Biology Commons^™

Examining The Probiotic Potential Of Pseudoalteromonas Rubra Situated In The Scholarly And Public Spheres, Sam Ruemmler

Honors Senior Capstones and Theses

Climate change is affecting our oceans negatively in many ways, such as rising temperatures and increased disease outbreaks. While there are many diseases that are affecting marine organisms, bacteria of the genus Vibrio are present globally and are known to favor warmer waters, which means increasing temperatures will cause an uptick in infections. One species, V. coralliilyticus, has been identified as a pathogen responsible for coral disease and death as well as mortality in rainbow trout, brine shrimp, and Pacific oyster larvae. A possible solution to the rising prevalence of disease is the use of probiotics. One such probiotic candidate …

The Impact Of Large, Manipulated Rainfall Events On Soil Greenhouse Gas Fluxes Is Mediated By Warming, Spatial Heterogeneity And Hurricane Disturbance Recovery In A Puerto Rican Wet Tropical Forest, Nibia Becerra Santillan

Biology Honors Projects

Substantial uncertainty surrounds how terrestrial ecosystems may respond to the interaction of multiple global change drivers, especially the interaction of atmospheric warming and more frequent or severe extreme weather events. Climate models suggest that the Caribbean may experience more frequent and/or heavier rainfalls under future climate, which is likely to also interact with increased atmospheric temperatures. In this thesis, I investigate how long-term (“press”) soil moisture and temperature conditions interact with acute (“pulse”) extreme precipitation events to influence CO₂ fluxes, labile carbon, and microbial carbon in a wet tropical forest in Puerto Rico. I conducted a fully-factorial soil incubation experiment …

Mutations In The Mmp20 Gene In Association With Amelogenesis Imperfecta, Elaine Vanterpool, Alicia Broomfield-Myrie

Student Posters

Enamel, the hardest substance in the body, protects the teeth from various forces like temperature and physical factors that would cause damage. Depending on the kind of AI one has developed, the phenotypes can range from thin teeth to teeth discoloration or decay. MMP20, a gene commonly associated with AI, encodes for Enamelysin, a protein crucial for enamel formation. It is also known as matrix metallopeptidase 20. It becomes active when it is cleaved by cellular proteases. When this gene is mutated, the splicing pattern is altered. Consequently, this can cause disease. This study was developed to analyze the pathogenicity …

Drone Thermal Imaging And Benthic Time-Series Analysis Show Dynamic Spatial And Temporal Delivery Of Submarine Groundwater Discharge On Reef Ecosystems, Sophia G. Zummo, Florybeth F. La Valle, Lucian Himes

Faculty Data Sets

Submarine groundwater discharge (SGD) introduces nutrient-rich, low-salinity water into coastal ecosystems, significantly altering reef biogeochemistry. At Black Point, Oʻahu, we employed a novel, two-pronged approach that integrates a cost-effective small unmanned aerial system equipped with a thermal infrared (sUAS-TIR) sensor and high-resolution benthic salinity time series to resolve previously unobserved, fine-scale patterns of SGD delivery. sUAS-based sampling overcomes key limitations of prior SGD mapping methods, such as labor-intensive and spatially constrained in situ sampling, by enabling rapid deployment, real-time visualization of mixing dynamics, and high-resolution imagery. Unlike previous studies that relied on customized systems that required independent sensor integration, our …

Evolution Of Chitinases In Amphibians: A Multi-Faceted Group Of Enzymes With Dual Function In Digestion And At The Forefront Against Fungal Infections, Devashri Narayan

Theses and Dissertations

Chitinases are essential enzymes found in living organisms such as amphibians, and they ensure that amphibians survive in their varied ecosystems. They are crucial in the digestion and immunity of most organisms, including plants and animals. Chitinases’ diversity of functions is a testament to their evolutionary adaptability. The primary function of chitinases is the breakdown of chitin, a complex polymer of saccharides often found in the exoskeleton of insects and the walls of fungi. Amphibians that feed on insects make use of chitinases to hydrolyze chitin into simpler sugars that can be easily absorbed to extract the necessary nutrients from …

Under Stress: Maternal Effects On Offspring Development In Live-Bearing Fish, Ruby Jensen, Emily Mead, Jerald B. Johnson

Library/Life Sciences Undergraduate Poster Competition 2025

Research has shown that the stress response in adult fish can lower sex hormone levels, disrupt mating behavior, and reduce overall reproductive success (1). While stress is known to impact an individual's ability to reproduce, its effects on offspring after birth remain unclear. Specifically, the influence of maternal stress during gestation on offspring growth and maturation is still unknown.

To better understand how maternal stress affects offspring development, we will study the live-bearing fish Alfaro cultratus from birth to reproductive maturity. We will observe the timeline of developmental milestones in offspring whose mothers experience stress during gestation to assess potential …

Effect Of Isostatic Rebound On Soil Biodiversity, Robert Candland, Blake Harrison, Solinus Farrer, Kyle Lake, Byron Adams

Library/Life Sciences Undergraduate Poster Competition 2025

Purpose: Understand the effect of shifting tide lines on organism diversity and abundance

Ms Environmental Biology Capstone Project, Emily A. Patton

Regis University Student Publications (comprehensive collection)

This is a masters Thesis for MS in Environmental Biology containing four chapters including a literature review, grant proposal, journal manuscript, and stakeholders report on a current environmental issue. (1) Noise Pollution and Avian Communication in Urban Ecosystems: When the Natural World Struggles to Hear Itself. Urban noise masks essential bird vocalizations, which harms avian fitness. Most species are displaced, and those few urban birds which counteract this noise with song adaptations likely experience trade-offs. America's noise policy remains undeveloped, threatening the health of both humans and avian wildlife (2) Application of Noise Barrier Technology for the Restoration of Urban …

Aligning Exons, Introns, And Flanking Regions Of Cyc And Cuc Genes In Lonicera (Caprifoliaceae), Mark Mordukhay

Theses and Dissertations

The genus Lonicera (Caprifoliaceae) exhibits great diversity in floral symmetry, petal fusion, and organ arrangement, making it an ideal system for exploring the genetic basis of morphological evolution. We focus here on the roles of CYC and CUC gene families, (CYC2A, CYC2B, CYC3A, CYC3B, CUC2A, and CUC2B) and their potential contributions in shaping floral symmetry and organ fusion. The data set included nucleotide sequences from over 90 Lonicera species, extracted from samples collected from natural habitats or herbaria and then sequenced. A custom bioinformatics pipeline was developed in R using Bioconductor packages to automate BLAST searches, filter results, scan for …

The Involvement Of Camp In The Secretion Of Il-10, Jyanna J. Mendola

SURF Posters 2025

Schwann cells have been found to play a key role in inflammation and repair following nerve injury. During nerve injury, the myelin sheath becomes damaged, stimulating Schwann cells to secrete cytokines and initiate an inflammatory response. They begin the process of repair by stimulating macrophages to make pro-inflammatory cytokines, such as Tumor Necrosis Factor-Alpha (TNF-a), and anti-inflammatory cytokines, such as Interleukin 10 (IL-10) which promotes healing and injury. Although it is clear Schwann cells play a role in nerve repair, there is still yet to be known regarding the exact mechanisms by which they do so. In vitro, Lipopolysaccharide (LPS), …

Ludwigia Hydrology Study, Rebecca E. Drenovsky, Rebecca Reicholf, Caryn J. Futrell*, Brenda Grewell*, Blanca Gallego-Tévar

Ludwigia Hydrology Study

Premise: Hydrological regime influences wetland plant species distribution and performance.Global warming and extreme weather events are magnifying flooding patterns, and understanding how invasive taxa respond across life stages (establishment vs. established phase) is important for predicting and managing their colonization and spread. Our objective was to measure flood trait responses at contrasting life stages in closely related congeners (Ludwigia peploides, diploid; L. hexapetala, decaploid; Onagraceae) differing in their invasiveness in the field.

Methods: In the field, we assessed phenological responses to seasonal hydrological changes, and in mesocosms, we assessed flood stress responses of establishing shoot fragments under deep-flooded, …

Ms Environmental Biology Capstone: Evaluating Environmental Risks And Conflicts In Golf Course Landscapes, Meredith Boos

Regis University Student Publications (comprehensive collection)

1) This review investigates the relationship between pesticide use on golf courses and in agriculture to determine whether the adverse health effects documented in agricultural settings also apply to golf course environments. While the negative health effects from agricultural pesticide use are well established, golf courses use pesticides with greater frequency and intensity, suggesting a potentially higher exposure risk for both workers and players.

2) This study proposes methods to quantify pesticide bioaccumulation on golf courses and adjacent lands. We hypothesize that areas surrounding golf courses will exhibit a spatial gradient of pesticide accumulation, increasing with proximity to treated sites …

Enabling Better Interoperability And Reusability For Down Syndrome Transcriptomic Datasets, Harrison Oaks, Garrett L. Wride, Stephen Piccolo

Library/Life Sciences Undergraduate Poster Competition 2025

Introduction: Gene expression profiling has become a cornerstone of biomedical research, offering relevant insights into the molecular mechanisms that underlie complex conditions such as Down syndrome (DS), a condition caused by trisomy 21. RNA expression data from individuals with DS have highlighted critical pathways involved in development, immune function, and disease susceptibility. Despite the availability of over 100 publicly shared RNA expression datasets, their potential remains underutilized due to inconsistent metadata, diverse normalization protocols, and varying data quality. Addressing these barriers is vital to enabling researchers to standardize, integrate, and analyze datasets effectively. We do this by creating a data …

Effects Of Predation On Cognition In Brachyrhaphis Rhabdophora, Elizabeth F. Jenkins, Jerald B. Johnson

Library/Life Sciences Undergraduate Poster Competition 2025

Does predation environment affect the cognitive abilities of the tropical fish Brachyrhaphis rhabdophora?

Barks Vs Bears: A Ruff Reality, Fern Luttrell, Tom Smith, Stephen Herrero, Lana Ciamiello, Hank Hristienko, Erin Jacoway, Linda Wiggins

Library/Life Sciences Undergraduate Poster Competition 2025

• Will your dog protect you from a bear?
• Do dogs provoke bear attacks?
• Is it safe for your dog to be in bear country?

Assessing Sandy Beach Health Throughout The South Atlantic Bight With Ghost Crabs, Raquel Wilson, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2025

To better inform the management and protection of marine ecosystems, we examined human impacts on sandy beach health across the South Atlantic Bight by assessing the abundance and size of ghost crab burrows, and habitat quality. We used an urbanization index to measure the level of human impact. Sandy beach ecosystems are ecologically and economically important, yet they face immense pressure from increasing human activity^1,2. Protecting these ecosystems is critical yet challenging due to their large size, but we can evaluate their health and the extent of human impact using a bioindicator species. We used the Atlantic ghost …

Those Dam Fish: Morphological Response In Two Riverine Fish Species Following Dam Construction, Leah Stimpson, Austin Rejcek, Mark C. Belk

Library/Life Sciences Undergraduate Poster Competition 2025

Flow regime is a known predictor of fish shape¹. Conspecific populations living in distinct flow environments often exhibit different morphologies.

Dams present a unique opportunity to observe a dramatically transformed flow regime. Fish populations that once occupied a fast-flowing habitat suddenly live in an artificial reservoir.

The Parana Basin in southern Brazil boasts some of the greatest fish diversity in the world. The biological implications of hydroelectric dam construction along its major rivers must be studied.

Previous literature has been limited to a single species or ecological niche².

➢ Our objective was to describe what morphological …

I’M Just Like You: Do Sympatric Lizard Species Exhibit Convergent Morphology? (Genus Sceloporus), Abigail Lamartine, Alison Whiting

Library/Life Sciences Undergraduate Poster Competition 2025

The spiny lizards, genus Sceloporus, are the most speciose genus of reptiles endemic to North America. These lizards are commonly seen doing “push-ups” and head bobs, showing off their bright blue belly and throat patches (figure 5).Sceloporus use these displays to attract mates and defend their territory, and the size and color of patches is the most commonly used character to identify species(see figure 3). Within southwestern Utah, there is a small region where two species, S.occidentalis and S. tristichus, overlap in range (figure 1), and lizards can be found that appear to have patches intermediate between the two …

Frog Barcodes: Scanning The Secret Species Of Pelodryadinae, Kennedy Hunter, Taylor Probst, Alison Whiting

Library/Life Sciences Undergraduate Poster Competition 2025

Tree frogs (Hylidae) have unique adaptations such as toe pads for life in the trees (figure 1).

The subfamily Pelodryadinae is poorly known and primarily found in the Australopapuan region.

Papua New Guinea is the island with the greatest frog diversity but many species remain undescribed.

DNA barcoding has been shown to be an effective tool in species delimitation and for examining species diversity in poorly understood groups.

Epigenetic Reprogramming In Pediatric Tumors Predicts Active Pathways In The Tumor Microenvironments, Noah Moffat, Clark Tolbert, Colin Wessman, Matthew H. Bailey

Library/Life Sciences Undergraduate Poster Competition 2025

Figure 1: We collected samples from five different studies that analyzed and generated spatial transcriptomic data from adult and pediatric brain tumors1-4.

Understanding The Individual Behavioral Variation Of Asian Elephants (Elephas Maximus) As An Indicator Of Human Elephant Conflict, Julia Brzezicki

Masters Theses & Specialist Projects

Human-Elephant Conflict (HEC) is an increasingly common event that arises from resource competition due to overlaps in human and elephant environments. Using a conservation behavior approach, the behaviors of elephants can be studied to enhance conservation efforts to mitigate HEC by better predicting which elephants engage in HEC. To understand the factors that affect individual behavioral types of adult Asian elephants (Elephas maximus), my project examined the behavioral patterns displayed by an elephant population in Sri Lanka. I collected demographic and behavioral data of a subset of 15 adult elephants to determine individual differences in five behavioral categories: Affiliation, aggression, …

A Systematic Study Of The Highly Endemic Spider Beetle Fauna (Coleoptera: Ptinidae: Ptininae) Found In The Coastal Deserts Of Perú, Marlena Askren

Masters Theses & Specialist Projects

Spider beetles are small, often flightless insects that occur in hyperarid environments around the world. They exhibit interesting morphology and behavior that allows them to conserve water they obtain from plant material, dung, and other detritus. One hyperarid region in which they are found is the Pacific coast of Perú and northern Chile. The Sechura Desert, Peruvian Coastal Desert, and Atacama Desert make up the arid coast where spider beetles occur from north to south. Through multiple years of field work and museum collections, populations of spider beetles were found along the coast in isolated pockets of vegetation, separated by …

Biocultural Mobility: The Impact Of Osteoarthritis On Rural Kentuckians, Alexandria Anderson

Mahurin Honors College Capstone Experience/Thesis Projects

Osteoarthritis (OA) is a common chronic degenerative joint disease that results in joint pain and loss of joint function, and it is rising in prevalence alongside an aging population. OA has a complex etiology, with various biological, mechanical, and sociocultural factors affecting its acquisition and progression. Like most diseases, OA has a differential prevalence among populations; it is disproportionally more common in underserved communities, including rural areas. This thesis presents (1) a study comparing selected OA treatment type and patient travel time, (2) a study comparing OA comorbidity amount and rurality, and (3) a discussion of exploratory interdisciplinary methods in …

Characterization Of Legionella Pneumophila Effector Protein Ceg10, Emmanuella Ofoka

Masters Theses & Specialist Projects

Legionella pneumophila, the causative agent of Legionnaires' disease, utilizes a Type IV secretion system (T4SS) to transport effector proteins into host cells. This bacterium is said to have over 300 effector proteins. Among these, the Ceg10 effector protein had remained uncharacterized, despite evidence suggesting the importance of bacterial effector proteins in the host-pathogen interaction. This study aimed to perform a structural and functional characterization of Ceg10 through transcriptomic, bioinformatics, and molecular analyses. Transcriptomic profiling of HEK 293T cells expressing Ceg10 revealed significant differential gene expression, with approximately 20 upregulated genes, including leucine-rich repeat, as well as other downregulated genes. …

Learning In Nonleafcutting Fungus-Gardening Ants, Elizabeth D. Boshers

Biology Theses

Social complexity influences learning and other cognitive behaviors, but for insects, this influence is not well understood. Delayed rejection is an aversive learning behavior previously studied exclusively in leafcutting ant species, the most socially complex of the fungus-gardening ants. Fungus-gardening ants are unique in that they do not directly consume the material they forage, using it instead as substrate to cultivate a symbiotic fungus on which the ants are obligately dependent. Here, I attempt to induce delayed rejection in several fungus-gardening ant species that exhibit a range of social complexity, then compare the characteristics of delayed rejection behavior among species. …

Acoustic Monitoring Of Oak Toads (Anaxyrus Quercicus), A Longleaf Pine (Pinus Palustris) Ecosystem Endemic Amphibian, Alex Ward Foote

Theses, Dissertations and Capstones

The Longleaf pine ecosystem is one of the most endangered ecosystems in the world with only 3% remaining. Many endemic species to the longleaf pine ecosystem are also in decline and suffer from habitat loss resulting from fire exclusion, urbanization, agriculture, and industrial silviculture. Oak Toads (Anaxyrus quercicus) are a longleaf pine ecosystem obligate; the species is experiencing declines across its range and only has protections in Virginia and North Carolina. We used data from an array of Automated Recoding Units across four years (2013, 2014, 2015, 2019) at three state-owned wildlife management areas to capture audio files …

A Metadata Analysis Of Unionid Mussels Of The Greenup Pool Of The Ohio River Using Occupancy Modeling And Species Area Curves, Tyler Mitchell Annarino

Theses, Dissertations and Capstones

Although North America contains the largest diversity of freshwater mussels in the world, only ~24% of species in the United States and Canada have stable populations. This group provides unique hurdles for surveying, and current unionid survey protocols include neither longitudinal studies nor randomization of sites. This project conducts a metadata analysis of freshwater mussels in the Greenup Pool of the Ohio River (GPOR) to answer three questions: 1. Does a combination of longitudinal scope, randomization of sites, and historic methodology of surveying result in useful occupancy/detection models (ODMs) of unionids in large streams at the family level? 2. Does …

Propelling Whole-Cell Biosensor Creation By Leveraging Gene Fusion To Assemble Synthetic Functional Transcription Factors For The Detection Of Biomarkers, Samuel J. Verzino

Theses and Dissertations

Biosensors are analytical devices that leverage biological modules for the detection of molecules of interest. As customizable tools designed to aid in a wide array of diagnostics, these instruments are rapidly advancing the field of synthetic biology. While varied in their construction and purpose, biosensors are ultimately concerned with converting a physicochemical stimulus into a detectable signal. Among the many existing variants, whole-cell biosensors (WCBs) stand out due to their versatility and engineering potential. WCBs are a type of biosensor in which a physiologically active cell sustains an array of biomolecular elements - receptors, transporters, regulators, etc. - capable of …

Analysis Of The Influence Of Telomere Length Variation On Flowering Time And Plant Fitness In Arabidopsis, Brianna Spadavecchia

Theses, Dissertations and Capstones

Telomeres are conserved structures at the ends of eukaryotic chromosomes that promote genome stability. In most eukaryotes, the DNA found within these protective end caps consists of short, G-rich nucleotide repeats. Cells with critically short telomeres face a variety of potential adverse outcomes such as end-to-end chromosome fusion, apoptosis, etc. The length of telomeric DNA varies substantially between different plant species and even between genotypes of the same species. A previous study using T-DNA mutants of the model plant Arabidopsis thaliana with long or short telomeres suggested that telomere length may be an adaptive trait. Specifically, for reproductive fitness, the …

Climate And Gypsum Parent Material Shape Biocrust Communities And Moss Ecology In The Chihuahuan And Mojave Deserts, Katelyn Gobbie, Nicole Pietrasiak, Brian M. Jusko, Rebecca E. Drenovsky

2025 Faculty Bibliography

Biological soil crust communities (biocrusts) establishing on gypsum soils have been well-documented for their prolific appearance and rich diversity of lichens and bryophytes. However, studies characterizing gypsum biocrusts have occurred primarily outside of the U.S., most of which lack comparisons to other soil types. We conducted intensive field surveys to evaluate the ground cover and frequency of biocrust functional groups and moss species on gypsum and non-gypsum soils in the U.S. regions with the most extensive gypsum outcrops, the northern Chihuahuan and eastern Mojave Deserts. Study sites were stratified by geomorphology and paired, so that every gypsum site was matched …