Biology Commons^™

Delivery Of Bikdd Proapoptotic Gene In Peptide-18 Targeted Poly(2-Oxazoline)-Dope Nanoliposomes For Breast Cancer Models, Zeynep Büşra Bolat, Ayça Ece Nezi̇r, Ongun Mehmet Saka, Itir Ebru Zemheri̇, Sevgi̇ Gülyüz, Umut Uğur Özköse, Özgür Yilmaz, Asuman Bozkir, Di̇lek Telci̇, Fi̇kretti̇n Şahi̇n

Turkish Journal of Biology

Breast cancer is the most common cancer type and the major cause of death in females worldwide. For effective breast cancer treatment, systems with promising delivery of anticancer agents is an important strategy. Peptide 18 (P18), a tumor homing peptide, shows high binding affinity towards breast cancer cells. Nanoliposomes are known to have enhanced accumulation ability in tumors with longer systemic circulation. Poly (2-ethyl-2-oxazoline) (PEtOx) polymers conjugated with DOPE were used to prepare PEtOx-DOPE nanoliposomes. BikDD is a mutant form of Bik gene, a member of the BH3-only proapoptotic genes, mimics the constitutively phosphorylated form of the gene. To the …

Pterostilbene Suppresses Head And Neck Cancer Cell Proliferation Via Induction Of Apoptosis, Tali̇h Özdaş, Si̇bel Özdaş, İpek Canatar, Erdem Kaypak

Turkish Journal of Biology

Background/aim: Head and neck cancer (HNC) is one of the most prevalent causes of death worldwide, and the discovery of anticancer agents for its prevention is very important. Pterostilbene (PS) is a trans-stilbene reported to be beneficial in managing various cancers. The objective of the study was to evaluate the cytotoxic, anti-proliferative, pro-apoptotic and anti-migrative effect of PS on HEp-2, SCC-90, SCC-9, FaDu and Detroit-551 cell lines. Materials and Methods: MTT and live/dead assays were employed to assess cell-viability, while cell migration test was performed to evaluate wound healing capacity. The mRNA, protein and intracellular expression level of CASP-3, BAX …

Optical Imaging And Gene Transfection Potential Of Linear Polyethylenimine Coated Ag2s Near-Infrared Quantum Dots, Altay Savalan

Turkish Journal of Biology

Background/aimApplication of biocompatible heavy metal free and cationic Ag2S NIR QDs, which are highly luminesce in the medical range (700-900 nm), as a non-viral gene delivery system paves the way to overcome the auto-fluorescence and easily track the delivery of the genes in real time as it happens.Materials and methodsHere, the newly developed small and colloidally stable 2-mercaptopropionic acid (MPA)-capped Ag2S aqueous quantum dots electrostatically complexed with linear polyethyleneimine (LPEI) (Ag2S@2MPA/LPEI) was investigated for the first time both as a strong fluorescent probe and as a non-viral gene delivery vector for the highest tracking of the system and delivery of …

Elucidating The Heterogeneity And Epigenetic Determinants Of Memory-Like Natural Killer Cell Differentiation, Jennifer Tran

Arts & Sciences Graduate Student Theses and Dissertations

Natural killer (NK) cells are innate lymphoid cells that are a first line of defense against virally infected or malignant cells. Their ability to recognize and kill target cells is controlled by engagement of inhibitory, activating, and cytokine receptors. This leads to release of granules that contain perforin and granzymes, expression of death receptor ligands, and production of cytokines and chemokines. An effective NK cell response results in target cell death, along with changes in the nearby cellular microenvironment to promote immunity. As such NK cells play an essential role in tumor immunosurveillance, and there is an inverse correlation between …

Elucidating The Heterogeneity And Epigenetic Determinants Of Memory-Like Natural Killer Cell Differentiation, Jennifer Tran

Arts & Sciences Graduate Student Theses and Dissertations

Natural killer (NK) cells are innate lymphoid cells that are a first line of defense against virally infected or malignant cells. Their ability to recognize and kill target cells is controlled by engagement of inhibitory, activating, and cytokine receptors. This leads to release of granules that contain perforin and granzymes, expression of death receptor ligands, and production of cytokines and chemokines. An effective NK cell response results in target cell death, along with changes in the nearby cellular microenvironment to promote immunity. As such NK cells play an essential role in tumor immunosurveillance, and there is an inverse correlation between …

Intelligrader: A Framework For Automatic Short Answer Grading, Inconsistency Check And Feedback In Educational Context - Conception, Implementation And Evaluation, Paradesi Sree Lakshmi, Jay B. Simha, Rajeev Ranjan

Karbala International Journal of Modern Science

Automatic Short Answer Grading (ASAG), an escalating realm in natural language understanding, constitutes a focal point of research within the broader field of learning analytics. Over time, many ASAG solutions have been proposed to address the difficulties in teaching. However, no work addressed three crucial aspects of evaluation together, i.e., i) automatic evaluation of brief subjective/descriptive answers written in English, ii) identifying the evaluation inconsistency, and iii) provision of providing feedback about inconsistent evaluation to the evaluator. The current work proposes IntelliGrader, a comprehensive ASAG system that addresses the above-mentioned issues. Automated grading is accomplished through a model answer-based approach. …

Isolation And Characterization Of Fermenting Bacterial Isolates From Vinegar Industry Waste In Local Markets Of Wasit Province, Tayseer Shamran Al-Deresawi

Karbala International Journal of Modern Science

The use of waste in the vinegar industry is an important practice of the food industry worldwide; however, this critical practice is neglected in many parts of Iraq. According to this, the current study was conducted to isolate and characterize fermenting bacterial organisms from this waste in Wasit Province, Iraq. Samples of vinegar industry by-products were collected from local businesses. These samples were prepared by using Hestrin-Schramm (HS) medium. Two methods, direct and indirect inoculations, were followed. The purified growth was examined using morphological and biochemical tests. Moreover, PCR was employed to confirm the identity of each bacterial isolate. The …

The Heart-Brain Axis: Exploring Shared Genetic Signatures And Environmental Modifiers On Heart Failure And Alzheimer’S Disease Pathology, Helen Butler

MUSC Theses and Dissertations

Heart failure (HF) and Alzheimer’s Disease (AD) are two leading causes of death in the United States. Conventionally viewed as independent conditions, HF/AD coexist in ~30% of patients and are mechanistically linked by shared genetic and biochemical characteristics. The del Monte lab has established the concept of the heart-brain axis through human samples and murine models, providing a framework for this dissertation which focuses on the interplay between genetics and the environment in shaping the heterogeneity of disease phenotypes.

1) Loss of function mutations in presenilin (PSEN1/2) genes represent overlapping genetic signatures in AD/HF. Presenilins form the g-secretase …

A Review Of Biomass-Based Natural Coagulants For Water Pollution Remediation: Impact Of Properties And Coagulation Operational Parameters, Nur Faizzah Husna Mohammad Ali, Megat Ahmad Kamal Megat Hanafiah, Sabiha Hanim Saleh, Mohd Tajudin Mohd Ali, Shariff Ibrahim

AUIQ Complementary Biological System

The rapid growth of cities, industries, and population has made tackling water scarcity increasingly challenging as the global demand for clean drinking water continues to rise. Consequently, extensive research in water and wastewater treatment, specifically focusing on the coagulation process, has ensued. Coagulation plays a critical role in water treatment, and its effectiveness depends on the type of coagulant used. However, the widespread use of chemical coagulants raises concerns for the environment and public health. Consequently, there has been growing interest in exploring natural alternatives derived from plants and animals. This review examines how the properties of natural coagulants, as …

Crocodylian Diversity During The Early Eocene Climatic Optimum In The Golden Valley Formation Of North Dakota, U.S.A., Adam P. Cossette, David Tarailo

Biological Sciences Faculty Publications

Rich bone beds from the lower Eocene strata of the Golden Valley Formation of Stark County, North Dakota reveal a speciose sympatric crocodylian fauna. However, analyses demonstrate limited phylogenetic diversity among these co-occurring taxa, and of the four species known for the locality, three are alligatorids and one is a crocodyloid. Phylogenetic hypotheses recover Chrysochampsa mylnarskii as a late lived member of Brachychampsini—a stem-based clade including Brachychampsa montana and all alligatorids more closely related to it than to Caiman crocodilus or Alligator mississippiensis—and a new genus and species, Ahdeskatanka russlanddeutsche groups with species of Allognathosuchus. The crocodylians, partitioned by body …

Rapid Unleashing Macrophage Efferocytic Capacity By Transcriptional Pause Release, Turan Tufan

Arts & Sciences Graduate Student Theses and Dissertations

During development, inflammation or tissue injury, macrophages engulf multiple apoptotic cells via efferocytosis to maintain tissue homeostasis. The mechanism by which macrophages rapidly adapt their transcription for continuous corpse uptake is not well understood. Transcriptional pause/release is a conserved mechanism, in which RNA polymerase (Pol) II initiates transcription for 20-60 nucleotides, is paused for minutes to hours and is then released to the elongation phase. We show that macrophages quickly use Pol II pause/release upon encountering corpses to trigger a rapid transcriptional response. This mechanism is essential for continuous efferocytosis but does not affect other forms of phagocytosis. Genomic data …

The Role Of Group 2 Innate Lymphoid Cells In Restoring Lung Health And Chitinase Function After Epithelial Injury, Haerin Jung

Arts & Sciences Graduate Student Theses and Dissertations

Alveolar epithelial cells provide oxygen transport and act as a first line of defense against pathogens and environmental triggers that disturb tissue homeostasis. However, in the context of epithelial injury, fibrotic and inflammatory lung diseases develop where regenerative responses may become dysregulated or recurrently engaged. One cause of lung injury is infection with cytopathic respiratory viruses such as influenza and SARS-CoV-2 viruses, which induce lung inflammation, tissue damage, and epithelial cell injury and loss. Restoration of barrier integrity after lung injury is critical for re-establishing healthy lung function but the underlying mechanisms are unclear. In the steady state, lung epithelial …

The Role Of Group 2 Innate Lymphoid Cells In Restoring Lung Health And Chitinase Function After Epithelial Injury, Haerin Jung

Arts & Sciences Graduate Student Theses and Dissertations

Alveolar epithelial cells provide oxygen transport and act as a first line of defense against pathogens and environmental triggers that disturb tissue homeostasis. However, in the context of epithelial injury, fibrotic and inflammatory lung diseases develop where regenerative responses may become dysregulated or recurrently engaged. One cause of lung injury is infection with cytopathic respiratory viruses such as influenza and SARS-CoV-2 viruses, which induce lung inflammation, tissue damage, and epithelial cell injury and loss. Restoration of barrier integrity after lung injury is critical for re-establishing healthy lung function but the underlying mechanisms are unclear. In the steady state, lung epithelial …

Rapid Unleashing Macrophage Efferocytic Capacity By Transcriptional Pause Release, Turan Tufan

Arts & Sciences Graduate Student Theses and Dissertations

During development, inflammation or tissue injury, macrophages engulf multiple apoptotic cells via efferocytosis to maintain tissue homeostasis. The mechanism by which macrophages rapidly adapt their transcription for continuous corpse uptake is not well understood. Transcriptional pause/release is a conserved mechanism, in which RNA polymerase (Pol) II initiates transcription for 20-60 nucleotides, is paused for minutes to hours and is then released to the elongation phase. We show that macrophages quickly use Pol II pause/release upon encountering corpses to trigger a rapid transcriptional response. This mechanism is essential for continuous efferocytosis but does not affect other forms of phagocytosis. Genomic data …

Study Of A Lemon, Marcella Carson

PANDION: The Osprey Journal of Research and Ideas

No abstract provided.

Hopper Hues, Hope S. Sohn

PANDION: The Osprey Journal of Research and Ideas

Artist Statement

From the elusive to the invasive, the insect world is often underrepresented in art. I created this piece to illustrate the beauty and intricacy of Romalea microptera, an invasive and destructive grasshopper species. Despite its impact on the environment, the beauty of this organism is apparent. A cascade of different appearances marks its life span until it reaches its final form; an array of oranges, pinks, and yellows.

What causes the division in public opinion on insects? What traits cause the recoil? There is beauty in both the beetle and the grasshopper, not just the butterfly. Expanding our …

The Ladybug, Alexandra M. Brisson

PANDION: The Osprey Journal of Research and Ideas

Artist Statement

The Ladybug is a piece inspired by my wide-eyed youth. As a child, I was in awe of the ladybug's (Coccinellidae) iconic red elytra adorned with their contrasting black spots. I was also told that encountering a ladybug meant good luck and to make a wish, which fueled my fascination. As I began studying biology, I discovered that they play a crucial ecological role as voracious predators of aphids and other plant pests. Their contribution to natural pest control underscores their importance in agriculture and ecosystem balance. Ladybugs are valued allies, not only in the eyes of sustainable …

The Short Allele Of The Serotonin Transporter Gene (Slc6a4) Increases Predisposition To Anxiety And Negative Emotional States, Gabriella Hitti

PANDION: The Osprey Journal of Research and Ideas

Mental disorders, such as anxiety and mood disorders, have long been a focus of psychological research, and increasing evidence points to a genetic basis for their occurrence. Polymorphisms of the serotonin transporter (5-HTT) gene (SLC6A4) may predispose an individual to anxiety-related symptoms. SLC6A4 has two common alleles: the short (s) allele, which results in less 5-HTT protein production, and the long (l) allele, which results in more 5-HTT. Integrated findings from psychometric evaluations, behavioral animal models, and biological assessments establish a link between the s allele of SLC6A4 and heightened anxiety phenotypes. The allele’s influence on serotonin levels and brain …

Freshwater Mussels As High-Resolution Recorders Of Local Climate Data: Learning From An Imperiled Species, Mia Meighan, Linh Truong, Tristan Keane, Jens Hegg, Joel Saunder, Casey Mccormack

CURCI Student Research

Freshwater mussels are native bivalve mollusks and an important indicator species for water quality. Over 65% of the species present in North America are imperiled.

In the West, mussel populations are generally declining, and the western ridged mussel (Gonidea angulata), native to the Pacific Northwest, is under review by the US Fish & Wildlife Service for Endangered Species Act listing.

Just as scientists use dendrochronology to determine the climate conditions of a forest using tree rings, sclerochronology can be used to determine the condition of stream habitats using growth bands stored within mussel shells.

Histological Characterization Of Larch Mountain Salamander (Plethodon Larselli) Head Glands, Jaxon Hopkins, Nancy Staub

CURCI Student Research

In salamanders, successful reproduction requires communication. Most male salamanders communicate to the female during courtship via a gland on their chin, called the mental gland. The sexually dimorphic mental gland in the dermis of the lower jaw is typical in males of species in the family Plethodontidae and is considered ancestral to the family (Sever et al. 2016). The mental gland consists of an aggregate of modified granular glands (MGGs) that produce pheromones (Houck and Sever, 1994; Rupp and Sever, 2018). During courtship, pheromones secreted from mental glands are delivered to the female through head rubbing and biting (Houck and …

How Viruses Grant Superpowers To Their Hosts: Investigating Prophage-Dependent Immunity In Cluster F Phages Through Genetic Engineering Of The Immunity Repressor Gene, Kassidy Espinosa, Kirk Anders

Biology Student Scholarship

Using genetic engineering to clone the immunity repressor gene in Cluster F phages has provided insights into prophage-dependent immunity. My research builds on the work of previous students, offering a deeper understanding of how bacteriophages confer immunity to their bacterial hosts.

Integrating Multiple Biodiversity Metrics To Assess Diatom Diversity And Diatom/Macrophyte Host Specificity In Four Florida Benchmark Lakes, Alana Jade Bronk

USF Tampa Graduate Theses and Dissertations

Biodiversity is declining across all natural environments, however, freshwater systems are thought to be among the most threatened. Quantifying and understanding trends in freshwater biodiversity has become more urgent as rapid biodiversity loss continues. To provide a robust ecological assessment, more than one bioindicator should be used, along with multiple biodiversity metrics. Macrophytes and diatoms are important components of aquatic systems, especially in shallow lakes. The relationship between macrophytes and epiphytic diatoms, though, is not clearly understood, and has not been well-studied, particularly in Florida, which has the largest abundance of natural freshwater lakes in the southeastern U.S This study …

Temperature Affects Nest Box Selection, Nest Success, And Nestling Size In A Southeastern Population Of Eastern Bluebirds, Katie Stumpf

Georgia Journal of Science

Given the critical role of temperature in avian reproduction, rising global temperatures will likely impact reproductive success of many bird populations. We examined the effect of nest box temperature, nest box color, entrance orientation, distance to forest cover, and distance to water on net box selection, nest success, and nestling size in eastern bluebirds (Sialia sialis) in central Georgia. White painted nest boxes had significantly cooler temperatures than control nest boxes (P < 0.05). However, model selection revealed that eastern bluebird females selected control boxes, despite their overall warmer temperatures. Nest success was associated with year, likely because of high nest predation during the warmer 2022 breeding season (P < 0.05). Nest success was also associated with cooler nest boxes, possibly because incubating females spend more time incubating which can reduce predation risks. Larger nestlings fledged from painted nest boxes, nest boxes with cooler temperatures, and nests from 2021, which we attribute to decreased thermoregulatory demands enabling faster nestling growth in cooler boxes and years. These seemingly opposing results suggest there may be an optimal temperature range where nest box temperature maximizes reproductive fitness while minimizing energetic demands on incubating adults. Determining this temperature range can help target management efforts to ensure specific goals are met.

Cultivation In Long-Term Simulated Microgravity Is Detrimental To Pyocyanin Production And Subsequent Biofilm Formation Ability Of Pseudomonas Aeruginosa, K. Z. M. Chen, L. M. Vu, Amy Cheng Vollmer

Biology Faculty Works

Pseudomonas aeruginosa forms aggregates known as biofilms. Previous studies have shown that when P. aeruginosa is cultivated in space, thicker and structurally different biofilms are formed than from those grown on Earth. We investigated how microgravity, simulated in a laboratory setting, influenced the growth, colonization, and virulence potentials of a P. aeruginosa PA14 wild-type strain, as well as two surface attachment-defective (sad) mutants altered at crucial biofilm-forming steps: flgK and pelA. Using high-aspect ratio rotating-wall vessel (HARV) bioreactors, P. aeruginosa bacteria were grown to stationary phase under prolonged (6 days) exposure to simulated microgravity or normal gravity …

A Lidar-Driven Pruning Algorithm To Delineate Canopy Drainage Areas Of Stemflow And Throughfall Drip Points, Collin Wischmeyer, Travis E. Swanson, Kevin E. Mueller, Nicholas R. Lewis, Jillian Bastock, John T. Van Stan Ii

Biological, Geological, and Environmental Faculty Publications

Precipitation channelled down tree stems (stemflow) or into drip points of 'throughfall' beneath trees results in spatially concentrated inputs of water and chemicals to the ground. Currently, these flows are poorly characterised due to uncertainties about which branches redirect rainfall to stemflow or throughfall drip points. We introduce a graph theoretic algorithm that 'prunes' quantitative structural models of trees (derived from terrestrial LiDAR) to identify branches contributing to stemflow and those contributing to throughfall drip points. To demonstrate the method's utility, we analysed two trees with similar canopy sizes but contrasting canopy architecture and rainfall partitioning behaviours. For both trees, …

Life, Death And Energy: What Does Nature Select?, James H. Brown, Chen Hou, Charles A.S. Hall, Joseph R. Burger

Biological Sciences Faculty Research & Creative Works

Evolutionary biology is poised for a third major synthesis. The first presented Darwin's evidence from natural history. The second incorporated genetic mechanisms. The third will be based on energy and biophysical processes. It should include the equal fitness paradigm (EFP), which quantifies how organisms convert biomass into surviving offspring. Natural selection tends to maximize energetic fitness, formula presented, where formula presented is mass-specific rate of cohort biomass production, formula presented is generation time, formula presented is fraction of cohort production that is passed to surviving offspring, and formula presented is energy density of biomas. At steady state, parents replace themselves …

Effects Of Roadways On Seasonal Movement Strategies And Mate Location Success In An Imperiled Pit Viper (Crotalus Horridus), Elizabeth J. Noble

Graduate Research Showcase

A detailed understanding of animal movement behavior is fundamental to effective conservation and management. Within populations, a diversity of movement strategies can be displayed in search of critical resources, and these strategies are influenced by multiple interacting factors related to individuals and the environment. Mating partners are one critical resource that often serves as a prominent selective force shaping movement during mating seasons. For many large-bodied snakes, such as pit vipers (Viperidae: Crotalinae), male mate- searching movements are the primary determinant of mate location success. During this time, males incur significant risks associated with elevated movement. In an increasingly human- …

Complete Genomes Of Two Cluster Ak Arthrobacter Phages Isolated From Soil Samples In Newburgh, Ny, United States, Veronique A. Delesalle, Mariah King, Tabitha Rozario, Noah Wolf, Connor Stewart, Luke Demato, Kevin Trafford, Saiman Adhikari, Van Dinh

Biology Faculty Publications

Two phages belonging to Arthrobacter phage cluster AK were isolated from soil samples collected in Newburgh, NY in 2021. Both are lytic with a genome organization typical of siphoviruses except for two genes encoding minor tail proteins with pyocin-knob domains found early in the genome, before the terminase gene.

Water Quality Of Silver Creek, A Buried Urban Stream, Nick Bultje, Valerie Krause, Rebecca Nulty

Student Papers and Reports

There are many sources of pollution that can affect a watershed. These pollutants can impact the water's pH, temperature, conductivity, and dissolved solids. Escherichia coli is a specific pollutant that comes from waste products of humans and animals. High levels of E. coli cause serious health problems. This study examines Silver Creek, a tributary within the Plaster Creek watershed. Silver Creek runs mostly underground and has storm drainage systems that flow into the creek. The goal was to explore the effects of the underground section of Silver Creek on water quality and E. coli levels. The water quality and levels …

Limits Of Longwood's Electron Microscope: A Study In Biological Imaging, Rachel Danzitz, Bjoern Ch. Ludwar

Fall Showcase for Research and Creative Inquiry

This study evaluates the imaging capabilities and limitations of the Hitachi TM4000II Plus Scanning Electron Microscope (SEM) and its Scanning Transmission adapter in biological imaging. A variety of specimens, including protozoans (e.g., Volvox and nematodes), bacteria (e.g., Magnetospirillum gryphiswaldense, Bacillus cereus, and Escherichia coli), tissue samples, and blood, were analyzed. While the SEM effectively imaged protozoans and bacteria, its ability to visualize viruses was deemed impractical. Despite claims of magnification up to 100,000x, clarity significantly decreased beyond 5,000x. The transmission adapter proved functional but challenging to operate consistently. The study highlights the microscope's limitations in producing high-clarity, …