Biology Commons^™

Effects Of Environmental And Anthropogenic Factors On The Range Contraction Of Bird And Mammal Species, Patrice M. Betz

Master's Theses or Doctor of Nursing Practice

The largest contributor to biodiversity loss is habitat destruction caused by humans. A common consequence of habitat destruction is a reduction in the geographic range of a species. Little research has been done to separate the contribution of anthropogenic and environmental variables to the extinction or persistence of species that have experienced range contraction. In this thesis, I examined the relative effects of several variables (elevation, mean annual precipitation, mean annual temperature, human population density, distance from roads, and proportion of land converted to built-up land, cropland, and rangeland) on the geographic ranges of declining bird and mammal species from …

Home Range, Habitat Use, And Movements Of Native Northern Map Turtles (Graptemys Geographica), And Sympatric Invasive Red-Eared Slider Turtles (Trachemys Scripta Elegans), In The Upper Niagara River, Brian E. Haas

Biology Theses

Turtle populations throughout the world are in decline due to the effects associated with anthropogenic disturbances. Northern map turtles in the Upper Niagara River are facing the same effects associated with shoreline development, pollution, and human induced mortality. A biotelemetric study was conducted to understand the population structure, habitat use, and behavior of northern map turtles in the Upper Niagara River. Turtles were trapped, outfitted with radio and sonic transmitters, and tracked from August 2013 until April 2015. Invasive red-eared sliders, which also inhabit the Niagara River were captured and tracked to allow for comparison. This invasive species is a …

Analysis Of Seed Preference Trials Of Red Veld Rats And Smith's Bush Squirrels And Trap Effectiveness In The Lowveld Of South Africa, Brooke A. Barber

Mahurin Honors College Capstone Experience/Thesis Projects

Large tree species in South Africa face reproductive decline, especially older trees that provide ecosystem connectivity. Management of Balule Nature Reserve, an extensive private nature reserve in South Africa, wanted to investigate the roles rodents play in the recruitment and survival of select tree species. Two large tree species of concern, marula (Sclerocarya birrea) and knobthorn acacia (Acacia nigrescens) are dominant, habitat providers and red bushwillow (Combretum apiculatum) is a smaller and more common, prolific seed producer. I investigated whether rodents, specifically red veld rats and Smith’s bush squirrels, may play a detrimental role …

Assessing The Vulnerability Of Coastal Marsh Birds To Sea Level Rise In The South Atlantic Coast, Nicolette Roach

All Theses

Global wetland degradation and loss is occurring at a rapid rate, and in the United States over 50% of wetlands in the lower 48 states have been altered since European settlement. In some cases, wetlands that were historically transformed for agriculture are now managed as wetland habitat. We conducted occupancy surveys for black rails (Latterallus jamaicensis) in managed and unmanaged areas of coastal South Carolina. We modeled landscape and local factors potentially influencing occupancy and we assessed whether these habitat associations indicated vulnerability following expected alterations from sea level rise. Black rails occupied 17 of 344 sites surveyed. Landscape factors …

Distinguishing The Neches River Rose Mallow, Hibiscus Dasycalyx, From Its Congeners Using Dna Sequence Data And Niche Modeling Methods, Melody P. Sain

Biology Theses

The accurate identification of species that are in need of protection is one of the most essential challenges of conservation biology (Lovich and Gibbons, 1997). When deciding if a species needs conservation protection, there are two main scientific concerns that must be addressed: (1) determining if the taxonomic standing of the target species is upheld (i.e., if it is a real, rare species) and (2) deciding where the target species occurs or is likely to occur. In this study we used an integrative approach combining ecological niche modeling and molecular genetics to understand the taxonomy of a federally threatened Hibiscus …

Population Genomic Inference Of Ecology, Conservation, Evolution, And Demographic History Of Atlantic Seahorses And Pipefishes (Syngnathidae), Joel Thomas Boehm

Dissertations, Theses, and Capstone Projects

In the Atlantic Ocean powerful directional ocean currents can play a significant role in the formation and persistence of marine species. Syngnathidae fishes have a sparse fossil record, high morphological plasticity, and many of these species are difficult to observe in the wild, therefore they frequently lack life history information and the status of regional lineages and species designations are often obscure. In this dissertation I explore the ecology, evolution, and conservation of primarily Atlantic seahorses (Hippocampus) and pipefish (Syngnathus) in four core chapters, using differing genetic datasets ranging from mitochondrial DNA to genome-wide RAD sequences. Most Synganthids have the …

The Coastal Monitor: Vol. 1, No. 1, John Tanacredi Ph.D.

The Coastal Monitor

The Center for Environmental Research and Coastal Oceans Monitoring (CERCOM) is a scientific coastal research center and field station dedicated to exploring our global coastal environments and near-shore oceans. CERCOM is the field station support facility for all sciences at Molloy College and services the degree programs of Biology, Chemistry, and Environmental Studies, with special attention to a B.S. degree in Earth and Environmental Studies. Located at the West Sayville Boat Basin on the Great South Bay, CERCOM is a 2,500 sq. ft. field station estuarine/ marine science laboratory where environmental monitoring and analysis is conducted 365 days a year.

A Popular And Potentially Sustainable Fishery Resource Under Pressure-Extinction Risk And Conservation Of Brazilian Sciaenidae (Teleostei: Perciformes), Ning L. Chao, Flávia L. Frédou, Manuel Haimovici, Monica B. Peres, Beth Polidoro, Marcelo Raseira, Rosana Subira, Kent E. Carpenter

Biological Sciences Faculty Publications

Croakers (Sciaenidae) are major fishery resource in Brazil; constituting 22% of marine and 9% of freshwater fishery landings. Croakers are subject to heavy fishing pressure throughout Brazil, but habitat alteration is also an important threat to regional populations. In this regional Sciaenidae assessment, each species was analyzed for relative risk of extinction, including the identification and quantification of the impact of major threats and existing conservation measures, based on application of the Categories and Criteria of the IUCN Red List of Threatened Species. Of the 52 species of Sciaenid fishes (34 marine and 18 freshwater) present in Brazilian waters, the …

Y Chromosome Genetic Diversity And Breed Relationships In Native Polish Cattle Assessed By Microsatellite Markers, Beata Prusak, Wioletta Sawicka-Zugaj, Agnieszka Korwin-Kossakowska, Tomasz Grzybowski

Turkish Journal of Biology

Cattle provide a wide range of products and services to humans; thus the significance of conservation of livestock genetic resources is evident. We analyzed the genetic variability of five Y-chromosomal microsatellites in 395 bulls representing six cattle breeds (Polish Red, Polish Whitebacks, Polish Red-and-White, Polish Black-and-White, Polish Holstein Friesian, and Simmental). We identified three haplotypes in the paternal gene pool of analyzed populations. Haplotype diversity was low and frequencies ranged from 9.87% to 100%. In Polish autochthonous breeds (Polish Red, Polish Whitebacks), we detected two and three haplotypes. The network analysis revealed that tested bulls of both breeds were distributed …

Landscape Genetics Of The Endangered California Tiger Salamander (Ambystoma Californiense) In The Los Vaqueros Watershed, Ryan Neal Vincent

Mahurin Honors College Capstone Experience/Thesis Projects

Genetic diversity is essential for maintaining healthy biological systems, and dispersal-mediated gene flow increases genetic diversity by introducing new alleles to a gene pool. Populations that frequently experience gene flow will show characteristic similarities in allele frequencies. Measuring genetic diversity among many populations across a landscape has proven to be a powerful approach for assessing the ways that habitat discontinuities may affect patterns of gene flow, and in turn, influence allele frequencies and population dynamics. This study examines the landscape-level population genetic structure of the California tiger salamander, Ambystoma californiense, within the Los Vaqueros Watershed of Contra Costa County, …

Park Rangers' Behaviors And Their Effects On Tourists And Tibetan Macaques (Macaca Thibetana) At Mt. Huangshan, China, Rie Usui, Lori K. Sheeran, Jin-Hua Li, Lixing Sun, Xi Wang, Alexander J. Pritchard, Alexander S. Duvall-Lash, R. Steven Wagner

Biology Faculty Scholarship

Previous studies have reported the negative impacts of tourism on nonhuman primates (NHPs) and tourists and advocated the improvement of tourism management, yet what constitutes good quality management remains unclear. We explored whether rates of macaque aggression and self-directed behaviors (SDBs) differed under the supervision of two park ranger teams at the Valley of the Wild Monkeys (VWM) in Mt. Huangshan, Anhui Province, China. The two ranger teams provisioned and managed a group of macaques on an alternating monthly basis. Monkey, tourist and ranger behaviors were collected from August 16–September 30, 2012. Macaque aggression and SDB rates did not differ …

Historical Demography And Dispersal Patterns In The Eastern Pipistrelle Bat (Perimyotis Subflavus), Alynn M. Martin

Masters Theses

The recent emergence of threats to North American bat conservation has prompted increased population genetics research on high risk species. The eastern pipistrelle bat is affected by both white-nose syndrome and wind turbine mortality. However, little work has been done regarding the population structure and effective population size of this species. Using the HVI region of the mitochondria and eight microsatellite loci, I analyzed male and female structure across the sample range of P. subflavus and estimated the effective population size of their populations. Pairwise F_ST values indicate that there is one panmictic population based on microsatellite data, while …

Movements Of A Juvenile Crowned Eagle (Harpyhaliaetus Coronatus) Tracked By Satellite Telemetry In Central Argentina, Vicente Urios, Maria Pilar Donat-Torres, Marc J. Bechard, Miguel Ferrer

Biology Faculty Publications and Presentations

Background: A juvenile Crowned Eagle was tagged at its nest with a satellite transmitter. The Crowned Eagle (Harpyhaliaetus coronatus) is one of the most unknown raptor species from the American continent. Their current distribution ranges from central Brazil to central Argentina, with a total population of 350–1500 individuals across this large area, being thus largely fragmented.

Results: During the three years of tracking the bird concentrated its movements in a range spanning for 12845 km², but concentrating mainly in four smaller areas accounting for 3073 km². The locations were recorded mainly over shrubland habitats …

Cryptic Diversity And Conservation Of Gopher Frogs Across The Southeastern United States, Stephen C. Richter, Eric M. O’Neill, Schyler O. Nunziata, Andrew Rumments, Emily S. Gustin, Jeanne E. Young, Brian I. Crother

Biological Sciences Faculty and Staff Research

Identifying cryptic biodiversity is fundamental to evolutionary biology and to conservation efforts. This study investigated range-wide genetic diversity of Gopher Frogs, Lithobates capito, across the southeastern United States coastal plain to determine implications for taxonomy and conservation. We collected data for two mtDNA regions in 21 populations to identify genetic structure across the geographic distribution of the species. Based on population genetic, phylogenetic, and genealogical analyses, we recovered three reciprocally monophyletic mtDNA lineages corresponding to mainland coastal plain populations and two lineages within peninsular Florida. Breakpoints for these lineages did not occur in previously identified hotspots of amphibian phylogeographic breaks …

The Neotropical Genus Austrolebias: An Emerging Model Of Annual Killifishes, Nibia Berois, María J. Arezo, Rafael O. De Sá

Biology Faculty Publications

Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life.

Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the …

Inferring Herpetofaunal Distributions And Habitat Preferences For Conservation Planning, Lisa M. Prowant

Master's Theses or Doctor of Nursing Practice

Global climate change is a serious threat to global biodiversity (IPCC, 2001). Due to their limited dispersal ability, reptiles and amphibians might be more vulnerable to rapid climate change than are other taxonomic groups (Gibbons et al., 2000). Herpetofauna in south-central Kansas was sampled from May through August in 2012 and 2013. Seven study sites spanning Meade, Clark, Comanche, and Barber counties were sampled. Drift fence and cover-board traps were arranged in transects at each site to capture reptiles and amphibians. Species were also sampled through surveys on all-terrain vehicles and on foot. Two thousand nine hundred and forty five …

Conspecific Attraction In A Low-Density Population Of A Threatened Songbird, Daniel James Albrecht-Mallinger

Theses and Dissertations

Many organisms use both vegetation structure and social cues in selecting habitats. Many species of songbirds use the presence of breeding conspecifics as a social cue and sign of habitat quality, and can be induced to settle in unoccupied habitats by artificially broadcasting breeding song, a process referred to as “conspecific attraction”. In our study, we tested response to conspecific attraction a low-density population of the threatened Golden-winged Warbler (Vermivora chrysoptera) in Highland County, VA. Response to broadcast song was observed, with a modest increase in mean male abundance at survey points within 250 meters of treatments, and mean abundance …

Population Genetic Analysis Of Astacopsis Gouldi., Aaron Madsen, Dr. Keith Crandall

Journal of Undergraduate Research

Astacopsis gouldi has been known to weigh up to 6 kg, and live for as long as 60 years (Horwitz and Hamr, 1988). However, fishing pressure, as well as habitat destruction and pollution have had detrimental effects on A. gouldi populations. The populations of the species in accessible rivers have declined, as have the number of males reaching sexual maturity. These factors led to the placement of A. gouldi on the endangered species list in 1996 (IUCN, 1996). Conservationists are considering the relocation of crayfish from populations in more remote rivers and streams where the decline in numbers has been …

Phylogeny And Conservation Of The Utah Land Snail Oreohelix Peripherica (Gastropoda: Pulmonata: Camaenidae), Ashley Nelson, Dr. Keith A. Crandall

Journal of Undergraduate Research

The land snail Oreohelix consists of 35 species that are distributed throughout the western United States, southwest Canada and northern Mexico. The majority of these species are endemic to the Great Basin and the Rocky Mountains (Bequaert et al., 1973). Pilsbry (1939) made the last taxonomic revision of the Oreohelix snail in Utah. He described seven species: Oreohelix eurekensis, O. haydeni, O. parawanensis, O. peripherica, O. strigosa, O. subrudis, and O. Yavapai. Traditionally, three subspecies have been ascribed to O. peripherica: O. p. wasatchensis, O. p. newcombi and O. p. weberina, which are distributed in Logan and Ogden Ranger Districts …

Conservation Assessment And Habitat Notes For Three Rare Alabama Crayfishes: Cambarus Cracens, Cambarus Scotti, And Cambarus Unestami, Stephanie L. Kilburn, Christopher A. Taylor, Guenter Schuster

Biological Sciences Faculty and Staff Research

Over seventy percent of the world's freshwater crayfish species are found within the United States, and much of this diversity is concentrated in the southeastern United States. Yet many of these species remain understudied. Of particular interest is the conservation status of these understudied taxa. We conducted fieldwork in 2011 across northeastern Alabama and northwestern Georgia to review the occurrence, habitat, and in sonic cases, local population densities of three crayfish species (Cambarus scotti, C. unestami, and C. cracens) to determine current distributions in relation to historical surveys. All three species occur in flowing small to medium-sized streams with firm …

Grizzly Bear Monitoring By The Heiltsuk People As A Crucible For First Nation Conservation Practice, William G. Housty, Anna Noson, Gerald W. Scoville, John Boulanger, Richard M. Jeo, Chris T. Darimont, Christopher E. Filardi

All Faculty Scholarship for the College of the Sciences

Guided by deeply held cultural values, First Nations in Canada are rapidly regaining legal authority to manage natural resources. We present a research collaboration among academics, tribal government, provincial and federal government, resource managers, conservation practitioners, and community leaders supporting First Nation resource authority and stewardship. First, we present results from a molecular genetics study of grizzly bears inhabiting an important conservation area within the territory of the Heiltsuk First Nation in coastal British Columbia. Noninvasive hair sampling occurred between 2006 and 2009 in the Koeye watershed, a stronghold for grizzly bears, salmon, and Heiltsuk people. Molecular demographic analyses revealed …

The Envenoming Pandemic And The Misguided Views Of Snakes: Developing Sustainable Relationships Between Native Poisonous Snakes Of India And The Citizens Of Maharashtra Through The Use Of The Irula Model., Destiny Villanueva

Animal Science

Due to its vast population and general negative consensus regarding snakes, India is notorious for having more snakebite incidents than any other country. Snakes are simultaneously revered and feared in Indian religion and culture. This stigma is perpetuated through propaganda, family beliefs, and innate fears of snakes.These stigmas are more pronounced within rural areas, such as the region of Mahad within the state of Maharshtra. Envenoming is endemic in these areas, and others like them. The World Health Organization identified envenoming as one of the most neglected tropical diseases of the 21st century (Nature India, 2013). Additionally, both nonvenomous and …

Personhood And Cloning: Modern Applications And Ethics Of Stem Cell And Cloning Technology, Sariah Cottrell Mccarrey

Theses and Dissertations

Within many communities and religions, including the LDS community, there is some controversy surrounding the use of stem cells – particularly embryonic stem cells (ESC). Much of this controversy arises from confusion and misconceptions about what stem cells actually are, where they come from , and when life begins. The theology of the Church of Jesus Christ of Latter-day Saints has interesting implications for the last of these considerations, and it becomes less a question of “when does life begin” and more an exploration of “when does personhood begin” or “when does the spirit enter the body.” With no official …

Probiotic Bioaugmentation Of An Anti-Bd Bacteria, Janthinobacterium Lividum, On The Amphibian, Notophthalmus Viridescens: Transmission Efficacy And Persistence Of The Probiotic On The Host And Non-Target Effects Of Probiotic Addition On Ecosystem Components, Molly Bletz

Masters Theses, 2010-2019

Amphibians worldwide are threatened by the fungal disease chytridiomycosis, caused by the skin pathogen Batrachochytrium dendrobatidis. Mutualistic skin bacteria are a critical element in amphibians’ defenses against chytridiomycosis. Probiotic bioaugmentation of beneficial, anti-Bd bacteria on amphibians is a potential conservation strategies. Outdoor experimental ponds were used to investigate transmission efficacy and persistence of the anti-Bd bacteria, Janthinobacterium lividum, on the amphibian, Notophthalmus viridescens. More specifically, this research investigated whether a short-term individual bath, environmental bioaugmentation, or both are necessary to afford transmission and persistence of J. lividum on N. viridescens. Additionally, this research investigated the effectiveness of these different probiotic …

Factors Influencing Nest Site Selection By Wood Turtles (Glyptemys Insculpta) In An Altered Forest Landscape, Ellery Ruther

Theses & Honors Papers

There have been many studies concerning wood turtle (Glyptemys insculpta) nest site selection, including studies that evaluate nest site conditions when stream sand banks are not available. However, because of the unique landscape at our study site (high gradient, first order streams) and rapidly diminishing wood turtle populations in Virginia, I am evaluating wood turtle nest site selection. Nine physiographic and vegetative characteristics from nest, positive, negative-one and negative-two control locations were evaluated using binomial generalized linear models and then best fit models were chosen using Akaike's Information Criterion (AIC). It was found that in lieu of typical stream …

“Culling The Herd”: Eugenics And The Conservation Movement In The United States, 1900–1940, Garland E. Allen

Biology Faculty Research

While from a late twentieth- and early twenty-first century perspective, the ideologies of eugenics (controlled reproduction to eliminate the genetically unfit and promote the reproduction of the genetically fit) and environmental conservation and preservation, may seem incompatible, they were promoted simultaneously by a number of figures in the progressive era in the decades between 1900 and 1950. Common to the two movements were the desire to preserve the ‘‘best’’ in both the germ plasm of the human population and natural environments (including not only natural resources, but also undisturbed nature preserves such as state and national parks and forests). In …

Avifauna Of The Mache Chindul Ecological Reserve, Northwest Ecuador, Luis Carrasco, Karl S. Berg, Jennifer Litz, Andrew Cook, Jordan Karubian

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

We report on the avifauna of the 120,000 ha Mache Chindul Ecological Reserve (REMACH), northwest Ecuador. The study area is located in a poorly studied transition zone between three major Neotropical biogeographic regions-the Chocó, Tumbesian, and Tropical Andes-each of which contains exceptional diversity and endemism in birds and other organisms. We collected data from 1998–99 and 2004–11 from the Bilsa Biological Station (a 3500 ha private reserve) and several farms, forest fragments, and communities distributed across the central portion of REMACH using observations (aural and visual), audio recordings, mist netting, point counts and photographs. We recorded 360 species of bird …

Likely Successors Of Ash Species In Response To The Emerald Ash Borer In Ohio Forests, Brian Michael Good

Browse all Theses and Dissertations

Invasive species have the capability to alter landscapes and change the composition of a forest in a very short time. The recent invasive pest, Agrilus planipennis, emerald ash borer, was unintentionally introduced to the United States via ship route to Michigan. The pest attacks and kills all five native ash species in Ohio. This study focused on an area in west central Ohio not yet affected by the borer. Ash centered plots were used to record all species and sizes (diameter at breast height) within a 5m radius of a central ash tree. Plots ranged in topography and all five …

The Influence Of Different Cover Types On American Robin Nest Success In Organic Agroecosystems, John E. Quinn, Amy Oden, James R. Brandle

Biology Publications

There are many opportunities for biodiversity conservation in organic farm systems. Successful and sustainable conservation efforts in organic systems, however, need to measure appropriate outcomes. In particular, data are needed on the breeding success of associated wildlife species. We measured nesting success of the American Robin (Turdus migratorius) in woodlands embedded within eight organic farms in eastern Nebraska. We modeled daily nest survival rate to identify land use and land cover patterns that optimize conservation of birds in organic farm systems. The percentage of a crop in the fields adjacent to linear woodlands best predicted daily survival rate. …

High Prevalence Of The Amphibian Chytrid Fungus (Batrachochytrium Dendrobatidis) Across Multiple Taxa And Localities In The Highlands Of Ethiopia, David J. Gower, Thomas M. Doherty-Bone, Roman K. Aberra, Abebe Mengistu, Silvia Schwaller, Michele Menegon, Rafael O. De Sá, Samy A. Saber, Andrew A. Cunningham, Simon P. Loader

Biology Faculty Publications

Surveys of the potentially lethal amphibian chytrid fungus (Batrachochytrium dendrobatidis - Bd) in Africa are patchy, especially in some regions of high species endemicity. We present results of the first Bd surveys of wild amphibians in Ethiopia, for two upland regions on either side of the Rift Valley: the Bale Mountains and the Kaffa region. Surveys were opportunistic so that robust interpretation of the data is limited. Utilizing diagnostic qPCR assays, 51 out of 120 frogs (14 species in 10 genera) tested positive for Bd at altitudes of 1,620–3,225 m, across all genera and species, and all but …