Biology Commons^™

Fisheries Occasional Publication No.70 - Stakeholder Survey 2008, Tara Baharthah

Fisheries Occasional Publications

A telephone survey of Department of Fisheries’ stakeholders was conducted in August 2008 in order to evaluate their perception of the Department’s management of commercial and recreational fishing, pearling and aquaculture, and fish and fish habitat protection. The survey also assessed satisfaction with the level of service provided to stakeholders and their involvement in decision making processes. The results of this survey were compared to similar surveys conducted during 2002, 2004, 2006 and a survey of the general public conducted during 2008. The sample comprised of 149 interviews – 39 representing the commercial fishing sector, 41 representing the recreational fishing …

Consumer-Driven Nutrient Recycling In Arctic Alaskan Lakes: Controls, Importance For Primary Productivity, And Influence On Nutirient Limitation, Cody R. Johnson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In lakes, fish and zooplankton can be both sources and sinks of nitrogen (N) and phosphorus (P) through the consumption of organic N and P, and subsequent excretion of bioavailable inorganic forms. These source/sink dynamics, known as consumer-driven nutrient recycling (CNR), may, in turn, control the availability of potentially limiting nutrients for algal primary production. In this dissertation I investigate the importance and controls of CNR as a source of inorganic N and P for primary production (Chapter 2). I then examine zooplankton CNR as a mechanism for increasing nutrient mean resident time (MRT) in the mixed layer of lakes …

Fisheries Occasional Publication No. 63 - Western Rock Lobster Ecological Risk Assessment, Department Of Fisheries, Western Australia, International Risk Consultants Group Of Companies

Fisheries Occasional Publications

This Ecological Risk Assessment, conducted by IRC Environment (part of International Risk Consultants) and Department of Fisheries WA (FWA) was the result of an initiative by the WA Fishing Industry Council (WAFIC) and (FWA). This report is based on a risk assessment workshop undertaken in February 2001 at the FWA Marine Research Laboratories in Waterman but includes additional background material to justify some of the rankings of the workshop.

The broad intent of the workshop was to provide a register of the potential main ecological risks that arise from the various activities carried out by the western rock lobster (WRL) …

Estrogenic Compounds Downstream From Three Small Cities In Eastern Nebraska: Occurrence And Biological Effect, Marlo K. Sellin, Daniel D. Snow, Debbie L. Akerly, Alan S. Kolok

Biology Faculty Publications

Recent studies have detected estrogenic compounds in surface waters in North America and Europe. Furthermore, the presence of estrogenic compounds in surface waters has been attributed, in some cases, to the discharge of wastewater treatment plant (WWTP) effluent. The primary objective of the current study was to determine if WWTP effluent contributes estrogens to the surface waters of Nebraska. A second objective of this study was to determine if estrogens were found in concentrations sufficient enough to manifest feminizing effects on fish. These objectives were satisfied by deploying polar organic chemical integrative samplers (POCIS) and caged fathead minnows at eight …

Double-Stranded Rna-Activated Protein Kinase Pkr Of Fishes And Amphibians: Varying The Number Of Double-Stranded Rna Binding Domains And Lineage-Specific Duplications, Loubna Tazi, Stefan Rothenburg, Nikolaus Deigendesch, Madhusudan Dey, Thomas E. Dever

Faculty Publications

Double-stranded (ds) RNA, generated during viral infection, binds and activates the mammalian anti-viral protein kinase PKR, which phosphorylates the translation initiation factor eIF2alpha leading to the general inhibition of protein synthesis. Although PKR-like activity has been described in fish cells, the responsible enzymes eluded molecular characterization until the recent discovery of goldfish and zebrafish PKZ, which contain Z-DNA-binding domains instead of dsRNA-binding domains (dsRBDs). Fish and amphibian PKR genes have not been described so far. Results- Here we report the cloning and identification of 13 PKR genes from 8 teleost fish and amphibian species, including zebrafish, demonstrating the coexistence of …

Molecular Cloning And Sequence Analysis Of Multiple Cdna Variants For Thyroid-Stimulating Hormone Β Subunit (Tshβ) In The Fathead Minnow (Pimephales Promelas), Sean C. Lema, Jon T. Dickey, Penny Swanson

Biological Sciences

We cloned and sequenced full-length cDNAs encoding the β subunit of thyroid-stimulating hormone (TSHβ) from the pituitary of fathead minnow (Piephales promelas)using 5'-and 3'-rapid amplification of cDNA ends (RACE). Three cDNA variants for TSHβ with lengths of 1184-, 1093-, and 818-bp were identified. The cDNA variant of 1184-bp included 453-bp of open-reading frame and 610-bp of 3' UTR followed by a poly(A)site. This cDNA encodes 150 amino acids including a 19 residue signal peptide and a mature TSHβ protein of 131 residues with sequence identities of 97–53% to other fishes and 42–39% to mammals. The 1093-bp cDNA variant …

Optimal Data Partitioning And A Test Case For Ray-Finned Fishes (Actinopterygii) Based On Ten Nuclear Loci, Chenhong Li, Guoqing Lu, Guillermo Orti

Biology Faculty Publications

Data partitioning, the combined phylogenetic analysis of homogeneous blocks of data, is a common strategy used to accommodate heterogeneities in complex multilocus data sets. Variation in evolutionary rates and substitution patterns among sites are typically addressed by partitioning data by gene, codon position, or both. Excessive partitioning of the data, however, could lead to overparameterization; therefore, it seems critical to define the minimum numbers of partitions necessary to improve the overall fit of the model. We propose a new method, based on cluster analysis, to find an optimal partitioning strategy for multilocus protein-coding data sets. A heuristic exploration of alternative …

The Bertalanffy Growth Equation: Theory Of Paulys Auximetric Plots, Eric L. Charnov

Biology Faculty & Staff Publications

No abstract provided.

The Long And Winding Road: Influences Of Intracellular Metabolite Diffusion On Cellular Organization And Metabolism In Skeletal Muscle, Stephen T. Kinsey, Kristin M. Hardy, Bruce R. Locke

Biological Sciences

A fundamental principle of physiology is that cells are small in order to minimize diffusion distances for O₂ and intracellular metabolites. In skeletal muscle, it has long been recognized that aerobic fibers that are used for steady state locomotion tend to be smaller than anaerobic fibers that are used for burst movements. This tendency reflects the interaction between diffusion distances and aerobic ATP turnover rates, since maximal intracellular diffusion distances are ultimately limited by fiber size. The effect of diffusion distance on O₂ flux in muscle has been the subject of quantitative analyses for a century, but the …

A Practical Approach To Phylogenomics: The Phylogeny Of Ray-Finned Fish (Actinopterygii) As A Case Study, Chenhong Li, Guillermo Orti, Gong Zhang, Guoqing Lu

Biology Faculty Publications

Background: Molecular systematics occupies one of the central stages in biology in the genomic era, ushered in by unprecedented progress in DNA technology. The inference of organismal phylogeny is now based on many independent genetic loci, a widely accepted approach to assemble the tree of life. Surprisingly, this approach is hindered by lack of appropriate nuclear gene markers for many taxonomic groups especially at high taxonomic level, partially due to the lack of tools for efficiently developing new phylogenetic makers. We report here a genome-comparison strategy to identifying nuclear gene markers for phylogenetic inference and apply it to the …

Threatened Fishes Of The World: Percilia Irwini (Eigenmann 1927) (Perciliidae), Evelyn Habit, Mark C. Belk

Faculty Publications

Common name: Carmelita de Concepcion (Spanish).

Assessment Of The Status Of Lates Stappersii (Centropomidae) Stock In Lift-Net Fishery In Lake Tanganyika, Kigoma, Tanzania, I. A. Kimirei, Y. D. Mgaya

Tanzania Journal of Science

An assessment of the status of Lates stappersii (Boulenger, 1914) stock in the lift-net fishery in Lake Tanganyika, Kigoma area, was carried out from January to December 2003. Results indicated that breeding is seasonal with peaks in February, July-August and December, and so was catch composition, with peaks in March, May and July–August that followed the abundance of its prey, Stolothrissa tanganicae. Catch per unit effort was similar between wet and dry seasons and peaked synchronously at all study sites probably as an indication of its abundance during those months; but also it could mean that the fishes were caught …

Environmental Rearing Conditions Produce Forebrain Differences In Wild Chinook Salmon Oncorhynchus Tshawytscha, R. L. Kihslinger, Sean C. Lema, G. A. Nevitt

Biological Sciences

Recent studies suggest that hatchery-reared fish can have smaller brain-to-body size ratios than wild fish. It is unclear, however, whether these differences are due to artificial selection or instead reflect differences in rearing environment during development. Here we explore how rearing conditions influence the development of two forebrain structures, the olfactory bulb and the telencephalon, in juvenile Chinook salmon (Oncorhynchus tshawytscha) spawned from wild-caught adults. First, we compared the sizes of the olfactory bulb and telencephalon between salmon reared in a wild stream vs. a conventional hatchery. We next compared the sizes of forebrain structures between fish reared …

Population Divergence In Plasticity Of The Avt System And Its Association With Aggressive Behaviors In A Death Valley Pupfish, Sean C. Lema

Biological Sciences

Behavioral differences can evolve rapidly in allopatry, but little is known about the neural bases of such changes. Allopatric populations of Amargosa pupfish (Cyprinodon nevadensis) vary in aggression and courtship behaviors in the wild. Two of these wild populations were recently found to differ in brain expression of arginine vasotocin (AVT)—a peptide hormone shown previously to modulate aggression in pupfish. These populations have been isolated for less than 4000 years, so it remained unclear whether the differences in behavior and neural AVT phenotype were evolved changes or plastic responses to ecologically dissimilar habitats. Here, I tested whether these …

Occurrence Of Metacercariae Of Diplostomum And Tylodelphys Species (Diplostomidae) In Clarias Species (Clariidae) Fishes From Lake Victoria, M. J. Musiba, G. Nkwengulila

Tanzania Journal of Science

The localisation and abundance of the metacercariae of Diplostomum and Tylodelphys species among the clariids of Lake Victoria were investigated between April and December 2001. Four species viz. Clarias gariepinus (271), C. alluaudi (65), C. werneri (50) and C. liocephalus (47) were examined, but only C. gariepinus was infected in the brain case and along the nasal cavity. Prevalence of metacercariae was high (>70%). Prevalence and mean intensity were similar between male and female fish. Mean intensity increased with fish size and declined in larger fish for D. mashonense; but declined with the increase in fish size for Tylodelphys …

Fish Species And Size Distribution And Abundance In Different Areas In Lake Victoria, Tanzania, A I Chande, H A Mhitu

Tanzania Journal of Science

The study was carried out to investigate fish species distribution and abundance in different areas and size structure variations according to depth in Lake Victoria, Tanzania. Data were collected using a bottom trawl net during rainy and dry seasons in 2002. The results show that there were significant differences in catch rates between rainy and dry seasons (F (12, 12) = 2.69; p < 0.05). The rainy season recorded higher catch rates (36.25 - 106.61 kg/hr) than during the dry season (14.30 - 67.90 kg/hr). The haplochromines catch rates were higher during the dry season (11.08 kg/hr) than during the rainy season (7.72 kg/hr), however, the differences were not significant (c2 = 0.60, df = 1, p > 0.05). The distribution of the fish species in different areas recorded a significant difference during the dry season (Q = 18.254, df = 8, P < 0.001), while during the rainy season the difference was not significant (Q = 10.667, df = 8, P > 0.001). Moreover, the results show that small individuals dominated in shallow waters …

Proliferation Zones In The Salmon Telencephalon And Evidence For Environmental Influence On Proliferation Rate, Sean C. Lema, Mark J. Hodges, Michael P. Marchetti, Gabrielle A. Nevitt

Biological Sciences

Cell proliferation occurs in the brain of fish throughout life. This mitotic activity contributes new neurons to some brain subdivisions, suggesting potential for plasticity in neural development. Recently we found that the telencephalon in salmonids (salmon, trout) is significantly reduced in fish reared in hatcheries compared to wild fish, and that these differences resulted in part from rearing conditions. Here, we describe localized areas of cell proliferation in the telencephalon of juvenile coho salmon (Oncorhynchus kisutch) and begin to explore whether mitotic activity in these areas is sensitive to environmental conditions. Using the 5-bromo-2'-deoxyuridine (BrdU) cell birthdating technique, …

The Effect Of Changing Environmental Stimuli On Betta Splendens Behavior, Jessica Kingsley

Honors Capstones

Capstone submitted as a graduation requirement for the BSU Honors program.

Spatial Distribution Of Parasites Along The Gut Of The Catfish Clarias Gariepinus (Burchell, 1822) (Clariidae) From The Mwanza Gulf, Lake Victoria, G Nkwengulila, C Mwita

Tanzania Journal of Science

The diversity, abundance and spatial distribution of parasites in the alimentary tract of Clarias gariepinus from the Mwanza Gulf were investigated. Ten parasite species were recovered; the Trematoda, Cestoda and Nematoda were each represented by three species while Dolops ranarum was the only crustacean recovered from the posterior part of the buccal cavity. Parasites diversity was highest in the small intestine and the stomach. Although the gut community of C. gariepinus studied was rich in intensity and individual numbers of helminth species, helminth infection in most sections of the gut comprised of monospecific infection and thus cohabiting interspecific interaction was …

Total Mercury Concentration In Common Fish Species Of Lake Victoria, Tanzania, J F Machiwa

Tanzania Journal of Science

Total mercury (THg) concentration was analysed in muscles of common fish species of Lake Victoria in the eastern and southern parts of the lake using cold vapour Atomic Absorption Spectrophotometric technique. Mercury concentration in all fish species was generally lower than the WHO maximum allowable concentration (500 ng/g ww) in edible fish parts. The maximum concentration of THg in Lates niloticus samples was 396 ng/g ww. Samples of Oreochromis niloticus had THg concentration ranging between <0.01 and 419 ng/g ww. Clarias gariepinus had THg concentration ranging between 1.2 and 239.1 ng/g ww. All less common fish species, such as, Labeo victirianus, Synodontis victoriae, Oreochromis leucostictus, Schilbe intermedius, Brycinus jacksonii, B. sadleri, Tilapia rendalii, Tilapia zilii and Haplochromines had THg concentration below the WHO maximum allowable limit (500 ng/g ww). The study showed that Hg from small-scale gold mining activities in Lake Victoria basin is not transported to the lake by fluvial discharge. Other possible pathways of Hg input to Lake Victoria are discussed.

Studies On The Fisheries And Biology Of Oreochromis Urolepsis (Pisces: Cichilidae) In The Mtera Resorvoir (Tanzania), F M M Chale

Tanzania Journal of Science

The fisheries and some aspects of the biology of Oreochromis urolepis of the Mtera Reservoir (Tanzania) were examined in August 2002. It was observed that there was no proper management of the reservoir's fisheries. Beach seine fishing dominated the fishery. Nearly all the O. urolepis caught by this type of gear were juveniles. The number of fish caught by the beach seines was very high, some times up to 4,000 fish per haul. The beach seines also destroy the spawning sites for the tilapias. Mean total lengths of O. urolepis caught in gillnets of legal mesh sizes (ranging from 88 …

Exogenous Vasotocin Alters Aggression During Agonistic Exchanges In Male Amargosa River Pupfish (Cyprinodon Nevadensis Amargosae), Sean C. Lema, Gabrielle A. Nevitt

Biological Sciences

Pupfishes in the Death Valley region have rapidly differentiated in social behaviors since their isolation in a series of desert streams, springs, and marshes less than 20,000 years ago. These habitats can show dramatic fluctuations in ecological conditions, and pupfish must cope with the changes by plastic physiological and behavioral responses. Recently, we showed differences among some Death Valley populations in brain expression of arginine vasotocin (AVT). As AVT regulates both hydromineral balance and social behaviors in other taxa, these population differences may indicate adaptive changes in osmoregulatory and/or behavioral processes. To test whether AVT is relevant for behavioral shifts …

Size And Temperature In The Evolution Of Fish Life Histories, Eric Charnov, James Gillooly

Biology Faculty & Staff Publications

Body size and temperature are the two most important variables affecting nearly all biological rates and times, especially individual growth or production rates. By favoring an optimal maturation age and reproductive allocation, natural selection links individual growth to the mortality schedule. A recent model for evolution of life histories for species with indeterminate growth, which includes most fish, successfully predicts the numeric values of two key dimensionless numbers and the allometry of the average reproductive allocation versus maturation size across species. Here we use this new model to predict the relationships of age-at-maturity, adult mortality and reproductive effort to environmental …

Bergmann's Rule In Ectotherms: A Test Using Freshwater Fishes, Mark C. Belk, Derek D. Houston

Faculty Publications

Understanding patterns of variation in body size within and among species is a central question in evolutionary ecology (Schlichting and Pigliucci 1998). The most well known pattern of variation in body size is Bergmann's rule (Bergmann 1847; Mayr 1956). The intraspecific version of Bergmann's rule holds that within endothermic species, body size increases with increasing latitude (or decreasing temperature; Blackburn et al. 1999; Ashton et al. 2000). In general, mammals conform to this rule (Ashton et al. 2000).

The Diversity And Abundance Of Parasites In Age Groups Of Yellow Perch In Lake Bemidji, Mn Applied To A Whittaker Curve, Kelly J. Main

Honors Capstones

Capstone submitted as a graduation requirement for the BSU Honors Program.

Performance Limits Of Labriform Propulsion And Correlates With Fin Shape And Motion, Jeffrey A. Walker, Mark W. Westneat

Biology

Labriform locomotion, which is powered by oscillating the paired pectoral fins, varies along a continuum from rowing the fins back and forth to flapping the fins up and down. It has generally been assumed (i) that flapping is more mechanically efficient than rowing, a hypothesis confirmed by a recent simulation experiment, and (ii) that flapping should be associated with wing-shaped fins while rowing should be associated with paddle-shaped fins, To determine whether these hypotheses and the results of the simulation experiment are consistent with natural variation, we compared the steady swimming performance (critical swimming speed) of four species of labrid …

Performance Limits Of Labriform Propulsion And Correlates With Fin Shape And Motion, Jeffrey A. Walker Phd, Mark W. Westneat

Faculty Publications

Labriform locomotion, which is powered by oscillating the paired pectoral fins, varies along a continuum from rowing the fins back and forth to flapping the fins up and down. It has generally been assumed (i) that flapping is more mechanically efficient than rowing, a hypothesis confirmed by a recent simulation experiment, and (ii) that flapping should be associated with wing-shaped fins while rowing should be associated with paddle-shaped fins, To determine whether these hypotheses and the results of the simulation experiment are consistent with natural variation, we compared the steady swimming performance (critical swimming speed) of four species of labrid …

Longitudinal Variation In Muscle Protein Expression And Contraction Kinetics Of Largemouth Bass Axial Muscle, Tierney M. Thys, Jason M. Blank, David J. Coughlin, Fred Schachat

Biological Sciences

The present study investigates muscle protein expression in largemouth bass Micropterus salmoides through intra- and intermyomeric comparisons of white muscle. Using denaturing SDS-polyacrylamide gel electrophoresis, muscle protein expression in the arm and cone regions of sequential myomeres was compared for three bass. Low percentage (4.75 %) polyacrylamide-SDS gels and cyanogen bromide (CNBr) peptide mapping revealed no obvious intramyomeric differences between the myosin heavy chains of the arm and cone regions. Electrophoresis of myofibrils and muscle homogenates on higher percentage gels also failed to demonstrate any significant differences between arm and cone regions in either the myosin light chains or any …

Reproductive Constraints And The Evolution Of Life Histories With Indeterminate Growth, Eric Charnov, Thomas Turner, Kirk Winemiller

Biology Faculty & Staff Publications

This article develops a new evolutionary model for life histories by combining a new production-growth model with some general, yet specific, constraints on reproductive allocation, and by allowing natural selection to adjust the age of first breeding and the metabolic/productive capacity of cells. The optimal life histories correctly predict the numeric value of dimensionless numbers that combine maturation age (size), mortality, and reproductive allocation. The life-history prediction also yields a new lifetime growth model for body mass under indeterminate growth and predicts that the fastest growth rate will be near the size at first reproduction. Table 1 is a glossary …

Trophic Cascades, Nutrients, And Lake Productivity: Whole-Lake Experiments, Stephen R. Carpenter, Jonathan J. Cole, James R. Hodgson, James F. Kitchell, Michael L. Pace, Darren Bade, Kathryn L. Cottingham

Dartmouth Scholarship

Responses of zooplankton, pelagic primary producers, planktonic bacteria, and CO2 exchange with the atmosphere were measured in four lakes with contrasting food webs under a range of nutrient enrichments during a seven-year period. Prior to enrichment, food webs were manipulated to create contrasts between piscivore dominance and planktivore dominance. Nutrient enrichments of inorganic nitrogen and phosphorus exhibited ratios of N:P > 17:1, by atoms, to maintain P limitation. An unmanipulated reference lake, Paul Lake, revealed baseline variability but showed no trends that could confound the interpretation of changes in the nearby manipulated lakes. Herbivorous zooplankton of West Long Lake (piscivorous fishes) …