Biology Commons^™

Evaluating Assessment Score Validity And Characterizing Undergraduate Biology Exam Content, Crystal Uminski

School of Biological Sciences: Dissertations, Theses, and Student Research

The landscape of undergraduate biology education has been shaped by decades of reform efforts calling for instruction to integrate core concepts and scientific skills as a means of helping students become proficient in the discipline. Assessments can be used to make inferences about how these reform efforts have translated into changes in department curriculum and course practices. Such changes can be measured using student scores on researcher-developed programmatic and concept assessments. Scores on these assessments are often assumed to be accurate representations of student biology content knowledge, but my work indicates that the validity of these interpretations may be threatened …

Novel Viruses Of The Family Partitiviridae Discovered In Saccharomyces Cerevisiae, Angela M. Crabtree, Ignacio De La Higuera, Kenneth Stedman, Multiple Additional Authors

Biology Faculty Publications and Presentations

It has been 49 years since the last discovery of a new virus family in the model yeast Saccharomyces cerevisiae. A large-scale screen to determine the diversity of double-stranded RNA (dsRNA) viruses in S. cerevisiae has identified multiple novel viruses from the family Partitiviridae that have been previously shown to infect plants, fungi, protozoans, and insects. Most S. cerevisiae partitiviruses (ScPVs) are associated with strains of yeasts isolated from coffee and cacao beans. The presence of partitiviruses was confirmed by sequencing the viral dsRNAs and purifying and visualizing isometric, non-enveloped viral particles. ScPVs have a typical bipartite …

Newer Surveillance Data Extends Our Understanding Of The Niche Of Rickettsia Montanensis (Rickettsiales: Rickettsiaceae) Infection Of The American Dog Tick (Acari: Ixodidae) In The United States, Catherine A. Lippi, Holly D. Gaff, Robyn M. Nadolny, Sadie J. Ryan

Biological Sciences Faculty Publications

Background: Understanding the geographic distribution of Rickettsia montanensis infections in Dermacentor variabilis is important for tick-borne disease management in the United States, as both a tick-borne agent of interest and a potential confounder in surveillance of other rickettsial diseases. Two previous studies modeled niche suitability for D. variabilis with and without R. montanensis, from 2002-2012, indicating that the D. variabilis niche overestimates the infected niche. This study updates these, adding data since 2012.

Methods: Newer surveillance and testing data were used to update Species Distribution Models (SDMs) of D. variabilis, and R. montanensis infected D. variabilis, in …

Predation Of Lepidophyma Flavimaculatum (Squamata: Xantusiidae) By Basiliscus Plumifrons (Squamata: Corytophanidae), Mauricio Quirós Rosales, Jose M. Mora, Randy Alvarado

Biology Faculty Publications and Presentations

Lizards are the most diversified group of living reptiles with 7176 species worldwide (Uetz 2022). They play key roles in ecosystems where they are prey to a wide variety of predators, including snakes, other lizards, mammals, birds, and invertebrates (Pianka and Vitt 2006). The tropical forests of the new world contain a high variety of species of different sizes, shapes, and colors. In Costa Rica in particular, at least 80 species of lizards have been reported (Leenders 2019). They occupy highly diverse habitat types where they participate in food webs that involve many other species of vertebrates and invertebrates.

Heavy Metal Bioaccumulation In Benthic Flatfishes From Territorial Waters Of Fujairah, United Arab Emirates, Shima Mohammed Albadi

Theses

Marine pollution from anthropogenic sources is a major threat to many coastal and offshore species. A variety of potentially harmful elements are released from wastewater runoff, leached from landfills or industrial effluents. I measured trace metal concentrations in the liver, gills, and muscles of two benthic flatfish species, the halibut (Hippoglossus hippoglossus), and the Dover sole (Solea solea). The primary objective of this thesis was to evaluate the status of the benthic fish species in the Fujairah waters to understand the pollution status of regional waters and assess their effects on human consumption. Inductively Coupled Plasma …

Molecular Mechanisms Of Natural And Synthetic Compounds Against Breast And Colon Cancer, Aysha Hamad Alneyadi

Dissertations

Cancer is a complex disease with various causes, including genetic mutations, viruses, chemical agents, and lifestyle factors. Although numerous studies have been conducted to develop a cure or novel medications for cancer, no standout treatment has been found. In this project, the use of various natural and synthetic compounds as potential cancer treatments was investigated using triple-negative breast cancer (TNBC) and colon cancer cells. The cancer therapy strategies investigated were based on plant-derived therapuetic approaches including an essential oil (Origanum majorana essential oil), a pure phytochemical (Carnosol), and newly developed synthetic drugs (Chromenes drevatives; C1 and C2). This study …

Anti-Pancreatic Cancer Activity Of Rhus Coriaria (Sumac), Yassine Elmahi

Theses

Cancer is a major health problem and is considered a chronic disease globally. Pancreatic cancer is one of the deadliest types of cancer. That is because symptoms increase until the cancer is spread to other parts of the body in late stages. Among the many different therapeutic approaches to treat cancer, it appears that many plants have promising treatment effects, and one of these plants is Rhus coriaria, commonly known as Sumac. Previous studies have indicated that the Sumac plant, which is used in cooking, possesses various therapeutic values, including antioxidant and antibiotic activities. This study investigates the effect …

Assessment Of Microplastics Consumed By Fishes In The United Arab Emirates Waters Of The Arabian Gulf, Maisan Mhd Al Wattar

Theses

Microplastics are plastic particles that are between 1 μm to 5 mm in size. Microplastics are currently threatening the marine ecosystems, including the water, sediments, and biota. Due to microplastics being relatively mobile, evidence of microplastic pollution is found in all water bodies, even in remote places such as the Antarctica. Although the Arabian Gulf is subjected to a number of anthropogenic stressors, to date, only few studies on the presence of microplastics have been carried out. This study assesses the microplastic presence in 60 fish samples from the emirates Abu Dhabi, Sharjah, and Ras Al Khaimah. The 5 fish …

Understanding The Intracellular Positive Regulatory Interactions In The Metabolic Network, Sultana Mohammed Al Zubaidi

Theses

Metabolism is an essential cellular process that produces essential components such as energy molecules and cellular building blocks. It is regulated by intracellular metabolite-enzyme interactions, which can increase or decrease enzyme efficiency. Each metabolic process is not evolved in nature and may not contribute to the optimal efficiency of the organism's metabolism. However, this study aims to clarify the relationship between cellular positive regulatory interactions and the cell's metabolic network, especially how these relationships regulate metabolism and how it evolved in nature. To obtain that, for each enzyme, the activation molecules from the BRENDA database were downloaded, mapped data to …

Screening And Genomic Characterization Of Multi-Drug Resistant (Mdr) Bacteria From Hospital Wastewater, Showq Abdelaziz Abdelaziz

Theses

Antimicrobial resistance poses an imminent global threat to public health, with multidrug-resistant (MDR) bacteria being particularly worrisome due to their resistance to multiple antibiotics. Hospital wastewater has been identified as a potential source of MDR bacteria and antibiotic-resistant genes (ARGs). This study aimed to investigate MDR bacteria's prevalence, diversity, and genomic potential in hospital wastewater samples collected from three different hospitals in the UAE. Samples were processed for culturing antibiotic-resistant bacteria using different HiCrome™ chromogenic media to screen for ESBL-producing, Vancomycin, Carbapenem, colistin, and Methicillin-resistant bacteria. The isolates were characterized using VITEk2 antibiotic profiling and identified using 16S rRNA sequencing …

Illuminating The Drivers Of Genomic Diversification In Lamprologine Cichlids Of The Lower Congo River, Naoko P. Kurata

Dissertations, Theses, and Capstone Projects

Freshwater fishes are extraordinarily diverse, considering their available habitats represent a tiny proportion of the earth’s surface. Rivers connect heterogeneous habitats in a linear form and provide excellent simplified models to understand how aquatic biodiversity evolves. In particular, the lower Congo River (LCR) in west Central Africa consists of a dynamic hydroscape exhibiting extraordinary aquatic biodiversity, endemicity, and morphological and ecological specialization. This system is thus an excellent natural laboratory for understanding complex speciation and population diversification processes. In my research, I explore various drivers of diversification, and adaptive evolution in rheophilic lamprologine cichlids endemic to the LCR, including Lamprologus …

Habitat Use And Winter Site Fidelity Of Lincoln’S Sparrow (Melospiza Lincolnii) In The Lower Rio Grande Valley Of Texas, Timothy Brush, Hugh E. Conway, Catherine C. Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

No abstract provided.

Movement Patterns Of Two Bat Species Active During Winter In The Southeastern United States, Reilly T. Jackson, Emma V. Wilcox, Riley F. Bernard

Biological Sciences Faculty Publications and Presentations

During winter in the southeastern United States, cavernicolous bats, many species of which are susceptible to white-nose syndrome, periodically arouse from torpor and occasionally leave hibernacula. We investigated the winter movements and habitat use of two bat species persisting during the white-nose syndrome epizootic: the gray bat Myotis grisescens and the eastern small-footed bat Myotis leibii. We deployed very-high-frequency radio transmitters on individual bats captured outside hibernacula to investigate activity, which may include foraging, during winter. We tracked bats from release at the cave entrance until their transmitter signal was lost or they remained stationary for 15 min or …

The Role Of Trees In Reducing The Urban Heat Island Effect On The New Jersey Institute Of Technology Campus, Newark, Nj, Dahlia Mansour

Theses

Every year, an estimated 12.3 million tons of glass are generated in the United States. Of all glass generated, only 3.1 million tons are recycled. Despite the near endless recyclability of glass waste, recycling rates in the United States remain low. This is primarily due to the lack of color separation and presence of non-recyclable materials associated with single-stream curbside collection used in many municipalities throughout the country. These factors make recycled glass unusable for many glass bottle manufacturers, causing the majority of glass placed in a recycling bin to eventually be landfilled. The purpose of this research is to …

The Evaluation Of Carbon Benefits Produced By Urban Street Trees, Hanyu Wang

Theses

Urban tree service and urban forestry are important fields that focus on the care and management of trees in urban areas. Urban trees provide numerous benefits around all aspect, including carbon storage, improving air and water qualities. Carbon storage refers to the process of removing carbon dioxide (CO2) from the atmosphere and storing it in various reservoirs, and in this case, in trees and forests.

i-Tree is a suite of software tools developed by the United States Forest Service that provides a range of resources for assessing and managing forests. i-Tree Eco is one of the more used tools from …

Copus Profiles Paper Data, Jamie Jensen, Rebecca L. Sansom, Jennifer B. Nielson, Richard E. West, Geoffrey Wright, Bryn St. Clair

ScholarsArchive Data

COPUS profile data, interview transcripts

Public Health Importance Of Preventive Measures For Salmonella Tennessee And Salmonella Typhimurium Strain Lt2 Biofilms, Simen Asefaw, Sadiye Aras, Md Niamul Kabir, Sabrina Wadood, Shahid Chowdhury, Aliyar Cyrus Fouladkhah

Biology Faculty Research

Various serovars of Salmonella had been the subject of research for over 150 years; nonetheless, the bacterium has remained an important pathogen of public health concern to date. The tremendous ability of Salmonella to form biofilms on biotic and abiotic surfaces is an important underlying reason for the prevalence of this opportunistic pathogen in healthcare, manufacturing, and the food chain. The current study illustrates that using very common industrial antimicrobial treatments at the highest concentrations suggested by the manufacturers is only efficacious against planktonic and one-day mature biofilms of the pathogen while exhibiting a lack of efficacy for complete removal …

Ethical Issues And Standards Of Responsible Research Conduct And Monitoring In An Adventist Institution Of Higher Learning - The Babcock Experience, Kayode O. Ogunwenmo, Godswill N. Anyasor, Grace O. Tayo

Adventist Human-Subject Researchers Association

Ethical issues and standards of responsible research conduct involving human participants are important considerations in any institution of higher learning and in particular Adventist institutions. Research conduct and ethics are reviewed and approved before they begin by the Babcock University Health Research Ethics Committee (BUHREC)

A Baseline Assessment Of Migratory And Resident Bird Use Of A Prairie Restoration Site In Eastern Washington, Madilyn J. Odiorne, Brynn A. Richey, Ruby L. Hammond

2023 Symposium

Prairies, and other types of grassland ecosystems, have suffered some of the most profound losses worldwide, due to anthropogenic factors such as fossil fuel extraction, agriculture, and climate change. Likewise, organisms inhabiting grassland ecosystems have become extirpated across much of their historical range, not the least of which has been a 50% decline in grassland birds since the 1960s. In response to losses of intact prairie in eastern Washington, a 120-ac site has been established on the EWU campus to regenerate native prairie and monitor changes in the ecosystem as native plants recolonize and replace non-natives. Because birds are an …

Effects Of Climate Change On Human Health, Sara El Houzaly, Richa Gupta

Publications and Research

The effects of climate change are evident worldwide as average global land and air temperatures have been rising, glaciers and ice sheets are shrinking with the concomitant rise in sea levels, extreme weather events have become more frequent, and oceans are warming and acidifying. Humanity is facing a big environmental challenge which not only impacts our habitat but will also have ramifications on our health. The present review describes a detailed examination of the scientific evidence proving the relationship between climate change and various fatal human diseases in different geographical regions. Our findings indicate that variations in the patterns of …

Identification And Initial Characterization Of Hfq-Associated Srnas In Histophilus Somni Strain 2336, Bindu Subhadra, Dianjun Cao, Roderick Jensen, Clayton Caswell, Thomas J. Inzana

Faculty Publications - Biological Sciences

Small RNAs (sRNA), in association with the global chaperone regulator Hfq, positively or negatively regulate gene expression in bacteria. For this study, Histophilus somni sRNAs that bind to Hfq were identified and then partially characterized. The Hfq-associated sRNAs in H. somni were isolated and identified by co-immunoprecipitation using anti-Hfq antibody, followed by sRNA sequencing. Sequence analysis of the sRNA samples identified 100 putative sRNAs, out of which 16 were present in pathogenic strain 2336, but not in non-pathogenic strain 129Pt. Bioinformatic analyses suggested that the sRNAs HS9, HS79, and HS97 could bind to many genes putatively involved in virulence/biofilm formation. …

Characterization Of A Novel Polyextremotolerant Fungus, Exophiala Viscosa, With Insights Into Its Melanin Regulation And Ecological Niche, Erin C. Carr, Quin Barton, Sarah Grambo, Mitchell Sullivan, Cecile M. Renfro, Alan Kuo, Jasmyn Pangilinan, Anna Lipzen, Keykhosrow Keymanesh, Emily Savage, Kerrie Barry, Igor V. Grigoriev, Wayne R. Riekhof, Steven D. Harris

School of Biological Sciences: Faculty Publications

Black yeasts are polyextremotolerant fungi that contain high amounts of melanin in their cell wall and maintain a primar yeast form. These fungi grow in xeric, nutrient depletes environments which implies that they require highly flexible metabolisms and have been suggested to contain the ability to form lichen-like mutualisms with nearby algae and bacteria. However, the exact ecological niche and interactions between these fungi and their surrounding community are not well understood. We have isolated 2 novel black yeasts from the genus Exophiala that were recovered from dryland biological soil crusts. Despite notable differences in colony and cellular morphology, both …

Pathogenicity Of Multiple Providencia Species (Enterobacteriales: Morganellaceae) To The Mass-Reared Mexican Fruit Fly (Diptera: Tephritidae), Bacilio Salas, Hugh E. Conway, Don C. Vacek, Christopher Vitek, Erin Schuenzel

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Mexican fruit fly (Anastrepha ludens (Loew)) (Diptera: Tephritidae) represents a major threat to fruit production in the Western Hemisphere. Sterile insect technique is used to suppress and eradicate wild populations. Success of this control method necessitates weekly production of hundreds of millions of flies, their sterilization by irradiation, and their aerial release. Diet needed to produce large fly numbers are conducive to the spread of bacteria. Pathogenic bacteria were isolated from 3 rearing facilities and from multiple sources: eggs, larvae, pupae and spent diet, and were found to include some isolates identified to the genus Providencia (Enterobacteriales: Morganellaceae). We …

Does Artificial Lighting Cause Sea Turtle Hatchling Disorientations?, Kate Hickey

Biology Student Scholarship

Sea turtle hatchlings run into obstacles from the minute they emerge from their shell. They have a 1 in 1,000 survival rate and new obstacles are on the horizon. Coastal development is increasing and is not planning on slowing down. It supports and funds tourism, but has some negative implications on the wildlife that uses this area, like sea turtles. A particular problem with development is the artificial lighting it emits which is effecting sea turtles nesting. When the hatchlings emerge from the nest, they use the horizon and moon to guide them in the direction of the sea. The …

The Effects Of Urban Landscape, Soundscape, And Light Pollution On Avian Diversity And Nesting In South San Antonio, Texas, Alfredo Llamas

Masters Theses (Archived)

As critical habitat continues to dwindle due to the expansion of urbanization, alternative habitat in urban ecosystems becomes a necessary natural resource for the survival of birds. In the last decade, local San Antonio environmental authorities have focused their efforts on restoring the San Antonio Mission Reach. Ecological revitalization of the San Antonio Mission Reach could increase avian, and flora biodiversity with ongoing restoration, yet how birds use restored habitat has not been assessed. Additionally, south of the Reach, two more peri-urban sites have great potential to be high quality habitat for birds but have not been surveyed for nesting …

The Effects Of Anthropogenic Sensory Pollution On Arthropod Diversity And Pollinator Behavior, Sierra Dee Rodriguez, Jennifer N. Phillips Phd

Masters Theses (Archived)

Pollinators provide a key ecological function in terrestrial ecosystems, yet in recent years, they have encountered unprecedented declines, likely due to anthropogenic change. Light and noise pollution, which can interfere with the visual and auditory systems of animals that regulate daily behaviors, are important factors to consider when communities are encroached by human development. While many researchers have looked at how vertebrate species behaviorally react to human caused habitat degradation and sensory pollution, little is known about how invertebrates, including arthropod pollinators, are affected, and whether there is a negative cascading effect on the plants that they pollinate. This research …

The Effect Of Nuclear Power On Carbon Intensity, Lukas Mullaney

Biology Student Scholarship

The world is currently facing one of the biggest threats to the environment in its history: the warming of the Earth’s surface due to climate change. One major contributor is the release of greenhouse gases, such as carbon dioxide, into the atmosphere by humans. To reduce these emissions, countries are making a concerted effort to invest in more sustainable energy sources. Nuclear power is one green energy source that can potentially support the transition to lower carbon emissions. Nuclear power plants release no carbon emissions during the generation of electricity. The only emissions are a result of maintenance, such as …

Effect Of Natural Disasters On Coastal Human Populations Of The Southeastern U.S., Caitlin Mchugh

Biology Student Scholarship

Due to climate change, extreme weather events and natural disasters are becoming more prevalent, and the severity of these events is increasing (Sheldon & Zhan, 2022). Over the last 40 years, the number of billion-dollar natural disasters has gone up. The U.S, averaged 3 billion-dollar disasters per year in the 1980s compared to the average 13 per year in the 2010s (USAFacts, 2023). With natural disasters comes loss of life, infrastructure, and resources that can leave a physical and economic toll on communities for many years if not generations. While some global studies have found that natural disasters increase households’ …

The Effect Of Water Temperature On Tiger Shark Location, Philip Gelso

Biology Student Scholarship

The tiger shark is a keystone species in its ecosystem. As an apex predator, the tiger shark keeps the entire ecosystem in balance such as maintaining seagrass and coral reef habitats. The rise of ocean surface temperatures have become an issue over the past decades due to the increase in energy from the sun trapped by greenhouse grasses. This change in ocean surface temperature can have detrimental impacts on the ocean environment and the life cycles of many species including the tiger shark. Therefore, this project evaluates the change in location of tiger sharks in relation to water temperature.BIO …

Element Levels In Soil Depend On Elevation, Sean Harris

Biology Student Scholarship

Elements, such as arsenic, copper, phosphorus, and calcium, in soil can help biological processes if content levels are not too low or excessive. Arsenic in soil is toxic at high levels and so too much is harmful to vegetation. Copper is important for plants because it helps with chlorophyll and seed production. Phosphorus helps with plant growth, especially for new seedlings. Calcium in soil is not completely needed at high levels, but it does strengthen plants’ health. However, with factors such as different environments, average precipitation levels, and elevation levels in different counties in the Northeast, element content level differ. …