Biology Commons^™

Plasticity In Response To Temperature Magnitude And Variation---From Life History To Thermal Tolerance And Coloration, Austin Rex Hoffman

University of the Pacific Theses and Dissertations

Warming associated with climate change has many direct and downstream effects on animals. For example, warmer developmental temperatures can improve heat tolerance and reduce insect melanization, which is related to coloration, thermoregulation, immunity, desiccation resistance, and potentially life-history traits, such as investment into reproduction and dispersal. Increased temperature variation is also a feature of climate change, and it may have a larger impact on animals than warming. However, I lack insight into the combined effects of temperature magnitude and variability on important traits of life history, thermal tolerance, and coloration. Thus, I integrated temperature variation into thermal performance using a …

Linking Microbial Community Assembly In Flowers With Function Under Diverse Environmental Conditions: A Case Study Involving Erwinia Amylovora, Christopher Skylar Mcdaniel

All Graduate Theses and Dissertations, Fall 2023 to Present

Fire blight, a devastating disease of pome fruit trees caused by the bacterium Erwinia amylovora, can cause millions of dollars in losses for producers each year around the globe. Management approaches that involve use of antibiotics, such as streptomycin, can be effective; although concerns exist over pollinator and crop health when using them regularly. Recently, there have been developments that allow for biological agents such as microbes to curtail fire blight infection. These agents work by competing with Erwinia for resources or space, producing antibacterial compounds, or even killing Erwinia cells on contact. Unfortunately, these agents do not yet …

Interactive Effects Of Increased Nestbox Temperature And Vitamin E On Nestling Growth Are Attenuated By Plasticity In Female Incubation Effort, Paige A. Duncan, Ashley M. Tauber, Scott K. Sakaluk, Charles F. Thompson

Faculty Publications – Biological Sciences

In recent years, temperatures have increased globally, and nestlings of many bird species are likely regularly exposed to increased temperatures both pre- and post-natally. Even small increases in nest temperature during incubation affect offspring growth and survival in a variety of species, one cause of which is thought to be increased production of pro-oxidants in embryos and nestlings. Defences marshalled in response to this oxidative stress could, in turn, result in trade-offs that lead to reduced survival or growth. If so, any downstream negative effects on nestlings of increased ambient temperatures during incubation could be counteracted by increasing their antioxidant …

Reimagining Large River Management Using The Resist–Accept–Direct (Rad) Framework In The Upper Mississippi River, Nicole K. Ward, Abigail J. Lynch, Erik A. Beever, Joshua Booker, Kristen L. Bouska, Holly Embke, Jeffrey N. Houser, John F. Kocik, David J. Lawrence, Mary Grace Lemon, Doug Limpinsel, Madeline R. Magee, Bryan M. Maitland, Owen Mckenna, Andrew Meier, John M. Morton, Jeffrey D. Muehlbauer, Robert Newman, Devon C. Oliver, Heidi M. Rantala, Greg G. Sass, Aaron Shultz, Laura M. Thompson, Jennifer L. Wilkening

Biology Faculty Publications

Background Large-river decision-makers are charged with maintaining diverse ecosystem services through unprecedented social-ecological transformations as climate change and other global stressors intensify. The interconnected, dendritic habitats of rivers, which often demarcate jurisdictional boundaries, generate complex management challenges. Here, we explore how the Resist–Accept–Direct (RAD) framework may enhance large-river management by promoting coordinated and deliberate responses to social-ecological trajectories of change. The RAD framework identifies the full decision space of potential management approaches, wherein managers may resist change to maintain historical conditions, accept change toward different conditions, or direct change to a specified future with novel conditions. In the Upper Mississippi …

Warmer Temperature Overrides The Effects Of Antidepressants On Amphibian Metamorphosis And Behavior, Peter Fong, Aylin Doganoglu, Eleanor Sandt, Sierra Turbeville

Biology Faculty Publications

Climate change can exacerbate the effects of environmental pollutants on aquatic organisms. Pollutants such as human antidepressants released from wastewater treatment plants have been shown to impact life-history traits of amphibians. We exposed tadpoles of the wood frog Lithobates sylvaticus to two temperatures (20°C and 25°C) and two antidepressants (fluoxetine and venlafaxine), and measured timing of metamorphosis, mass at metamorphosis, and two behaviors (startle response and percent motionless). Antidepressants significantly shortened time to metamorphosis at 20°C, but not at 25°C. At 25°C, tadpoles metamorphosed significantly faster than those at 20°C independent of antidepressant exposure. Venlafax- ine reduced body mass at …

The Coastal Monitor: Vol. 10 No. 2, John Tanacredi Ph.D.

The Coastal Monitor

Stephen J. Gould’s prophetic piece, “The Golden Rule: A Proper Scale for Our Environmental Crisis”, noted that, “Patience enjoys a long pedigree of favor”, which he elaborated, “usually involves a deep understanding of the fundamental principle… rarely grasped in daily life – the effects of scale.” Scientists observe changes incessantly, in dimensions and time, from microscopic conditions of cellular biology to the inconceivable distances of galaxies and their influences on Earth.

Genomic Underpinning Of Drought-Associated Phenotypes In A Keystone Shrub Species Of Western North America, Carlos Dave Contreras Dumaguit

Boise State University Theses and Dissertations

Anthropogenic climate warming and habitat loss threaten species and ecosystem sustainability. Given this, it is urgent to determine whether populations can adapt at a rate sufficient to combat climate change or if human intervention is needed to preserve community ecosystem health. Assessing whether populations could adapt includes inferring whether key phenotypic traits associated to abiotic tolerance are under genetic control and therefore heritable. This thesis focused on the imperiled western North American sagebrush steppe and its widespread eponymous keystone species Artemisia tridentata, (common name, big sagebrush). To determine the adaptive capacity of any population, standing variation for phenotypic traits across …

Structural Diversity And Stress Regulation Of The Plant Immunity-Associated Calmodulin-Binding Protein 60 (Cbp60) Family Of Transcription Factors In Solanum Lycopersicum (Tomato), Vanessa Shivnauth, Sonya Pretheepkumar, Eric J. R. Marchetta, Christina A. M. Rossi, Keaun Amani, Christian Castroverde

Biology Faculty Publications

Cellular signaling generates calcium (Ca2+) ions, which are ubiquitous secondary messengers decoded by calcium-dependent protein kinases, calcineurins, calreticulin, calmodulins (CAMs), and CAM-binding proteins. Previous studies in the model plant Arabidopsis thaliana have shown the critical roles of the CAM-BINDING PROTEIN 60 (CBP60) protein family in plant growth, stress responses, and immunity. Certain CBP60 factors can regulate plant immune responses, like pattern-triggered immunity, effector-triggered immunity, and synthesis of major plant immune-activating metabolites salicylic acid (SA) and N-hydroxypipecolic acid (NHP). Although homologous CBP60 sequences have been identified in the plant kingdom, their function and regulation in most species remain unclear. In …

Shower Thoughts: Why Scientists Should Spend More Time In The Rain, John T. Van Stan Ii, Scott T. Allen, Douglas P. Aubrey, Z. Carter Berry, Matthew Biddick, Miriam A.M.J. Coenders-Gerrits, Paolo Giordani, Sybil G. Gotsch, Ethan D. Gutmann, Yakov Kuzyakov, Donát Magyar, Valentina S.A. Mella, Kevin E. Mueller, Alexandra G. Ponette-González, Philipp Porada, Carla E. Rosenfeld, Jack Simmons

Biological, Geological, and Environmental Faculty Publications

Stormwater is a vital resource and dynamic driver of terrestrial ecosystem processes. However, processes controlling interactions during and shortly after storms are often poorly seen and poorly sensed when direct observations are substituted with technological ones. We discuss how human observations complement technological ones and the benefits of scientists spending more time in the storm. Human observation can reveal ephemeral storm-related phenomena such as biogeochemical hot moments, organismal responses, and sedimentary processes that can then be explored in greater resolution using sensors and virtual experiments. Storm-related phenomena trigger lasting, oversized impacts on hydrologic and biogeochemical processes, organismal traits or functions, …

Illuminating The Drivers Of Genomic Diversification In Lamprologine Cichlids Of The Lower Congo River, Naoko P. Kurata

Dissertations, Theses, and Capstone Projects

Freshwater fishes are extraordinarily diverse, considering their available habitats represent a tiny proportion of the earth’s surface. Rivers connect heterogeneous habitats in a linear form and provide excellent simplified models to understand how aquatic biodiversity evolves. In particular, the lower Congo River (LCR) in west Central Africa consists of a dynamic hydroscape exhibiting extraordinary aquatic biodiversity, endemicity, and morphological and ecological specialization. This system is thus an excellent natural laboratory for understanding complex speciation and population diversification processes. In my research, I explore various drivers of diversification, and adaptive evolution in rheophilic lamprologine cichlids endemic to the LCR, including Lamprologus …

Effects Of Climate Change On Human Health, Sara El Houzaly, Richa Gupta

Publications and Research

The effects of climate change are evident worldwide as average global land and air temperatures have been rising, glaciers and ice sheets are shrinking with the concomitant rise in sea levels, extreme weather events have become more frequent, and oceans are warming and acidifying. Humanity is facing a big environmental challenge which not only impacts our habitat but will also have ramifications on our health. The present review describes a detailed examination of the scientific evidence proving the relationship between climate change and various fatal human diseases in different geographical regions. Our findings indicate that variations in the patterns of …

Understanding Context Dependent Responses To Climate Change In Arizona Tiger Salamanders (Ambystoma Mavortium Nebulosum), Kentrell Richardson

Masters Theses, 2020-current

Future emissions scenarios project climate change to increase average global temperatures by at least two ℃ in the next 50 years resulting in changes in local climate and causing increased variability within microclimates. Ectotherms are especially sensitive to climate change due to their dependence on environmental temperatures to regulate physiological functions. Changes in temperature are likely to impact thermally cued processes within amphibians and result in changes in variable magnitudes and directions within local populations.

Salamanders were placed in cups and partially submerged in a water bath and heated at a rate of ~0.27℃/ minute. Once salamanders were unable to …

Relationships Between Vector Mosquitoes And Climate Change Derived From Long Term Ecological Data In The United States, Nicholas Scott

Honors Program Theses and Projects

Climate change has significant ecological and societal consequences as evident from the past few decades. It has had a large impact on many species, including vector mosquitoes. Although how climate change impacts mosquitoes of the tropical world has been explored, temperate areas remain inadequately studied. Therefore, the medical and healthcare sectors are underprepared for treating mosquito-borne diseases (EEE and Western Nile virus). Based on a long-term ecological dataset covering the past ~10 years across 45 sites, we streamlined, processed, and subsequently analyzed data by building statistical models to understand changes among mosquito populations in the US in response to climate …

Hawk Mountain Raptor Migration Phenology’S Relation To Weather, Eric Burgos

Computer Science and Information Technology Faculty

We have been studying year-round raptor migration phenology across the United States and North America for multiple decades now. Hawk Mountain Sanctuary’s Autumn migration hawk count began in 1934 and is the longest running raptor migration count in the world. A decline in total raptor counts passing through Hawk Mountain’s North Lookout is well documented and much research has already been done in what could be the main causes for this decrease in counts year-over-year. We know that cold front passages have long been associated with autumnal migration in northeastern North America. Using updated analysis techniques, we examined 60 years’ …

The Effects Of Recent Climate Change On Spring Phenology, With A Special Focus On Patterns Of Bee Foraging, Michael Stemkovski

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The date on which plants flower and on which bees begin to pollinate varies year-to-year depending on differences in weather. This seasonal timing is known as phenology, and it is already clear that climate change has pushed the spring phenology of many species earlier by increasing temperatures. This is particularly clear in flowering plants, but studying how and why the phenology of pollinators is shifting is more difficult. Most flowering plants rely on pollinators such as bees for their reproduction, and most bees rely on flowers for their sustenance, so bee and flower phenology has to overlap for the crucial …

Are Rising Seas Pushing Ghost Crabs Out Of Their Comfort Zone?, Finn Gillette

Honors Theses

Ghost crabs (Ocypode quadrata) can be found on sandy beaches bordering the western Atlantic Ocean. These semiterrestrial crustaceans are often found between the swash zone and the dunes on beaches. Dunes are critical refuges for ghost crabs during storms and extreme tide events. This makes them a useful indicator species for monitoring the effects of global warming-induced sea level rise on beach biota, as their distribution patterns among beach zones may correlate with shifts found in other species. Beach surveys conducted from 2015 onward assessed the population density of ghost crabs on beaches of Horry and Georgetown counties …

Evidence Of Continuing Downward Trends In American Kestrel Populations And Recommendations For Research Into Causal Factors, David M. Bird, John A. Smallwood

Department of Biology Faculty Scholarship and Creative Works

We analyzed long-term datasets from nest box programs, Breeding Bird Surveys run by the US Geological Survey, Christmas Bird Counts run by the National Audubon Society, and counts from two key fall migration watch sites, Hawk Mountain Sanctuary and Cape May Hawkwatch. We found that populations of American Kestrels (Falco sparverius) in North America are generally still declining, albeit with some caveats. Some populations are actually increasing, while others are remaining stable. Overall, the magnitude of annual change appears to be decreasing slightly during recent years. To understand potential causes of the decline, we recommend the following courses of action …

The Coastal Monitor: Vol. 10 No. 1, John Tanacredi Ph.D.

The Coastal Monitor

New Year’s Day has always been, for me, a time to reflect and project into the near future. Nature’s influence on us all certainly tops my listing with several environmental concerns. For example, the frequency and intensity of hurricanes to Long Island. A decade has passed since Superstorm Sandy re-opened the “Old Inlet” on Long Island which now has mostly naturally closed. So, the new year immediately prompts me to assess the previous year’s Hurricane Ian, a Category 4 system, with winds exceeding 150 mph, which had considerable impact in Florida, and then proceeded north resulting in over 2 inches …

Analysis Of Hawk Mountain Wind Speed To Raptor Count Trends From 1976 Through 2021, Dale E. Parson

Computer Science and Information Technology Faculty

This analysis of summer 2023 is a sequel to the summer 2022 Analysis of Hawk Mountain Sanctuary Observation Data from 1976 through 2021, also available as a web page through end of 2024 here. A presentation of that and subsequent analysis presented at Kutztown University in November 2022 and to Hawk Mountain researchers in January 2023 is available as PDF slides here and also on the web through 2024 here. This work was funded by a Kutztown University Research Grant for spring 2022 through summer 2023. Analytical use of these data proceeded through a subset of projects in three courses …

Predicting The Impact Of Climate Change On The Distribution Of Rhipicephalus Sanguineus In The Americas, Marcos Sánchez Pérez, Teresa Patricia Feria-Arroyo, Crystian Sadiel Venegas Barrera, Carolina Sosa-Gutiérrez, Javier Torres, Katherine A. Brown, Guadalupe Gordillo Pérez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Climate change may influence the incidence of infectious diseases including those transmitted by ticks. Rhipicephalus sanguineus complex has a worldwide distribution and transmits Rickettsial infections that could cause high mortality rates if untreated. We assessed the potential effects of climate change on the distribution of R. sanguineus in the Americas in 2050 and 2070 using the general circulation model CanESM5 and two shared socioeconomic pathways (SSPs), SSP2-4.5 (moderate emissions) and SSP2-8.5 (high emissions). A total of 355 occurrence points of R. sanguineus and eight uncorrelated bioclimatic variables were entered into a maximum entropy algorithm (MaxEnt) to produce 50 replicates per …

Six Decades Of North American Bird Banding Records Reveal Plasticity In Migration Phenology, Kyle G. Horton, Sara R. Morris, Benjamin M. Van Doren, Kristen M. Covino

Biology Faculty Works

1. The timing of avian migration has evolved to exploit critical seasonal resources, yet plasticity within phenological responses may allow adjustments to interannual resource phenology. The diversity of migratory species and changes in underlying resources in response to climate change make it challenging to generalize these relationships.
2. We use bird banding records during spring and fall migration from across North America to examine macroscale phenological responses to interannual fluctuations in temperature and long-term annual trends in phenology.
3. In total, we examine 19 species of North American wood warblers (family Parulidae), summarizing migration timing from 2,826,588 banded birds from 1961 to 2018 …

Plant Species’ Capacity For Range Shifts At The Habitat And Geographic Scales: A Trade-Off-Based Framework, Bailey H. Mcnichol, Sabrina E. Russo

School of Biological Sciences: Faculty Publications

Climate change is causing rapid shifts in the abiotic and biotic environmental conditions experienced by plant populations, but we lack generalizable frameworks for predicting the consequences for species. These changes may cause individuals to become poorly matched to their environments, potentially inducing shifts in the distributions of populations and altering species’ habitat and geographic ranges. We present a trade-off-based framework for understanding and predicting whether plant species may undergo range shifts, based on ecological strategies defined by functional trait variation. We define a species’ capacity for undergoing range shifts as the product of its colonization ability and the ability to …

Does Bergmann’S Rule Apply To North American Birds In The Context Of Climate Change?, Peridot Derrin Galloway

Student Theses and Dissertations

Over the past half century, birds have changed, including in their morphology. Biogeographic rules including Bergmann’s and Allen’s rules have been used to try to elucidate morphological changes; however, there has been dispute over the rules’ applicability. Thus, I aimed to identify 1) morphometric trends over time of 15 North American bird species, including eastern bluebirds (Sialia sialis); 2) if these morphometric trends follow Bergmann’s rule; and 3) if the observed morphometric trends are associated with life history and other traits, as well as climatic variables (e.g., average, maximum and minimum temperatures, and total precipitation). Using short- and long-term morphological …

Molecular Regulation Of The Salicylic Acid Hormone Pathway In Plants Under Changing Environmental Conditions, Christina A. M. Rossi, Eric J. R. Marchetta, Jong Hum Kim, Christian Castroverde

Biology Faculty Publications

Salicylic acid (SA) is a central plant hormone mediating immunity, growth, and development. Recently, studies have highlighted the sensitivity of the SA pathway to changing climatic factors and the plant microbiome. Here we summarize organizing principles and themes in the regulation of SA biosynthesis, signaling, and metabolism by changing abiotic/biotic environments, focusing on molecular nodes governing SA pathway vulnerability or resilience. We especially highlight advances in the thermosensitive mechanisms underpinning SA-mediated immunity, including differential regulation of key transcription factors (e.g., CAMTAs, CBP60g, SARD1, bHLH059), selective protein–protein interactions of the SA receptor NPR1, and dynamic phase separation of the recently identified …

Changes In The Microbiome Of The Sea Anemone Exaiptasia Diaphana During Bleaching From Short-Term Thermal Elevation, Jamison R. Sydnor, Jamie Lopez, Gordon V. Wolfe, Lisa Ott, Cawa Tran

Biology: Faculty Scholarship

We examined the response of microbial communities in the model sea anemone Exaiptasia diaphana (Aiptasia) to short-term thermal elevation. Through 16S rRNA gene sequencing, we characterized the microbiomes of symbiotic (with algal symbionts) and aposymbiotic (bleached) anemones under ambient (27°C) and heat-stressed (34°C) conditions for 8-10 days, using both replicated endpoint and non-replicated time-course approaches. Consistent with prior studies, we observed a stable abundance of bacteria from the families Alteromonadaceae and Rhodobacteraceae, though with wide variation among individual anemones. We observed that symbiotic state conferred a larger impact on the microbiome than heat stress, implying the microbiome may play a …

What Kills The Virtually Immortal Palms Of The Florida Scrub?, Warren G. Abrahamson Ii

Faculty Journal Articles

Premise: Life span varies greatly across plants, with some species being capable of extreme longevity. Yet even long‐lived individuals are susceptible to climatic events, fire, and other challenges. We examined rare mortality events and their causes in two long‐lived palmettos over four decades. Methods: We monitored the survival of the clonal Serenoa repens and non‐clonal, Florida‐endemic Sabal etonia from 1981 to 2022 in four habitats along an elevational gradient within the globally imperiled Florida scrub ecosystem. We considered several challenges to palmetto survival, including extreme fires, shading due to lack of fire, droughts, periods of high precipitation, and possible pathogens. …

Ascophyllum Nodosum Seaweed Extract Application As A Possible Mechanism For Mitigating Salt Stress In Soybeans (Glycine Max), Elena Hoang

Honors Program Theses

Soil salinity, an abiotic stressor associated with climate change effects, inhibits the normal growth and development of sensitive crop species. The excessive accumulation of salt ions in plant tissue induces oxidative stress, which is characterized by an increased production of reactive oxygen species (ROS) damaging plant organelles and disrupting normal metabolic functions. Seaweed extracts (SWE) may be a solution for mitigating the effects of salt stress on crop yield and quality, as they introduce bioactive ingredients that are able to regulate gene expression and enhance natural physiological processes in plants. However, the positive benefits of SWE applications differ between plant …

Exploring The Metabolic Capabilities And Biotransformation Potential Of Environmental Lactococcus Strains, Desirée Román Naranjo

Theses

The aim of this thesis is to characterize environmental Lactococcus strains to identify different and diverse metabolic capabilities that could be applied to microbial biotransformation, defined as the conversion of a cheap/waste substrate into a value-added product. Due to the increased amounts of food processing waste generated worldwide and the impact of climate change, new sustainable approaches are necessary to contribute to waste valorization and the circular bioeconomy. We ask to what extent and in what ways environment isolated Lactococcus strains could contribute to food biotransformation by metabolizing a different range of substrates. We do so to further understand and …

Natural Variation In Temperature-Modulated Immunity To Pseudomonas Syringae Pv. Tomato (Pst Dc3000) In Arabidopsis Thaliana Plants, Christina A. M. Rossi

Theses and Dissertations (Comprehensive)

Studies conducted on the model plant-pathogen system Arabidopsis thaliana-Pseudomonas syringae pv. tomato (Pst) showed that elevated temperature suppresses the pathogen-induced production of salicylic acid (SA), which is a key plant defence hormone. This increased host vulnerability at higher temperatures is due to downregulated expression of CALMODULIN BINDING PROTEIN 60-LIKE G (CBP60g) and SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1), which encode master regulators of SA production. Collectively, these previous studies only focused on one natural accession of Arabidopsis called Columbia-0 (Col-0). However, the intraspecific variation in Arabidopsis immunity phenotypes under elevated temperature remains unknown. To fill this critical knowledge gap, my …

Multiple Interacting Stressors Influence Development, Growth, And Morphology Of Pacific Chorus Frog (Pseudacris Regilla) Larvae, Abby Dalke, Allie M. Erickson, Bailey R. Tasker, Skylar Riley, Paul Hurst, Sarah Cooney, Scott A. Griffith, Betsy A. Bancroft

Biology Faculty Scholarship

Freshwater ecosystems are threatened by climate change and invasive species. Amphibians are important members of freshwater communities and are susceptible to negative effects of climate change and invasion. Furthermore, both climate change and invasion can influence density of amphibian larvae at the microhabitat scale because of larval clustering. To understand the effects of climate change and invasion on Pacific Chorus Frog Pseudacris regilla (Baird and Girard, 1852) larvae, a 2 × 2 × 2 factorial experiment was carried out with a climate treatment (future/historical; simulated as changes in both temperature and hydroperiod), indirect exposure to the invasive Brook Stickleback Culaea …