthermore, we discuss the justification for considering Sri Lanka as the true home of I. maculatus.

А Review Of Heterometrus In Thailand (Scorpiones: Scorpionidae), Kazusa Kawai, Thornthan Unnahachote, Yossaphon Suttisatid, Victoria Tang

Euscorpius

Five species of the genus Heterometrus Ehrenberg, 1828 are currently confirmed from Thailand and revised, with their respective distribution range in this country updated. Heterometrus laevigatus (Thorell, 1876) is considered a nomen dubium, while its two previous junior synonyms, H. cimrmani Kovařík, 2004, stat. rev. and H. minotaurus Plíšková et al., 2016, stat. rev. are revalidated and redescribed based on the examination of topotypes. Females of H. minotaurus Plíšková et. al., 2016, stat. rev. were also collected and examined, and their characters are herein described with a special attention to sexual dimorphism. Furthermore, some populations previously regarded as H. …

The Digitization Of Eatonia, Peter M. Grant

Faculty Articles & Research

The June 2023 issue of The Mayfly Newsletter features this article written by Dr. Peter Grant about the digitization of Eatonia by SWOSU University Archivist and Special Collections Librarian, Phillip Fitzsimmons, and Digitization Technician, Ben Dressler.

First Report Of Regeneration In The Genus Mesobuthus (Scorpiones: Buthidae), Rıdvan Kurt, Ersen A. Yağmur, Gülhanım Çelik

Euscorpius

A new example of scorpion leg regeneration is reported in an adult male Mesobuthus mesopotamicus (Penther, 1912). A claw (pretarsus) was observed to regenerate at the distal end of the tibia of the left leg II. The regeneration case is described and illustrated.

Relative Genetic Homogeneity Within A Phenotypically Diverse Group; A Case Of The Lake Tana Labeobarbus (Cyprinidae) Species Flock, Ethiopia, Kebede Beshera

Faculty Publications

The Lake Tana Labeobarbus species flock represents one of the world’s most famous examples of lacustrine species radiations. Previous studies of this group have resulted in the description of at least 15 species based on their differences in functional morphology and definition of two clades (lacustrine and riverine spawning clades) based on life history traits. A total of 166 fish representing 14 Labeobarbus species were genotyped using 10 lineage-specific hexaploid microsatellite loci. Six of these loci were developed for this study based on DNA sequence contigs derived from a microsatellite-enriched genomic library of Labeobarbus intermedius from Lake Tana; the remaining …

A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine

Faculty Journal Articles

Solanum section Leptostemonum is an ideal lineage to test the theoretical framework regarding proposed evolutionary benefits of outcrossing sexual systems in comparison to cosexuality. Theoretically, non-cosexual taxa should support more genetic diversity within populations, experience less inbreeding, and have less genetic structure due to a restricted ability to self-fertilize. However, many confounding factors present challenges for a confident inference that inherent differences in sexual systems influence observed genetic patterns among populations. This study provides a foundational baseline of the population genetics of several species of different sexual systems with the aim of generating hypotheses of any factor—including sexual system—that influences …

A New Genus And Sixteen New Species Of False Click Beetles (Coleoptera: Eucnemidae) Described From The Heredia Province Of Costa Rica With Several Additional Records From The Osa Peninsula And Panama, Robert L. Otto, Jyrki Muona, Jim Córdoba-Alfaro

Insecta Mundi

More than 1,300 specimens of Eucnemidae collected from Heredia Province in Costa Rica during the 1990s Arthropods of La Selva (ALAS) survey were studied from 2018 through 2022. One new genus of false click beetle, Absensiugum Otto, Muona and Córdoba-Alfaro, is described. Nematodes teres Horn, from the Ne­arctic and Caribbean regions, is transferred to this new genus to form Absensiugum teres, new combination. Sixteen new species of false click beetle (Coleoptera: Eucnemidae) are described from Costa Rica. These new species are: Adelothyreus brevis, Adelothyreus costaricensis, Adelothyreus totus, Quirsfeldia stethonoides, Lacus pectinatus, Maelodrus costaricensis, Onichodon …

A Baseline Assessment Of Migratory And Resident Bird Use Of A Prairie Restoration Site In Eastern Washington, Madilyn J. Odiorne, Brynn A. Richey, Ruby L. Hammond

2023 Symposium

Prairies, and other types of grassland ecosystems, have suffered some of the most profound losses worldwide, due to anthropogenic factors such as fossil fuel extraction, agriculture, and climate change. Likewise, organisms inhabiting grassland ecosystems have become extirpated across much of their historical range, not the least of which has been a 50% decline in grassland birds since the 1960s. In response to losses of intact prairie in eastern Washington, a 120-ac site has been established on the EWU campus to regenerate native prairie and monitor changes in the ecosystem as native plants recolonize and replace non-natives. Because birds are an …

Androctonus Kunti Sp. N. From Iğdır Province, Turkey (Scorpiones: Buthidae), Ersen A. Yağmur

Euscorpius

A new species Androctonus kunti sp. n. is described and illustrated from Iğdır Province of Turkey. This population was first recorded by Birula (1896) as A. crassicauda (Olivier, 1807). A. kunti sp. n. is compared with A. crassicauda as well as A. turkiyensis Yağmur, 2021, which was recently described from Turkey