Ecology and Evolutionary Biology Commons^™

The Loss Of Species: Mangrove Extinction Risk And Geographic Areas Of Global Concern, Beth A. Polidoro, Kent E. Carpenter, Lorna Collins, Norman C. Duke, Aaron M. Ellison, Joanna C. Ellison, Elizabeth J. Farnsworth, Edwino S. Fernando, Kandasamy Kathiresan, Nico E. Koedam, Suzanne R. Livingstone, Toyohiko Miyagi, Gregg E. Moore, Vien Ngoc Nam, Jin Eong Ong, Jurgenne H. Primavera, Serverino G. Salmo, Jonnell C. Sanciango, Sukristijono Sukardjo, Yamin Wang, Jean Wan Hong Yong

Biological Sciences Faculty Publications

Mangrove species are uniquely adapted to tropical and subtropical coasts, and although relatively low in number of species, mangrove forests provide at least US $1.6 billion each year in ecosystem services and support coastal livelihoods worldwide. Globally, mangrove areas are declining rapidly as they are cleared for coastal development and aquaculture and logged for timber and fuel production. Little is known about the effects of mangrove area loss on individual mangrove species and local or regional populations. To address this gap, species-specific information on global distribution, population status, life history traits, and major threats were compiled for each of the …

Fishing Industry Impact Study : James Price Point Proposed Liquefied Natural Gas Precinct, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Fisheries Occasional Paper No. 77 - Economic Analysis: Fishing Industry Impact Study - Kimberley Lng Project, Econsearch Pty Ltd, Department Of Fisheries Western Australia

Fisheries Occasional Publications

This study, prepared as a part of a broader study for WA fisheries, is concerned with the regional economy of the West Kimberley region and involves an assessment of the impact on the region of a range of fishing industry scenarios associated with development of an LNG processing facility. Specific tasks involved in the study were to prepare the following:

• a standard input-output model for the West Kimberley regional economy for 2007/08 and extend it as a DECON model; and

• estimates of the regional economic and population impact for a range of fishing industry scenarios arising from the …

The Natural History & Distribution Of Riverine Turtles In West Virginia, Linh Diem Phu

Theses, Dissertations and Capstones

Turtles are unique evolutionary marvels that evolved from amphibians and developed their protective shelled form more than 200 million years ago. In West Virginia, there are 10 native species of turtles, 9 of which are aquatic. Most of these aquatic turtles feed on carrion and dead plant matter, in the water and essentially "clean" our water systems. Turtles are long-lived animals with sensitive life stages that can serve as both long-term and short-term bioindicators of environmental health. With the increase in commercial trade, habitat fragmentation, degradation, destruction, there has been a marked decline in turtle species. The need for well …

Testing The Behavioral Responses Of West Virginia Turtles To Roads And Vehicles, Aaron Clinton Gooley

Theses, Dissertations and Capstones

Road mortality has been identified as a major threat to many turtle species; however, response to passing vehicles, crossing speed, and general behavior while crossing roads has never been investigated in turtles. To investigate these factors, Midland Painted Turtles (Chrysemys picta marginata), Eastern Box Turtles (Terrapene c. carolina), and Stinkpots (Sternotherus odoratus) were collected and placed in a release box on the side of a closed road with an active road running parallel to it 26 m away. Turtles were released via a pulley-operated door facing the road, and their actions videotaped by an …

Long-Term Growth And Monitoring Of The Eastern Hellbender (Cryptobranchus A. Alleganiensis) In Eastern West Virginia, Douglas Charles Horchler

Theses, Dissertations and Capstones

Amphibian declines have been well documented, specifically in the last few decades. The Hellbender, Cryptobranchus alleganiensis, one of North America’s largest salamander species, has suffered dramatic declines throughout much of its range, with estimated declines of up to 77 percent recently documented in some populations. With diurnal and nocturnal searches and mark-recapture techniques, I collected data on the status of Eastern Hellbender populations in Eastern West Virginia. We re-sampled a study site on the West Fork of the Greenbrier River that was first examined in 1998 by Jeff Humphries. Long-term growth and survivorship data were collected and compared to 1998 …

A Natural History Study Of Bufo A. Americanus, The Eastern American Toad, And The Phenology Of Spring Breeders In Southwest West Virginia, Tomi Maria Bergstrom

Theses, Dissertations and Capstones

Natural history traits have not been thoroughly collected and analyzed on the "common hoptoad," Bufo a. americanus (eastern American toad) in West Virginia. Updating natural history information is important to understand the present population status (Jackson, 2001). I chose to have two study sites at opposing physiographic regions to constitute a better understanding of B. a. americanus natural history in WV. The study was initiated in spring 2008 at Beech Fork State Park and Green Bottom Swamp Wildlife Refuge (in Mason and Cabell counties) and in 2009 incorporated Canaan Valley of Tucker County. Ten natural history morphometrics and characters were …

Environmental And Endogenous Factors Influencing Emigration In Juvenile Anadromous Alewives, Benjamin I. Gahagan, Eric T. Schultz, Katie E. Gherard

EEB Articles

We analyzed juvenile anadromous alewife migration at Bride Lake, a coastal lake in Connecticut, during summer 2006 and found that migration on 24-hour and seasonal timescales was influenced by conditions of the environment and characteristics of the individual. To identify environmental cues of juvenile migration, we continuously video recorded fish at the lake outflow and employed information-theoretic model selection to identify the best predictors of daily migration rate. More than 80% of the approximately 320,000 juveniles that migrated from mid-June to mid-August departed in three pulses lasting one or two days. Pulses of migration were associated with precipitation events, transient …

Biofouling And Short-Term Dynamics On Fish Cage Netting In Relation To Fish Rearing And Environmental Factors., John Madin

Student Works (2010-2019)

Four studies were conducted in a floating net-cages farm at Matang Mangrove Forest Reserve (MMFR), Perak, Malaysia, to elucidate the biofouling assemblages on cage nettings and factors that influence their development. In the first study (Chapter 3),biofouling on 1.6 cm mesh net panels (size 0.2 m x 2 m) suspended inside (homemade pellet ‘P’, trash fish ‘T’) and outside (O) experimental net-cages in a fish farm were monitored every week until net openings were completely occluded by macrofouling organisms. Eight species (7 phyla) of sessile organisms and 27 species (3 phyla) of nonsessile associates were recorded.Colonization by macrofouling organisms usually …

Diel Fish Habitat Selection In A Tributary Stream, Andria K. Salas, Eric B. Snyder

Peer Reviewed Publications

This study investigated the location and diel habitat preferences (at 100 m reach scale) of fish in a small tributary stream in late spring, early summer. During the day, coho (Oncorhynchus kisutch) preferred areas with more cover (deeper, greater extent of undercut banks) vs. night when LWD was preferred (Pearson correlation and step-wise MLR). Chinook (O. tshawytscha) exhibited an opposite pattern, preferring LWD during the day vs. higher velocity at night. This suggests these two potadromous species may be partitioning resources. Pooling coho, chinook and rainbow trout (O. mykiss) indicated reaches with more LWD …

Retention, Movement, And The Biotic Response To Large Woody Debris In The Channelized Missouri River, Michael W. Archer

School of Natural Resources: Dissertations, Theses, and Student Research

Large woody debris (LWD) is an important component of a healthy aquatic ecosystem. However, little is known about the dynamics of LWD in a large, channelized river such as the Missouri River. My objectives were to first, assess the abundance of LWD found along the channelized portion of the Missouri River. Second, I documented movement of LWD that entered the river. Lastly, using PRIMER software I analyzed what effect, if any, river segments, bend types, and LWD had on the community composition of the macroinvertebrate and fish that inhabit the river. Abundance of LWD was greater along bends that have …

Dopamine Modulates The Lateral Giant Neuron And Serotonergic Facilitation In Crayfish, Joshua Scott Titlow

Theses, Dissertations and Capstones

The lateral giant (LG) neural circuit is a model system used to study the function of individual neurons. The LG circuit is part of a tail flip escape reflex that is a defensive behavior for crayfish. This thesis begins by addressing the effects of dopamine (DA), a neurotransmitter involved in normal and abnormal behaviors of most animals. Here it is shown that dopamine decreases the excitability of the LG neuron, a trigger for the escape reflex. An electrophysiology protocol was used to mimic sensory input to the LG neuron. Stimulating a sensory nerve in the last ganglion with an electrode …

Seasonal Variability In Ichthyoplankton Abundance And Assemblage Composition In The Northern Gulf Of Mexico Off Alabama, Frank J. Hernandez, Jr, Sean P. Powers, William M. Graham

University Faculty and Staff Publications

Multiyear ichthyoplankton surveys used to monitor larval fish seasonality, abundance, and assemblage structure can provide early indicators of regional ecosystem changes. Numerous ichthyoplankton surveys have been conducted in the northern Gulf of Mexico, but few have had high levels of temporal resolution and sample replication. In this study, ichthyoplankton samples were collected monthly (October 2004–October 2006) at a single station off the coast of Alabama as part of a long-term biological survey. Four seasonal periods were identified from observed and historic water temperatures, including a relatively long (June–October) “summer” period (water temperature >26°C). Fish egg abundance, total larval abundance, and …

Fisheries Occasional Publication No 75 - Research And Development Plan 2009-10, Department Of Fisheries Western Australia

Fisheries Occasional Publications

The Department of Fisheries R&D plan for 2009/10 outlines the research, monitoring and assessment activities that are specifically directed towards supporting the collection of information that will assist in achieving the objectives of the Fish Resources Management Act (1994) for the coming five year period. This series is updated on an annual basis and should be read in conjunction with the most recent State of Fisheries report where comprehensive analyses of the current status of each of the fisheries and fish habitat resources are described.

The plan specifically focuses on those activities that are currently planned or identified which directly …

Fisheries Management Paper No.245 - Aquaculture Of Coral, Live Rocks And Associated Products. Aquaculture Policy, Department Of Fisheries, Western Australia

Fisheries Management Papers

Aquarium enthusiasts use corals, live rock and associated products (e.g. live sand) for display and to maintain healthy water quality conditions in their marine aquariums. There is a large and growing market for these products. While the wild harvest fisheries for aquarium products in Western Australia are sustainably managed, output is capped, so increased product is needed to meet the market demand. With a trend towards the capping of wild harvest and additional pressures, such as the introduction of Marine Parks and other marine protected areas, the aquaculture of these products is set for industry development and expansion.

The large …

Temporal Shifts In Demography And Life History Of An Anadromous Alewife Population In Connecticut, Justin P. Davis, Eric T. Schultz

EEB Articles

Populations of anadromous alewives (Alosa pseudoharengus) are declining throughout much of their range, particularly in southern New England where fishery moratoriums have recently been instituted in three states. The alewife run at Bride Brook, a coastal stream in East Lyme, Connecticut, was studied from 2003-06 to assess shifts in demography and life history. Annual censuses of abundance, along with sampling for size, age, and spawning history structure were conducted. These data were compared to similar data in 1966-67 at this site. Recent alewife runs at Bride Brook featured lower abundance and younger, smaller fish that were less likely to be …

Fisheries Occasional Publication No. 66 - Scientific Review Of The West Coast Demersal Scalefish Fishery, Western Australia, Michael O'Neill, Department Of Fisheries Western Australia

Fisheries Occasional Publications

In December 2008 the Hon Norman Moore MLC, Minister for Fisheries Western Australia appointed two independent experts to assess separately 1) the validity of scientific advice to management and 2) options to manage recreational fishing of west coast demersal scalefish. The following review (1) assesses the validity of research outlining the status of baldchin groper (Choerodon rubescens), West Australian dhufish (Glaucosoma hebraicum) and snapper (Pagrus auratus) as described in the terms of reference. In addition to the terms of reference, an opinion was requested regarding the current appropriateness of the research advice (Wise et al 2007) and the resulting management …

Fisheries Occasional Publication No. 63 - Western Rock Lobster Ecological Risk Assessment, Department Of Fisheries, Western Australia, International Risk Consultants Group Of Companies

Fisheries Occasional Publications

This Ecological Risk Assessment, conducted by IRC Environment (part of International Risk Consultants) and Department of Fisheries WA (FWA) was the result of an initiative by the WA Fishing Industry Council (WAFIC) and (FWA). This report is based on a risk assessment workshop undertaken in February 2001 at the FWA Marine Research Laboratories in Waterman but includes additional background material to justify some of the rankings of the workshop.

The broad intent of the workshop was to provide a register of the potential main ecological risks that arise from the various activities carried out by the western rock lobster (WRL) …

Fisheries Research Contract Report No. 20 - Risk Assessment Of The Record Brook Inter-Basin Water Transfer Scheme To The Aquatic Fauna Of The Donnelly And Warren Rivers, M. De Graaf, D. L. Morgan, S. J. Beatty, C. W. Hugh

Fisheries Research Contract Reports

Report to the Water Corporation of Western Australia

This report describes the fishes and freshwater crayfishes of the Donnelly and Warren River catchments and provides a risk assessment to these fauna of the proposed extraction of water from Record Brook (tributary of the Donnelly River) and subsequent transfer to Scabby Gully Dam (Warren River catchment). The proposed location of the structure in Record Brook is at the gauging station ~1 km upstream from the confluence with the Donnelly River. The project aims to divert peak flows in the winter and spring flow period, transferring around 500 ML each year. The …

Fisheries Occasional Publication No.057 - Introduced Marine Species In Western Australia, Department Of Fisheries Western Australia

Fisheries Occasional Publications

As the largest State in Australia, Western Australia (WA) has a long and relatively pristine coastline that stretches over 12,500 km, or over 20,700 km if the State’s 3,747 islands are included. The coast ranges over 20 degrees of latitude from the temperate south coast to the northern tip of the tropical Kimberley. There are a wide variety of coastal marine habitats in this vast area. The south coast has extensive white sandy beaches interspersed with granite headlands. A diverse range of nearly 800 species of temperate marine algae, or seaweeds, occurs in the area. With 26 species, the seagrasses …

Effects Of The Pathogenic Water Mold Saprolegnia Ferax On Survival Of Amphibian Larvae, John M. Romansic, Kristin A. Diez, Elise M. Higashi, James E. Johnson, Andrew R. Blaustein

All Faculty Scholarship for the College of the Sciences

Infectious diseases are a significant threat to worldwide biodiversity. Amphibian declines, a significant part of current biodiversity losses, are in many cases associated with infectious disease. Water molds are one group of pathogens affecting amphibians on a worldwide basis. Although water molds have been studied extensively for their effects on host embryos, little information is available about how they affect post-embryonic amphibians. We tested the effects of one species of water mold, Saprolegnia ferax, in a comparative study of larvae of 4 amphibian species: Pseudacris regilla (Pacific treefrog), Rana cascadae (Cascades frog), Ambystoma macrodactylum (long-toed salamander), and R. aurora (red-legged …

The Natural History Of Cave-Associated Populations Of Eurycea L. Longicauda With Notes On Sympatric Amphibian Species, Kevin Wayne Saunders

Theses, Dissertations and Capstones

The purpose of this study was to collect data on the natural history of the Long-tailed Salamander (Eurycea l. longicauda) in eastern Kentucky and West Virginia. The objectives of this research included characterization of epigean and hypogean habitat for this species, recording distances moved by individuals in populations associated with caves, and collection of data on courtship, oviposition, and larval development. The primary study site was Carter Caves State Park in Olive Hill, Kentucky. This area was visited from October 2007 to December 2008. Salamanders were photographed for identification based on unique pattern aberrancies and distances were measured between the …

Distribution And Status Of The Northern Leopard Frog, Rana Pipiens, In West Virginia, Amanda Nicole Spriggs

Theses, Dissertations and Capstones

The Northern Leopard Frog, Rana pipiens, is listed as a species of concern by the West Virginia Division of Natural Resources. Because this species is uncommon in West Virginia, information is needed to understand its distribution and conservation needs. I surveyed 14 historic R. pipiens locations and 70 Wildlife Management Areas throughout West Virginia beginning in March 2008. Rana pipiens was found in four locations; Greenbottom Wildlife Management Area was confirmed through both auditory and visual surveys and the rest were confirmed through visual observations. Besides Greenbottom Wildlife Management Area, all other sites were confirmed by the presence of a …

A Reconnaissance Of The Intersex Condition In Micropterus Dolomieu Of The Upper Ohio River Basin As An Indicator Of Anthropogenic Endocrine Disruptors, Christopher Barry

Theses, Dissertations and Capstones

The intersex condition has been used as a marker of endocrine disruption in West Virginia. Fifty-two male smallmouth bass from 6 basins on the upper Ohio River were examined for the presence and severity of intersex. Vitellogenin (VTG) RNA levels were quantified as marker of estrogenic contaminants. A significant increase in intersex (p=0.02), ranging from 83.3% to 100%, corresponds with higher population densities and agricultural land (p=0.003). At reference sites, smallmouth bass had intersex frequencies of 16.7% to 33.3%. Vitellogenin results were significantly lower (p< 0.001) at impacted sites, consistent with previously reported results in female fish. VTG levels in males were not significantly different. Increased intersex occurrence in males and lowered VTG expression in females have shown that agricultural chemicals and common residential wastewater constituents are likely targets for exploring the relationship between individual EDCs and intersex. There may be a natural background level of the intersex condition.

Distribution Of Woodland Salamanders Of The Valley And Ridge In West Virginia, H. Reid Downer

Theses, Dissertations and Capstones

Two terrestrial woodland salamanders of the genus Plethodon, P. punctatus and P. virginia, are endemic to the Valley and Ridge Physiographic Province in West Virginia and Virginia and occupy limited geographic ranges. Two common and widespread species, P. cylindraceus and P. cinereus, also inhabit this region. To evaluate the distribution and habitat of these terrestrial salamanders I surveyed wooded ridges and slopes throughout the geographic range of the two endemic species by conducting daytime cover object searches and nocturnal visual encounter surveys. From March through November 2008, I recorded the presence of 321 woodland salamanders at 91 sites. I used …

Characterization Of 24 Microsatellite Loci In Delta Smelt, Hypomesus Transpacificus, And Their Cross-Species Amplification In Two Other Smelt Species Of The Osmeridae Family, Kathleen M. Fisch, Jessica Lynn Petersen, Melinda R. Baerwald, John K. Pedroia, Bernie May

Department of Animal Science: Faculty Publications

We characterized 24 polymorphic tetranucleotide microsatellite loci for delta smelt (Hypomesus transpacificus) endemic to the San Francisco Bay Estuary, California, USA. Screening of samples (n = 30) yielded two to 26 alleles per locus with observed levels of heterozygosity ranging from 0.17 to 1.0. Only one locus deviated from Hardy–Weinberg equilibrium, suggesting these individuals originate from a single panmictic population. Linkage disequilibrium was found in two pairs of loci after excluding the locus out of Hardy–Weinberg equilibrium. Twenty-two primer pairs cross-amplified in wakasagi smelt (Hypomesus nipponensis), and 15 primer pairs cross-amplified in longfin smelt ( …

Assessment Of River Herring And Striped Bass In The Connecticut River: Abundance, Population Structure, And Predator/Prey Interactions, Justin P. Davis, Eric T. Schultz, Jason Vokoun

EEB Articles

Populations of anadromous alewife Alosa pseudoharengus and blueback herring A. aestivalis, collectively referred to as river herring, have declined in the Connecticut River. An explanatory hypothesis for these declines is that predation pressures have increased as a result of recent increases in abundance of sympatric striped bass Morone saxatilis. We sampled river herring and striped bass from the stretch of the Connecticut River between Wethersfield, CT and Holyoke, MA during the vernal migration seasons of 2005-2008. The objectives of the sampling program were to assess abundance, temporal/spatial distribution, and population structure of both river herring and striped bass, …

Estimating Predation On Declining River Herring: Tag-Recapture Study Of Striped Bass In The Connecticut River, Eric T. Schultz, Justin P. Davis, Jason Vokoun

EEB Articles

Populations of anadromous alewife Alosa pseudoharengus and blueback herring Alosa aestivalis, collectively referred to as river herring, have declined in the Connecticut River. A hypothesis for why river herring have declined is that predation pressures have increased associated with recent increases in abundance of striped bass Morone saxatilis. Information on striped bass abundance, size structure, and consumption rates are required to test this hypothesis. This study was designed to provide estimates of striped bass population size in the Connecticut River during the spring migration season, via an intensive mark-recapture exercise and either an open or robust mark-recapture model. …

The Amphipod Orchomenella Pinguis — A Potential Bioindicator For Contamination In The Arctic, Lis Bach, Valery E. Forbes, Ingela Dahllöf

Valery Forbes Publications

Indigenous organisms can be used as bioindicators for effects of contaminants, but no such bioindicator has been established for Arctic areas. Orchomenella pinguis is a benthic amphipod, ubiquitous in the Arctic and can be found in high numbers. We collected O. pinguis at sites with different contamination levels. Population characteristics (body length distribution, average dry weight and amphipod organic content) were related to sediment contaminant concentrations, in order to identify suitable endpoints for using this species as a bioindicator. We show that O. pinguis was prevalent in both clean and contaminated areas, easy to sample and that its population characteristics …

Thirty-Seven Additional Microsatellite Loci In The Pacific Lion-Paw Scallop (Nodipecten Subnodosus) And Cross-Amplification In Other Pectinids, Jessica Lynn Petersen, Ana M. Ibarra, Bernie May

Department of Animal Science: Faculty Publications

We characterized 37 new microsatellite markers in the Pacific lion-paw scallop (Nodipecten subnodosus) and tested for cross-amplification in four other species. Genetic diversity was estimated using 24 individuals from the Lagoon Ojo de Liebre, B.C.S., Mexico. Allelic richness varied from 5 to 27 alleles per locus and the average expected heterozygosity was 0.76. Ten loci exhibited significant departure from Hardy–Weinberg equilibrium likely due to the presence of null alleles. Sixteen of these markers cross-amplified in closely related N. nodosus, while little or no amplification was observed in three Argopecten species.