Ecology and Evolutionary Biology Commons^™

Sampling Efficiency, Population Characteristics, And Potential Impacts Of Harvest Regulations On Three Riverine Species Of Catfish, Zachary Adam Mitchell

Masters Theses

No abstract provided.

Assessing Freshwater Mussels (Bivalvia: Unionidae) In South Dakota And Identifying Drivers Of Assemblage Variation, Kaylee L. Faltys

Electronic Theses and Dissertations

Native freshwater mussels (Family: Unionidae) are among the most threatened groups of freshwater fauna on Earth. Approximately 35 species have gone extinct since the 1900s and 72% of remaining species are considered endangered, threatened, or species of special concern. Unionid research can begin by establishing species presence and distributions via surveys. Objectives for this study were to 1) implement the first comprehensive unionid survey for South Dakota to assess distribution, composition, and decline, 2) estimate assemblage density and determine local versus broad scale habitat drivers of assemblage variation, and 3) determine areas of unionid conservation priority in South Dakota. Mussels …

An Investigation Of Juvenile Alewife (Alosa Pseudoharengus) Habitat Use And Growth Using Natural Markers, Gregory Norman Labonte Ms

All Student Scholarship

This research attempts to connect patterns in growth and migration of an anadromous species. The goal of this research was to understand habitat movements and growth of juvenile alewives (Alosa pseudoharengus) in the Penobscot Estuary and Bay through the use of otolith microchemistry, otolith growth increments, and a laboratory stable isotope turnover study. Understanding the connection between growth and movement of juvenile alewives may lead to more accurate and sophisticated conservation and restoration methods for anadromous species.

Demographics And Parasites Of Spotted Bass In The Wabash River, Evan C. Boone

Masters Theses

Spotted Bass Micropterus punctulatus Rafinesque are a popular sport fish primarily found in the streams and reservoirs of the south. The Wabash River, a large tributary of the Ohio River, contains a naturally reproducing population on the northern boundary of their range. Currently, the lower Wabash River is monitored using two different sampling designs, the Long Term Electrofishing Program monitors community assemblages using stratified random sampling whereas the Illinois Department of Natural Resources uses a fixed sampling design. Due to the wide distribution but low abundance of Spotted Bass throughout this drainage, captures from each design were compared to assess …

Diel And Seasonal Patterns Of Channel Catfish Movement And Habitat Use In The Lower Wabash River, Hanna Gibbs Kruckman

Masters Theses

Channel catfish Ictalurus punctatus are commonly found throughout the Mississippi River basin and support commercial and recreational fisheries in many large river systems. Understanding population demographics as well as movement patterns and habitat usage can provide a more holistic approach to species management and conservation. Within a 16-km stretch of the lower Wabash River, 27 channel catfish were implanted with acoustic transmitters to monitor fine scale movement and habitat use from September 2014 through April 2016. Channel catfish were located using active tracking during two types of tracking events. Site tracking occurred only during daylight hours and diel tracking monitored …

The Contribution Of Marine Aggregate-Associated Bacteria To The Accumulation Of Pathogenic Bacteria In Oysters: An Agent-Based Model, Andrew M. Kramer, J. Evan Ward, Fred C. Dobbs, Melissa L. Pierce

OES Faculty Publications

Bivalves process large volumes of water, leading to their accumulation of bacteria, including potential human pathogens (e.g., vibrios). These bacteria are captured at low efficiencies when freely suspended in the water column, but they also attach to marine aggregates, which are captured with near 100% efficiency. For this reason, and because they are often enriched with heterotrophic bacteria, marine aggregates have been hypothesized to function as important transporters of bacteria into bivalves. The relative contribution of aggregates and unattached bacteria to the accumulation of these cells, however, is unknown. We developed an agent-based model to simulate accumulation of vibrio-type bacteria …

A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Hsu-Kunag Chang, Fred C. Dobbs

OES Faculty Publications

The turbid, low-light waters characteristic of aquaculture ponds have made it difficult or impossible for previous video cameras to provide clear imagery of the ponds' benthic habitat. We developed a highly sensitive, underwater video system (UVS) for this particular application and tested it in shrimp ponds having turbidities typical of those in southern Taiwan. The system's high-quality video stream and images, together with its camera capacity (up to nine cameras), permit in situ observations of shrimp feeding behavior, shrimp size and internal anatomy, and organic matter residues on pond sediments. The UVS can operate continuously and be focused remotely, a …

Anthropomorphic Denial Of Fish Pain, Lynne U. Sneddon, Matthew C. Leach

Animal Sentience

Key (2016) affirms that we do not know how the fish brain processes pain but denies — because fish lack a human-like cortex — that fish can feel pain. He affirms that birds, like fish, have a singly-laminated cortex and that the structure of the bird brain is quite different from that of the human brain, yet he does not deny that birds can feel pain. In this commentary we describe how Key cites studies that substantiate mammalian pain but discounts the same kind of data as evidence of fish pain. We suggest that Key's interpretations are illogical, do not …

Fish Lack The Brains And The Psychology For Pain, Stuart W.G. Derbyshire

Animal Sentience

Debate about the possibility of fish pain focuses largely on the fish’s lack of the cortex considered necessary for generating pain. That view is appealing because it avoids relatively abstract debate about the nature of pain experience and subjectivity. Unfortunately, however, that debate cannot be entirely avoided. Subcortical circuits in the fish might support an immediate, raw, “pain” experience. The necessity of the cortex only becomes obvious when considering pain as an explicitly felt subjective experience. Attributing pain to fish only seems absurd when pain is considered as a state of explicit knowing.

Draft Genome Sequences For Seven Streptococcus Parauberis Isolates From Wild Fish In The Chesapeake Bay, Ashley Haines, Emily Nebergall, Elvira Besong, Kimaya Council, Onaysha Lambert, David Gauthier

Biological Sciences Faculty Publications

Streptococcus parauberis is a pathogen of cattle and fish, closely related Streptococcus uberis and Streptococcus iniae. We report the genomes of seven S. parauberis strains recovered from striped bass (Morone saxatilis) in the Chesapeake Bay. The availability of these genomes will allow comparative genomic analysis of Chesapeake Bay S. parauberis strains versus S. parauberis cultured from other animal hosts and geographic regions.

Juvenile Survival And Adult Return As A Function Of Freshwater Rearing Life History For Coho Salmon In The Klamath River Basin, Molly Gorman

Cal Poly Humboldt theses and projects

The Scott and Shasta rivers, Klamath River tributaries, experience spatial disparity in habitat quality in spring and summer as a result of historical and current land-use. Juvenile Coho Salmon (Oncorhynchus kisutch) born in the upper tributary reaches often rear in natal streams before migrating to sea. However, those born in the lower reaches often encounter unsuitable habitat and emigrate during their first spring to seek non-natal rearing habitats. It is assumed that these early outmigrants are population losses. This study evaluated first-summer survival, and contribution to the adult population, of non-natal rearing juveniles in the Klamath River Basin. …

The Status Of Fishes In The Missouri River, Nebraska: Selected Ancient Fishes, Kirk D. Steffensen

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Several ancient fish species have inhabited the Missouri River and its tributaries for thousands of years prior to major mainstem modifications and fragmentation. However post-anthropogenic modifications, populations of these ancient fish species have been highly diminished. Therefore, the objective of this study was to use historic and current ichthyological records to determine the past and present status for Chestnut Lamprey Ichthyomyzon castaneus, Silver Lamprey Ichthyomyzon unicuspis, Bowfin Amia calva, American Eel Anguilla rostrata, and Burbot Lota lota. Currently, these species are rarely captured and perhaps extirpated from Nebraska waters.

Response Of Fishes To Restoration Projects In Bayou St. John Located Within The City Of New Orleans, Louisiana, Including Hydrological Characterization And Hydrodynamic Modelling, Patrick W. Smith

LSU New Orleans Theses and Dissertations

Quantifying the impacts of restoration on coastal waterways is crucial to understanding their effectiveness. Here, I look at the impacts of multiple restoration projects on urban waterways within the city limits of New Orleans, LA, with an emphasis on the response of fishes. First I report the effects of two projects designed to improve exchange down estuary on the hydrologic characteristics of Bayou St. John (BSJ). Within BSJ, flow is dominated by subtidal wind driven processes. Removal of an outdated flood control structure did not appear to alter exchange in BSJ, but removal combined with sector gate openings did. I …

No Ordinary Fish Tale: Working Toward A Transnational Solution To The Cod Crisis In The Gulf Of Maine, Michael Ruderman

Indiana Law Journal

In response to a National Oceanic and Atmospheric Administration (NOAA) survey that showed “record-low levels of abundance” of groundfish in the Gulf of Maine (“Gulf”), local fisherman Brian Pearce asserted: “It concerns [me] that what [NOAA is] saying and what we [the local fishermen] are seeing is such a contrast . . . . Who sees more fish in the ocean than the fishermen?” Despite Mr. Pearce’s skepticism, the state of the cod fishery in the Gulf of Maine—home to “critical” and “legendary" fishing grounds in Canadian and American territories—is, in fact, dire. According to the NOAA survey, conducted in …

Spatial And Dietary Overlap Creates Potential For Competition Between Red Snapper (Lutjanus Campechanus) And Vermilion Snapper (Rhomboplites Aurorubens), William T. Davis, J. Marcus Drymon, Sean P. Powers

University Faculty and Staff Publications

Understanding the complex nature of direct and indirect species interactions is a critical precursor to successful resource management. In the northern Gulf of Mexico fisheries ecosystem, red snapper (Lutjanus campechanus) and vermilion snapper (Rhomboplites aurorubens) are two commercially harvested species within a larger reef fish complex. These two species share similar habitats and diets; however, little is known about how these species partition habitat and dietary resources. In this study we examined the extent of spatial and dietary overlap between red snapper and vermilion snapper, and experimentally compared their feeding behavior. Field data from multiple gear …

Research, Monitoring, Assessment And Development Plan 2015 – 2020, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Spreading Holiday Spirit And Northwestern Salamanders, Ambystoma Gracile (Baird 1859) (Caudata: Ambystomatidae), Across The Usa, Michael R. Rochford, Jeffrey M. Lemm, Kenneth Krysko, Louis A. Somma, Robert W. Hansen, Frank J. Mazzotti

Papers in Herpetology

Introduced species of amphibians and reptiles are of growing conservation concern (Bury and Luckenbach 1976; Krysko et al. 2011; Meshaka 2011). Unintentional introductions result largely from individuals escaping from enclosures or hitch-hiking in cargo or on vehicles, whereas intentional introductions occur primarily because a species is perceived to be of value to humans or from deliberately releasing sick or unwanted animals, including pets (Kraus 2009; Krysko et al. 2011). In Florida, most known introductions are directly related to the pet trade, but about 12% are related to the cargo pathway (Krysko et al. 2011). In this paper, we report the …

Interdisciplinary Modeling For Water-Related Issues Graduate Course, Laurel Saito, Alexander Fernald, Timothy Link

All ECSTATIC Materials

The science and management of aquatic ecosystems is inherently interdisciplinary, with issues associated with hydrology, atmospheric science, water quality, geochemistry, sociology, economics, environmental science, and ecology. Addressing water resources issues in any one discipline invariably involves effects that concern other disciplines, and attempts to address one issue often have consequences that exacerbate existing issues or concerns, or create new ones (Jørgensen et al. 1992; Lackey et al. 1975; Straskraba 1994) due to the strongly interactive nature of key processes (Christensen et al. 1996). Thus, research and management of aquatic ecosystems must be interdisciplinary to be most effective, but such truly …

Natural Shorelines Promote The Stability Of Fish Communities In An Urbanized Coastal System, Steven B. Scyphers, Tarik C. Gouhier, Jonathan H. Grabowski, Michael W. Beck, John Mareska, Sean P. Powers

University Faculty and Staff Publications

Habitat loss and fragmentation are leading causes of species extinctions in terrestrial, aquatic and marine systems. Along coastlines, natural habitats support high biodiversity and valuable ecosystem services but are often replaced with engineered structures for coastal protection or erosion control. We coupled high-resolution shoreline condition data with an eleven-year time series of fish community structure to examine how coastal protection structures impact community stability. Our analyses revealed that the most stable fish communities were nearest natural shorelines. Structurally complex engineered shorelines appeared to promote greater stability than simpler alternatives as communities nearest vertical walls, which are among the most prevalent …

Tolerance Of The Invasive New Zealand Mud Snail To Various Decontamination Procedures, Christopher N. Acy

Lawrence University Honors Projects

In an attempt to stop the spread of invasive species, state governments have established decontamination procedures for use on contaminated equipment. However, different species can tolerate various procedures depending on their morphology and physiology. The New Zealand mud snail (Potamopyrgus antipodarum) is invasive to the United States and may alter the food web of streams due to the snail’s high reproductive ability, causing potential problems for native trout populations and local economies. We collected mud snails from the recently invaded Black Earth Creek, WI and tested their tolerance to decontamination protocols being considered by the Wisconsin Department of …

Comparing Pseudo-Environmental And Horizontal Plus Pseudo-Environmental Transmission Of A Probiotic Janithinobacterium Lividum Between Green Frog Tadpoles, Stephen Simonetti

Senior Honors Projects, 2010-2019

The gram-negative bacteria, Janthinobacterium lividum (J.liv) is able to kill the pathogenic fungus known as Batrachochytrium dendrobatidis (Bd), which is known to be causing massive amphibian decline worldwide. The purpose of this research was to identify the ability of the probiotic bacteria, Janthinobacterium lividum (J.liv), to be horizontally transmitted from individual to individual and/or pseudo-environmentally transmitted from individual to environment and back to individual between Lithobates clamitans (green frog) tadpoles. Based on previous findings I hypothesized that pseudo-environmental and horizontal transmission will occur in tadpoles. This would be important for helping stop the decline of amphibians because it would provide …

Using Capture-Mark-Recapture Techniques To Estimate Detection Probabilities & Fidelity Of Expression For The Critically Endangered James Spinymussel (Pleurobema Collina)., Alaina C. Esposito

Masters Theses, 2010-2019

The critically endangered James Spinymussel (Pleurobema collina) is a species of freshwater mussel endemic to Virginia’s James and Dan River basins. In the last 20 years, P. collina has experienced a substantial decline in numbers and currently occupies approximately 10% of its original habitat; however, little information is known about this species to assist in conservation. A 230-meter reach of transitional habitat in Swift Run was selected for repeat observations to estimate detection probabilities using a Capture-Mark-Recapture framework. In June 2014, visual scouting began to locate and tag P. collina (including other mussels in the community) with PIT …

Fisheries Management Paper No 274 - Finfish Resources Of The Peel-Harvey Estuary - Harvest Strategy 2015-2020 (Version 1.0), Department Of Fisheries, Western Australia

Fisheries Management Papers

WEST COAST ESTUARINE MANAGED FISHERY (AREA 2)

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support the decision-making processes required to ensure the management of these resources are consistent with the principles of Ecologically Sustainable Development (ESD). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2013 (ARMB), Clause 9, which will replace the FRMA once enacted.

The publication of these strategies is intended to make the decision-making considerations and processes …

Genetic And Morphological Variation In Ecuadorian Astroblepid Catfishes, Katherine M. Lawry

School of Natural Resources: Dissertations, Theses, and Student Research

The Andean ichthyofauna remains a poorly understood component of Neotropical biodiversity, and stands in stark contrast to the lowland ichthyofauna in terms of number of species and range of distribution. The Climate Variability Hypothesis (CVH) predicts rapid turnover of species along elevational gradients in tropical climates, but it remains unclear whether stream fishes follow this pattern. Astroblepid catfishes represent a distinctive assemblage of species that inhabit high elevation streams throughout the Andes from Panama to Bolivia, and constitute the only native fish family present in the Ecuadorian highland region. In this research, population samples of Astroblepids collected throughout Ecuador’s Napo …

Ecology And Management Of Superabundant Fish Populations, Nathaniel T. Stewart

School of Natural Resources: Dissertations, Theses, and Student Research

Fish population biomasses can reach extreme levels; we term these populations superabundant fish populations. Superabundant fish populations may negatively affect aquatic communities and anglers, necessitating the effective management of the superabundant fish populations. However, there are gaps in our understanding of these populations. The gaps in our understanding hamper our ability to predict effects on valuable sportfisheries and to effectively manage superabundant fish populations. The overall goal of my thesis research is to provide further insight into the ecology of superabundant fish populations and to provide information that will aid in their effective management. First, we described a new method …

Bioenergetics And Habitat Suitability Models For The Chinese Mystery Snail (Bellamya Chinensis), Danielle M. Haak

School of Natural Resources: Dissertations, Theses, and Student Research

Relatively little is known about the invasive Chinese mystery snail (Bellamya chinensis). This research aims to elucidate some of the mystery surrounding this species. First, we place the species in context with other invasive freshwater snails of the USA and Canada, identifying current information gaps, categorizing shared characteristics among families and species, and comparing functional roles and ecological effects of freshwater snails. We conclude that more focus needs to be directed to regulating the aquarium, pet, and food trades if we are serious about preventing future invasions. Next, we develop a bioenergetics model for the species by quantifying …

Effects Of Pre-Release Physical Stressors On Post-Release Success Of Hatchery-Reared Spotted Seatrout, Taylor Westbrook Guest

Master's Theses

Alteration of habitat associated with coastal development and increased demand for food and recreation can result in the depletion of fisheries resources such as the Spotted Seatrout (Cynoscion nebulosus), the Gulf of Mexico’s most popular recreational fish. Stock enhancement, or the release of cultured fish to supplement wild populations, is one potential tool for managing important fisheries resources. Although much effort has gone into marine stock enhancement, the effectiveness of stocking is not well established, and techniques for ensuring success have not been developed. Although the basic biology of the Spotted Seatrout is well known, comparatively little is known about …

Intestinal Parasite Loads Of Minnows In Eastern Kentucky Streams, Seth H. Bromagen

Morehead State Theses and Dissertations

A Thesis Presented to the Faculty of the College of Science and Technology Morehead State University in Partial Fulfillment of the Requirements for the Degree Master of Science by Seth H. Bromagen on April 13, 2015.

Isotopic Incorporation Rates And Discrimination Factors In Mantis Shrimp Crustaceans., Maya Devries, Carlos Del Rio, Tate Tunstall, Todd Dawson

Faculty Publications, Biological Sciences

Stable isotope analysis has provided insights into the trophic ecology of a wide diversity of animals. Knowledge about isotopic incorporation rates and isotopic discrimination between the consumer and its diet for different tissue types is essential for interpreting stable isotope data, but these parameters remain understudied in many animal taxa and particularly in aquatic invertebrates. We performed a 292-day diet shift experiment on 92 individuals of the predatory mantis shrimp, Neogonodactylus bredini, to quantify carbon and nitrogen incorporation rates and isotope discrimination factors in muscle and hemolymph tissues. Average isotopic discrimination factors between mantis shrimp muscle and the new diet …

Marine Animalia Organism Diversity And Reef Condition On Two Reef Sites At Big Creek Beach And Boca Del Drago, Bocas Del Toro, Panamá, Bri Tiffany

Independent Study Project (ISP) Collection

Ocean acidification, climate change, overfishing, and coastal development are endangering coral reefs across the globe. In Bocas del Toro, Panamá, coral reefs are especially threatened by the rapid growth in tourism and the subsequent anthropogenic effects caused by an increased human presence. To evaluate reef condition in this area, a study comparing percent coverage of live and dead coral as well as the diversity of marine Animalia organisms was conducted at one reef site in Big Creek beach and one reef site in Boca del Drago, Isla Colón, Bocas del Toro. It was predicted that dead coral cover would be …