Biology Commons^™

Linking Bacterioplankton Community Structures To Environmental State Variables And Phytoplankton Assemblages In Two South Carolina Salt Marsh Estuaries, Wes Johnson, Alan J. Lewitus, Madilyn Fletcher

Faculty Publications

Microorganisms are among the most important organisms to the ecology of salt marsh estuaries; however, fundamental questions regarding their distribution, environmental controls, and interactions with phytoplankton remain unanswered. We used denaturing gradient gel electrophoresis (DGGE) of bacterial rRNA genes and high performance liquid chromatography (HPLC) of phytoplankton photopigments to characterize planktonic communities from the Ashepoo, Combahee, and Edisto (ACE) Basin and North Inlet (NI) estuaries on the South Carolina coast, USA. Multivariate comparisons of the planktonic community profiles revealed that the 2 estuaries supported distinct bacterial communities. Furthermore, bacterial communities in both systems were partitioned into separate particle-associated (PA) and …

Microbial Growth And Biofilm Formation In Geologic Media Is Detected With Complex Conductivity Measurements, Caroline A. Davis, Estella A. Atekwana, Eliot A. Atekwana, Lee D. Slater, Silvia Rossbach, Melanie R. Mormile

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Complex conductivity measurements (0.1-1000 Hz) were obtained from biostimulated sand-packed columns to investigate the effect of microbial growth and biofilm formation on the electrical properties of porous media. Microbial growth was verified by direct microbial counts, pH measurements, and environmental scanning electron microscope imaging. Peaks in imaginary (interfacial) conductivity in the biostimulated columns were coincident with peaks in the microbial cell concentrations extracted from sands. However, the real conductivity component showed no discernible relationship to microbial cell concentration. We suggest that the observed dynamic changes in the imaginary conductivity (σ″) arise from the growth and attachment of microbial cells and …

Kinetics And Relative Importance Of Phosphorolytic And Hydrolytic Cleavage Of Cellodextrins And Cellobiose In Cell Extracts Of Clostridium Thermocellum, Yie.-Heng P. Zhang, Lee R. Lynd

Dartmouth Scholarship

Rates of phosphorolytic cleavage of 􏰁-glucan substrates were determined for cell extracts from Clostridium thermocellum ATCC 27405 and were compared to rates of hydrolytic cleavage. Reactions with cellopentaose and cellobiose were evaluated for both cellulose (Avicel)- and cellobiose-grown cultures, with more limited data also obtained for cellotetraose. To measure the reaction rate in the chain-shortening direction at elevated temper- atures, an assay protocol was developed featuring discrete sampling at 60°C followed by subsequent analysis of reaction products (glucose and glucose-1-phosphate) at 35°C. Calculated rates of phosphorolytic cleavage for cell extract from Avicel-grown cells exceeded rates of hydrolytic cleavage by >20-fold …

Antibacterial Activities Of Constituents From Isolona Cauliflora And Cleistochlamys Kirkii, Ac Odebode, Sjm Mdachi, Cc Joseph, Bn Irungu

Tanzania Journal of Science

Antibacterial activities of caulindole D, a mixture of caulindole E and F, pinocembrin and an oxyheptanoid (cleistenolide), obtained from stem barks of Isolona cauliflora and Cleistochlamys kirkii, on Staphylococcus aureus and Pseudomonas phaseolicola were determined. An in vitro assay test by paper disc method showed that the caulindole D, E and F from Isolona cauliflora produced no inhibition zone on both bacteria pathogens at 100-200 ppm while cleistochlamic acid from C. kirkii showed weak to moderate inhibition zone at 100-200 ppm. At concentration above 200 ppm, the bacteria pathogens were inhibited by all the compounds isolated from the plant extracts. …

Size Doesn't Matter: Microbial Selection Experiments Address Ecological Phenomena, Michael Feldgarden, Daniel M. Stoebel, Dustin Brisson, Daniel E. Dykhuizen

All HMC Faculty Publications and Research

Experimental evolution is relevant to ecology because it can connect physiology, and in particular metabolism, to questions in ecology. The investigation of the linkage between the environment and the evolution of metabolism is tractable because these experiments manipulate a very simple environment to produce predictable evolutionary outcomes. In doing so, microbial selection experiments can examine the causal elements of natural selection: how specific traits in varying environments will yield different fitnesses. Here, we review the methodology of microbial evolution experiments and address three issues that are relevant to ecologists: genotype-by-environment interactions, ecological diversification due to specialization, and negative frequency-dependent selection. …

Trophic Cascades, Nutrients, And Lake Productivity: Whole-Lake Experiments, Stephen R. Carpenter, Jonathan J. Cole, James R. Hodgson, James F. Kitchell, Michael L. Pace, Darren Bade, Kathryn L. Cottingham

Dartmouth Scholarship

Responses of zooplankton, pelagic primary producers, planktonic bacteria, and CO2 exchange with the atmosphere were measured in four lakes with contrasting food webs under a range of nutrient enrichments during a seven-year period. Prior to enrichment, food webs were manipulated to create contrasts between piscivore dominance and planktivore dominance. Nutrient enrichments of inorganic nitrogen and phosphorus exhibited ratios of N:P > 17:1, by atoms, to maintain P limitation. An unmanipulated reference lake, Paul Lake, revealed baseline variability but showed no trends that could confound the interpretation of changes in the nearby manipulated lakes. Herbivorous zooplankton of West Long Lake (piscivorous fishes) …

Variations In Bacterial Community Structure During A Dinoflagellate Bloom Analyzed By Dgge And 16s Rdna Sequencing, Laura B. Fandino, Lasse Riemann, Grieg F. Steward, Richard A. Long, Farooq Azam

Faculty Publications

The relationship between bacterial 16S rRNA gene composition and carbon metabolism was analyzed during an intense dinoflagellate bloom off the Southern California coast during the spring of 1997. Bacterial numbers and rate processes, chlorophyll a, and the dissolved and particulate organic matter pools were measured during the bloom to provide a framework within which to assess bacterial community composition. Free bacteria were numerically dominant, generally comprising >90% of the total, and were responsible for >70% of bacterial production. Attached bacteria had higher cell-specific growth rates than free bacteria (range = 0.5 to 15.1 and 0.7 to 2.5 d^{-1 …}

Tick Immunity To Microbial Infections: Control Of Representative Bacteria In The Hard Tick Dermacentor Variabilis (Acari: Ixodidae), Robert Johns, Shane Ceraul, Daniel E. Sonenshine, Wayne L. Hynes

Biological Sciences Faculty Publications

No abstract provided.

Communities Of Cloacal Bacteria In Tree Swallow Families, Michael P. Lombardo, Patrick A. Thorpe, R. Cichewicz, M. Henshaw, C. Millard, C. Steen, T. K. Zeller

Peer Reviewed Publications

Our aim in this study was to survey the communities of bacteria found in the cloacae of adult and nestling Tree Swallows (Tachycineta bicolor), determine if there were familial patterns of prevalence, and determine if there were relationships between bacteria loads and nestling size when 12 days old and fledging success.

Community Metabolism And Nutrient Cycling In The Mississippi River Plume: Evidence For Intense Nitrification At Intermediate Salinities, Joseph D. Pakulski, Ronald Benner, Rainer Amon, Brian Eadie, Terry Whitledge

Faculty Publications

Community respiration, net nutrient fluxes and heterotrophic bacterial production were investigated in the Mississippi River (USA) plume during May 1992 using dark bottle incubations of unfiltered water. Highest rates of community O₂ consumption and dissolved inorganic carbon regeneration were observed at intermediate (10 to 27%₀) plume salinities. Plume surface 0₂ consumption rates were 2- to 4-fold greater than rates reported previously during the summer and winter. Heterotrophic bacterial production ([³H]-leucine incorporation) was also highest at intermediate salinities and 2- to 4-fold greater than rates reported from other seasons. Net regeneration of NH₄^{+ …}

In Vitro Activity Of Four Fluoroquinolones On Selected Bacteria, Sheryl L. Pullen

University of the Pacific Theses and Dissertations

In 1990-1991, in a national surveillance study, and in 1991-1992, in a followup study, both by Thornsberry et al. (1993), ciprofloxacin data from various geographical and demographical institutions were collected. Several species of bacteria have shown resistance to ciprofloxacin and norfloxacin, but the degree of resistance to these drugs has not been reported for the Stockton area. To determine the extent of this resistance, Dameron Hospital antibiograms generated from 1990 to 1994 were reviewed and compared. Results of the comparison show that susceptibility among the Gram-negative isolates, with the exception of Providencia stuartii, Acinetobacter lwoffi, and to a lesser extent …

Mechanisms For Soil Moisture Effects On Activity Of Nitrifying Bacteria, John M. Stark, M. K. Firestone

Biology Faculty Publications

Moisture may limit microbial activity in a wide range of environments including salt water, food, wood, biofilms, and soils. Low water availability can inhibit microbial activity by lowering intracellular water potential and thus reducing hydration and activity of enzymes. In solid matrices, low water content may also reduce microbial activity by restricting substrate supply. As pores within solid matrices drain and water films coating surfaces become thinner, diffusion path lengths become more tortuous, and the rate of substrate diffusion to microbial cells declines. We used two independent techniques to evaluate the relative importance of cytoplasmic dehydration versus diffusional limitations in …

Longitudinal Dynamics Of Seston Concentration And Composition In A Lake Outlet Stream, Yvonne Vadeboncoeur

Biological Sciences Faculty Publications

Concentrations of suspended particulate organic carbon (POC), dissolved organic carbon, bacteria, and chlorophyll a were measured in a lake outlet in western Montana, USA. Seven sites within the first 3 km downstream from the lake were sampled over 14 mo. Downstream change in concentration of each variable was tested for fit to a power function (C=aD^b). Downstream changes in POC, bacteria, and chlorophyll a, sometimes fit a power function, and the value of the exponent b was positively correlated with discharge. At low discharge, a downstream decline in lake algae was accompanied by an increase in stream algae. …

Activity And Distribution Of Attached Bacteria In Chesapeake Bay, Peter Griffith, Fuh-Kwo Shiah, Kathryn Gloersen, Hugh W. Ducklow, Madilyn Fletcher

Faculty Publications

The purpose of this study was to further our understanding of the role of particle-associated bacteria in phytoplankton degradation in the Chesapeake Bay, USA, and to identify environmental parameters that control production by free and particle-associated bacteria. Surface and bottom waters at 10 stations along the length of the Bay were sampled over a 2 yr period. Samples were analyzed for temperature, salinity, chlorophyll, phaeophytin, particulate protein, thymidine incorporation (an estimate of bacterial growth rate), and bacterial total direct counts. Results demonstrated that freeliving bacteria were responsible for most of the total bacterial production, which was correlated with temperature and …

The Primary Structure Of A Fungal Chitin Deacetylase Reveals The Function For Two Bacterial Gene Products., Dimitris Kafetzopoulos, George Thireos, John N. Vournakis, Vassilis Bouriotis

Dartmouth Scholarship

Chitin deacetylase (EC 3.5.1.41) hydrolyzes the N-acetamido groups of N-acetyl-D-glucosamine residues in chitin. A cDNA to the Mucor rouxii mRNA encoding chitin deacetylase was isolated, characterized, and sequenced. Protein sequence comparisons revealed significant similarities of the fungal chitin deacetylase to rhizobial nodB proteins and to an uncharacterized protein encoded by a Bacillus stearothermophilus open reading frame. These data suggest the functional homology of these evolutionarily distant proteins. NodB is a chitooligosaccharide deacetylase essential for the biosynthesis of the bacterial nodulation signals, termed Nod factors. The observed similarity of chitin deacetylase to the B. stearothermophilus gene product suggests that this gene …

Microbiological Immunocytochemistry: A Review Of Current Trends And Applications, Julian E. Beesley

Scanning Microscopy

It has been considered worthwhile to update previous reviews of microbiological immunocytochemistry in order to identify areas of current importance in this continually expanding area of research. Publications in virology, bacteriology and protozoology indicate a continued interest in immunocytochemistry. Deployment of colloidal gold techniques is almost universal in these applications. The post-embedding technique was the most widely applied technique although a few studies employed the immunonegative stain, pre-embedding and immunoreplica techniques, thereby reflecting the use of colloidal gold in all other areas of the biological sciences.

Studies On The Occurrence And Elemental Composition Of Bacteria In Freshwater Plankton, K. N. Booth, D. C. Sigee, E. Bellinger

Scanning Microscopy

The occurrence and cation content of bacteria in a eutrophic freshwater lake (Rostherne Mere, Cheshire, UK) were investigated over a one year sampling period in relation to cation changes in the lake surface water and phytoplankton.

Scanning electron microscope examination of trawl-net and filtered samples demonstrated bacterial association with Anabaena, Aphanizomenon and diatoms. Direct counts of associated and unassociated bacteria showed that increases in bacterial population relate to population decline of major algal constituents.

Spectrophotometric determination of selected cation levels in the lake water demonstrated wide fluctuations throughout the sampling period, with elevated levels of transition metals before and at …

The Electron Microscope Detection And X-Ray Quantitation Of Cations In Bacterial Cells, D. C. Sigee, M. H. El-Masry, R. H. Al-Rabaee

Scanning Electron Microscopy

Electron microscope autoradiography and X-ray microanalysis have been used for the detection and quantitation of cations in the bacterium Pseudomonas tabaci. These techniques differ in the information they provide (relating to either cation uptake or in situ levels), their applicability to different cations, their sensitivity and their spatial resolution. With uptake of ⁶³Ni²⁺, high resolution autoradiography (involving gold latensification and physical development) demonstrated a high degree of cation localisation to the central nucleoid area (glutaraldehyde-fixed cells) and within this to the constituent chromatin (acetic-alcohol preparations).

X-ray microanalysis of whole bacterial cells revealed the presence of substantial levels …

Characterization Of Gram-Positive Bacterial Isolates From Burn Victims, Trisha A. Hannan

Dissertations and Theses

Streptococcus and Staphylococcus were collected from patients hospitalized at the Oregon Burn Center, Emanuel Hospital, Portland, Oregon, between October 27, 1980 and January 1, 1981. Forty-five isolates of Staphylococcus and twenty-one isolates of Streptococcus, Lancefield Group D, were included in the investigation.

The objectives of the investigation were: (i) to identify to the species level all isolates, (ii) to determine their susceptibility to antimicrobial agents, (iii) to test the organisms. over time for increasing resistance to silver, (iv) to determine, if present, a bacterium harbored within the burn unit (nosocomial bacterium), and (v) to determine any recognizable pattern of successive …

Limnological Aspects Of Lake Mead, Nevada-Arizona, John R. Baker, James E. Deacon, Thomas A. Burke, Samuel S. Egdorf, Larry J. Paulson, Richard W. Tew, Bureau Of Reclamation

Publications (WR)

Lake Mead is a deep, subtropical, moderately productive, desert impoundment with a negative heterograde oxygen profile occurring during; the summer stratification. investigations of the Boulder Basin of Lake Mead by the University of Nevada were initiated in November 1971. The primary objective of the study was to determine what effects industrial and sewage effluent from the Las Vegas metropolitan area, discharged into Las Vegas Bay, have had on the water quality and limnological conditions of Boulder Basin. Data from the 1975-76 period are presented in detail, with earlier data included in the summaries and discussions. Measurements of water temperature, dissolved …

Characterization Of Selected Bacteria From The North Arm Of The Great Salt Lake, John L. Crane Jr.

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Thirteen bacterial cultures were isolated from the North arm of Great Salt Lake during the months of January and February of 1973. Eleven isolates were gram-negative pleomorphic rods which lysed in hypotonic solution. The remaining two were gram-positive cocci. All isolates and one known strain of Halobacterium salinarium were subjected to examination of morphological, cultural, physiological, and biochemical characteristics. A numerical taxonomic analysis was applied to the compiled characters to compute a coefficient of similarity for each individual isolate as compared to all other isolates. A comparative analysis was included in the similarity computation using characters assembled from those reported …

The Effects Of Atropine On The Growth And Respiration Of Two Species Of Bacteria Normally Inhabiting The Human Gastro-Intestinal System, Mary M. Ramos

Theses & Dissertations

It is the purpose of this study to determine whether the drug atropine has an effect on bacteria found normally inhabiting the human body, most specifically the gastrointestinal system. Atropine is one of the oldest drugs in medicine. It is derived from the roots and leaves of solanaceous plants such as henbane and Jimson weed. Atropine is often termed a belladonna alkaloid because it can also be found in the deadly nightshade plant, Atropa belladonna. Atropine is a highly competitive antagonist of acetylcholine at receptor sites in smooth muscles, cardiac muscle, and various glandular cells (5). Therefore, its effects are …

Studies On Some Bacteriolytic Bacteria Isolated From An Oxidation Pond, Paul Christian Radich

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

During bacteriological studies of the Logan City Sewage Oxidation Ponds, Logan, Utah, a group of bacteria was discovered which could lyse killed cells of Escherichia coli. The present research effort was an attempt to determine whether two isolates from this earlier study might play a role in the reduction of coliforms and other bacteria in the oxidation ponds. It was also desired to characterize partially the lytic enzymes produced by the two isolates and to determine as far as possible the organisms' identity.

Both isolates were Gram negative rod-shaped organisms with a single polar flagellum. On Cytophaga agar they …

The Effect Of Las Vegas Wash Effluent Upon The Water Quality In Lake Mead, D. A. Hoffman, P. R. Tramutt, F. C. Heller, Bureau Of Reclamation

Publications (WR)

This study developed from observations made during an earlier study on Lake Mead which was reported in CHE-70, Water Quality Study of Lake Mead. Results from that study indicated that poor-quality water was flowing into the Las Vegas Bay reach of Boulder Basin, Lake Mead. Also reports of deteriorating water quality, resulting in taste and odors in domestic water supplies taken from Boulder Basin as well as a reduction in the attractiveness of Las Vegas Bay for recreational uses caused by aquatic plants and algae blooms, indicated a need for a concentrated study concerning the effects of flows from Las …

Studies On An Antibiotic-Producing Strain Of Bacillus Megaterium X, Kishori Madhukar Chaubal

University of the Pacific Theses and Dissertations

On July 10, 1968, while observing the effects of ultra-violet light on a plate culture of Sarcino lutea, o contaminant was found growing in the form of a colony surrounded by a clear zone of inhibition where S. lutea had failed to grow. A smear from this contaminant colony was found to contain a Gram positive, chain-ond spore-forming bacillus. The organism was isolated and its antagonism against S. lutea was reshocked. Preliminary investigation of its activity against other bacteria indicated that this activity was directed against 5. lutea only. I was decided to continue the investigations with two aims in …

Molds And Bacteria In House Dust And Furniture Stuffing, Mary Ann Swaebly

Journal of the Minnesota Academy of Science

No abstract provided.