Biology Commons^™

Effects Of Measurement Methods And Growing Conditions On Phenotypic Expression Of Photosynthesis In Seven Diverse Rice Genotypes, Megan Reavis, Larry C. Purcell, Andy Pereira, Kusum Naithani

Biological Sciences Faculty Publications and Presentations

Introduction: Light response curves are widely used to quantify phenotypic expression of photosynthesis by measuring a single sample and sequentially altering light intensity within a chamber (sequential method) or by measuring different samples that are each acclimated to a different light level (non-sequential method). Both methods are often conducted in controlled environments to achieve steady-state results, and neither method involves equilibrating the entire plant to the specific light level.

Methods: Here, we compare sequential and non-sequential methods in controlled (greenhouse), semi-controlled (plant grown in growth chamber and acclimated to field conditions 2-3 days before measurements), and field environments. We selected …

The Minimal Suf System Is Not Required For Fe–S Cluster Biogenesis In The Methanogenic Archaeon Methanosarcina Acetivorans, Jasleen Saini, Thomas M. Deere, Daniel J. Lessner

Biological Sciences Faculty Publications and Presentations

Iron–sulfur (Fe–S) proteins are essential for the ability of methanogens to carry out methanogenesis and biological nitrogen fixation (diazotrophy). Nonetheless, the factors involved in Fe–S cluster biogenesis in methanogens remain largely unknown. The minimal SUF Fe–S cluster biogenesis system (i.e., SufBC) is postulated to serve as the primary system in methanogens. Here, the role of SufBC in Methanosarcina acetivorans, which contains two sufCB gene clusters, was investigated. The CRISPRi-dCas9 and CRISPR-Cas9 systems were utilized to repress or delete sufC1B1 and sufC2B2, respectively. Neither the dual repression of sufC1B1 and sufC2B2 nor the deletion of both sufC1B1 and sufC2B2 …

Guar-Based Injectable Hydrogel For Drug Delivery And In Vitro Bone Cell Growth, Humandra Poudel, Ambar R. Rangumagar, Pooja Singh, Adeolu Oluremi, Nawab Ali, Fumiya Watanabe, Joseph Batta-Mpouma, Jin-Woo Kim, Ahona Ghosh, Anindya Ghosh

Chemistry & Biochemistry Faculty Publications and Presentations

Injectable hydrogels offer numerous advantages in various areas, which include tissue engineering and drug delivery because of their unique properties such as tunability, excellent carrier properties, and biocompatibility. These hydrogels can be administered with minimal invasiveness. In this study, we synthesized an injectable hydrogel by rehydrating lyophilized mixtures of guar adamantane (Guar-ADI) and poly-β-cyclodextrin (p-βCD) in a solution of phosphate-buffered saline (PBS) maintained at pH 7.4. The hydrogel was formed via host-guest interaction between modified guar (Guar-ADI), obtained by reacting guar gum with 1-adamantyl isocyanate (ADI) and p-βCD. Comprehensive characterization of all synthesized materials, including the hydrogel, was performed using …

Deepening Undergraduate Students’ Thinking About Central Dogma Through Problem-Based Learning, Katherine Alberta Sharp, Rebecca Mc Nall Krall, Jeffrey Chalfant

Teacher Education and Certification Faculty Research & Creative Works

A Common Belief among Pre-Medical and Medical Students is that Biochemistry is Not Relevant to Practicing Medicine. the Problem-Based Approach of Case Studies Has Been Used in Medical Education to Scaffold the Application of Content to Clinical Cases, But Few Studies Report on a Similar Use in Undergraduate Biochemistry. Case Studies in Biochemistry and Related Disciplines Have Been Previously Reported as Increasing Learning Motivation and Supporting Depth of Knowledge. Additionally, Students Engaging in Case Studies Outperform Students in Traditional Instruction. the Objective of This Qualitative Case Study Was to Find How the Timing of a Medical Case Study within the …

The Dangers Of Staphylococcus Aureus And Antimicrobial Resistance, Madison Pines

Graduate Student Dissertations, Theses, Capstones, and Portfolios

Methicillin-resistant Staphylococcus aureus (MRSA) is the etiological agent responsible for many problematic infections. The signs and symptoms of an infection caused by MRSA differ based on the route of transmission and type of infection. Staphylococcus aureus can secrete toxins that act as virulence factors and aid host invasion. Obesity, old age, being a health care worker, playing contact sports, living in a crowded place, hospitalization, recent antibiotic use, and HIV patients are more at risk of developing an infection caused by MRSA. An abundance of factors has contributed to antimicrobial resistance, like misuse of antibiotics in clinical and agricultural settings …

Il-15 And Ifn-G Regulation In Murine Nk Cells, Maria Cimpean

Arts & Sciences Graduate Student Theses and Dissertations

Natural killer (NK) cells are innate lymphoid cells that play important roles in antiviral and antitumor responses through their cytotoxicity mechanisms and the ability to modulate immune responses through production of cytokines such as IFN-g. NK cells are able to execute these responses rapidly and without prior sensitization due to their germline-encoded receptors. Recent work in the field of immunometabolism has highlighted the impact that changes in cellular metabolism can have on immune cell function, including NK cell effector functions. Our lab has previously reported activation-specific metabolic requirements for IFN-g production by resting murine NK cells in vitro, which IL-15 …

Sex In The Noisy City: Changes In Vocal Behavior Patterns And Dopamine Neurochemistry In The Auditory System Of Oyster Toadfish (Opsanus Tau), Kelsey N. Hom

Dissertations, Theses, and Capstone Projects

Intense anthropogenic noise can induce stress, behavioral changes, and even hearing loss in aquatic animals. However, there are few studies that have demonstrated how ecologically relevant noise affects aquatic life, and even fewer studies on the effect of noise on animals that require sound for reproduction. The oyster toadfish (Opsanus tau) is an excellent animal model to examine the effects of anthropogenic noise on behavior and neurochemistry since they use a reproductive call to find mates and live near urban areas like New York City. Despite living alongside the most populous city in the United States, these vocal …

Environmental Isolate Developing Antibiotic Resistance By Complementation, Mary Ridgeway, Ashley Fink, David Mitchell

Biology Faculty Publications

Antibiotic resistance is a growing concern within the scientific community. With few new antibiotics being introduced and an increasing number of resistant microbes, routine bacterial infections are becoming more difficult to treat in clinics and hospitals. The purpose of this study is to compare the ability of two environmental isolates – Staphylococcus aureus (S. aureus) and Exiguobacterium undae (E. undae) to grow in solutions of increasing concentrations of tetracycline and ciprofloxacin. After the bacteria showed grow in the solutions, antibiotic susceptibility was tested by examining zones of inhibition on Trypticase Soy Agar (TSA) plates. Our results …

Comparative Polar And Lipid Plasma Metabolomics Differentiate Kshv Infection And Disease States, Sara R. Privatt, Camila Pereira Braga, Alicia Johnson, Salum J. Lidenge, Luke Berry, John R. Ngowi, Owen Ngalamika, Andrew G. Chapple, Julius Mwaiselage, Charles Wood, John T. West, Jiri Adamec

School of Biological Sciences: Faculty Publications

Background Kaposi sarcoma (KS) is a neoplastic disease etiologically associated with infection by the Kaposi sarcoma-associated herpesvirus (KSHV). KS manifests primarily as cutaneous lesions in individuals due to either age (classical KS), HIV infection (epidemic KS), or tissue rejection preventatives in transplantation (iatrogenic KS) but can also occur in individuals, predominantly in sub-Saharan Africa (SSA), lacking any obvious immune suppression (endemic KS). The high endemicity of KSHV and human immunodeficiency virus-1 (HIV) co-infection in Africa results in KS being one of the top 5 cancers there. As with most viral cancers, infection with KSHV alone is insufficient to induce tumorigenesis. …

Comparative Polar And Lipid Plasma Metabolomics Differentiate Kshv Infection And Disease States, Sara R. Privatt, Camila Pereira Braga, Alicia Johnson, Salum J. Lidenge, Luke Berry, John R. Ngowi, Owen Ngalamika, Andrew G. Chapple, Julius Mwaiselage, Charles Wood, John T. West, Jiri Adamec

School of Biological Sciences: Faculty Publications

Background Kaposi sarcoma (KS) is a neoplastic disease etiologically associated with infection by the Kaposi sarcoma-associated herpesvirus (KSHV). KS manifests primarily as cutaneous lesions in individuals due to either age (classical KS), HIV infection (epidemic KS), or tissue rejection preventatives in transplantation (iatrogenic KS) but can also occur in individuals, predominantly in sub-Saharan Africa (SSA), lacking any obvious immune suppression (endemic KS). The high endemicity of KSHV and human immunodeficiency virus-1 (HIV) co-infection in Africa results in KS being one of the top 5 cancers there. As with most viral cancers, infection with KSHV alone is insufficient to induce tumorigenesis. …

Go Big Or Go Home: Divergence In Morphology And Behavior Between Island And Islet Populations Of The San Cristóbal Lava Lizard (Microlophus Bivittatus), Emilio J. Mancero

Masters Theses

Rapid divergence in body size is a well-documented phenomenon among island species, associated with macroevolutionary processes of diversification and adaptive radiation. The effect of insularity in determining larger body size as an optimal phenotype is primarily attributed to lower predation and greater intraspecific competition on islands. Our study examined interpopulation variation in morphology, social behavior and predator avoidance in Galápagos lava lizards endemic to San Cristóbal island (Microlophus bivittatus), and the nearby islet Isla Lobos. Islet populations have fewer competitors than those on the island, where native and introduced predators are abundant. We simulated interactions with predators and …

Environmental Bacteriophage Presence In Drainage Ponds At Coastal Carolina University, Hailey Oldfield, Alexei E. Chesnutwood, Gabriella A. Caldwell, Shiraz C. Cohen, Paul E. Richardson

Journal of the South Carolina Academy of Science

No abstract provided.

Developing A Safe And Effective Papillomavirus Screen To Be Used On College Students At A South Carolina University, Owen R. Smith, Nicole E. Frantz, Emily E. Bishop, Rahjai G. Thomas, Paul E. Richardson

Journal of the South Carolina Academy of Science

No abstract provided.

Behind The Headlines: Strategies For Critical Consumption Of Science News, Mackenzie Gerringer

Myth and Science, 2023-24

In this discussion-based class, learners will: 1) understand the paths information takes from the lab bench or the field to news headlines, 2), reflect upon how misinformation and disinformation impact society, 3) develop individual strategies for critical media consumption, and 4) practice productive communication about science news, integrating perspectives from multiple disciplines. Bring your ideas, let's strategize!

Table Of Contents

Journal of the South Carolina Academy of Science

No abstract provided.

Celebrating Leeuwenhoek’S Life 300 Years Later, Alan L. Gillen

Faculty Publications and Presentations

Antony van Leeuwenhoek entered eternity 300 years ago (August 26, 1723). He made hundreds of discoveries with his simple microscope. Perhaps his most notable discovery was of bacteria and its many shapes. He found great joy in God [http://answersingenesis.org/god/] ’s smallest creatures. I believe that his curiosity about the world, fueled by his belief in biblical creation [http://answersingenesis.org/creation/] , led to his discovery of bacteria. In a similar manner, his curiosity of blood led to his discovery of red corpuscles and capillaries. He remained a curious man until the last days of his life 300 years …

Anterior Chamber Depth In Mice Is Controlled By Several Quantitative Trait Loci, Demelza R. Larson, Allysa J. Kimber, Kacie J. Meyer, Michael G. Anderson

Biology Faculty Publications

Anterior chamber depth (ACD) is a quantitative trait associated with primary angle closure glaucoma (PACG). Although ACD is highly heritable, known genetic variations explain a small fraction of the phenotypic variability. The purpose of this study was to identify additional ACD-influencing loci using strains of mice. Cohorts of 86 N2 and 111 F2 mice were generated from crosses between recombinant inbred BXD24/TyJ and wild-derived CAST/EiJ mice. Using anterior chamber optical coherence tomography, mice were phenotyped at 10–12 weeks of age, genotyped based on 93 genome-wide SNPs, and subjected to quantitative trait locus (QTL) analysis. In an analysis of ACD among …

Antimelanoma Activities Of Fused Thiazole Derivatives, Sanjay Adhikary

Student Theses and Dissertations

Melanoma, a fatal type of skin cancer, is still incurable. To develop a possible cure, we synthesized fused thiazole derivatives, and found them to be potent anti-melanoma agents both in vitro and in vivo. Thiazolo ethisterone derivatives were remarkably cytotoxic to melanoma cell lines and inhibited colonization of oncogenic cells. Compounds, in vitro, inhibited three key mechanisms of metastasis; cell migration, adhesion, and invasiveness. The compounds caused mild G2/M phase mitotic cell cycle arrest and induced moderate apoptosis. 3, 4-Dihydroxy substituted thiazolo ethisterone (ET32) upregulated beta-Parvin (PARVB) expression (both mRNA and protein expressions) with a log2 fold change value around …

The Return Of Malaria To The Usa: Did God Create Parasites To Make Us Sick?, Alan L. Gillen

Faculty Publications and Presentations

Summer 2023, the Centers for Disease Control and Prevention reported several cases of locally acquired malaria in Florida, Texas, and Maryland, meaning that patients were infected within the US—the first such cases in over two decades (CDC 2023). The significance of the cases and how individuals and public health officials should respond to the situation is still unknown. The CDC is collaborating with state health departments on an investigation of seven locally acquired cases of Plasmodium vivax malaria in Sarasota County, Florida, and one case in Cameron County, Texas, and Maryland near Washington DC. There is no evidence to suggest …

A Human Stat3 Gof Variant Alters T Cell Function To Drive Skin Inflammation, Kelsey Adele Toth

Arts & Sciences Graduate Student Theses and Dissertations

Inborn errors of immunity (IEIs) are disorders caused by monogenic variants that lead to immune deficiency and dysregulation. Although rare, IEIs have shaped our understanding of how single genes function in the immune systems of both humans and mice. The identification of loss-of-function (LOF) and gain-of-function (GOF) variants in the highly conserved signal transducer and activator of transcription (STAT) family molecules have led to discoveries involving how STAT signaling affects immune cell development, differentiation, and the induction and regulation of immune responses. Germline GOF variants in STAT3 cause early-onset multi-organ autoimmunity and immune dysregulation. Patients with STAT3 GOF syndrome have …

Seasonal Top-Down Effects Of Fish On Benthic Macroinvertebrates And Periphyton In A Coldwater Michigan Stream, Travis John Ellens

Masters Theses

Fish can have strong top-down effects on their prey through both direct predation and non-consumptive effects in streams. We conducted manipulative field experiments to test the strength of fish predation on benthic macroinvertebrates at the patch scale in Stegman Creek. Stegman Creek is a small (0.39 m³/s at baseflow), groundwater-fed stream in western Michigan with abundant mottled sculpin (Cottus bairdii) and brown trout (Salmo trutta) acting as benthic predators. We hypothesized that fish predation decreases macroinvertebrate density, thereby increasing periphyton biomass through a reduction in density of grazing macroinvertebrates. We placed paired predator-exclusion cages …

Morphometric Analysis And Biochemical Estimation Of Wild Shrimps (Family: Penaeidae) Found In Coastal Waters Of Pakistan, Noor Us Saher, Syeda Hadiqa Noor

Journal of Bioresource Management

The world recognition of Seafood nutritional value for human consumption remain consistent throughout the time. Different informations and aspects have been studied and considered and generated various data sets but limited informations found about the biochemical concentration of various fishery species caught in the Pakistan. Therefore, the recent study design to evaluate the proximate levels of components in the edible component (flesh) of commercial shrimp species were studied. Four shrimp species; Fenneropenaeus indicus, Metapenaeopsis stridulans, Metapenaeus stebbingi, and Parapenaeopsis stylifera were selected for the assessment of proximate composition. The selected shrimp species were collected from the fishery catch of Korangi …

Unraveling The Molecular Basis Of Zinc Cluster Transcription Factor Specificity: A Comprehensive Study Of Half-Site Promoter Binding Interactions And Their Role In Gene Expression Regulation, Pamela Samantha Recio

Arts & Sciences Graduate Student Theses and Dissertations

The regulation of gene expression relies on the complex interplay of transcription factors (TFs) that interact with DNA to control gene activity. Despite extensive research efforts, accurately predicting crucial aspects of the transcriptional process, such as TF occupancy in vivo, remains a challenging task. Existing thermodynamic models of TF function often fall short in explaining experimental observations, suggesting the presence of undiscovered biological mechanisms. This dissertation aims to unravel the underlying principles governing the binding specificity of Zinc cluster TFs and is organized into two chapters. Chapter 1 offers a comprehensive overview of transcriptional regulation in yeast, highlighting current TF …

Effect Of Age At Injury On Neuroinflammatory Response, Microstructural Outcomes, And Function Following Traumatic Brain Injury, Sydney J. Oswalt Reitz

Arts & Sciences Graduate Student Theses and Dissertations

Traumatic brain injury (TBI) is a significant public health concern. Elderly individuals are more likely to be hospitalized and die from a TBI than younger victims, and experience worse outcomes along a series of clinical and functional endpoints. Studies exploring the mechanisms responsible for these outcome disparities are limited. As aging has been demonstrated to enhance baseline neuroinflammatory profile and is associated with synaptopathic neurodegenerative conditions linked to TBI, this thesis study sought to better characterize the relationship between aging-related neuroinflammation, microstructural—including synaptic—endpoints, and functional outcome following TBI. To this end, mice were subjected to diffuse and focal experimental brain …

Inter-Areal Communication In Posterior Parietal Cortex Supporting Eye-Hand And Bimanual Coordination, Jung Uk Kang

Arts & Sciences Graduate Student Theses and Dissertations

Understanding inter-areal communication is crucial for systems neuroscience. Much of the processing in the brain involves communication between different areas. Sensory areas must send information to motor areas, and motor areas must communicate with each other if different body parts are to be coordinated. For example, coordinating movements of the two arms likely requires interactions between motor areas in the two hemispheres. We therefore hypothesize that bimanual and eye-hand coordination relies on interhemispheric communication, and the most direct path for information exchange between the two hemispheres is through the corpus callosum. By reversibly blocking the callosal pathways connecting the left …

Online Data Transmission Reduction Scheme For Energy Conservation In Wireless Video Sensor Networks, Iman Kadhum Abbood, Ali Kadhum Idrees

Karbala International Journal of Modern Science

Wireless Video Sensor Networks (WVSNs) are networks of low-cost, low-power camera sensor nodes. These nodes communicate locally and process information to meet an application's goal. WVSNs are extensively used in diverse monitoring applications, such as security, military, industrial, medical, and environmental monitoring. However, the transmission of large amounts of data collected by video sensor nodes in WVSNs poses challenges in terms of energy consumption, bandwidth usage, and network congestion. Reducing energy for processing and transmitting data in WVSNs is difficult due to the huge amount of sensed data in real-time. To address this issue, this paper proposes an Online Data …

Biogenesis Synthesis Of Zno Nps: Its Adsorption And Photocatalytic Activity For Removal Of Acid Black 210 Dye, Zahraa A. Najm, Mohammed A. Atiya, Ahmed K. Hassan

Karbala International Journal of Modern Science

This study investigated the treatment of textile wastewater contaminated with Acid Black 210 dye (AB210) using zinc oxide nanoparticles (ZnO NPs) through adsorption and photocatalytic techniques. ZnO NPs were synthesized using a green synthesis process involving eucalyptus leaves as reducing and capping agents. The synthesized ZnO NPs were characterized using UV-Vis spectroscopy, SEM, EDAX, XRD, BET, Zeta potential, and FTIR techniques. The BET analysis revealed a specific surface area and total pore volume of 26.318 m²/g. SEM images confirmed the crystalline and spherical nature of the particles, with a particle size of 73.4 nm. A photoreactor was designed …

Dna Barcoding Of Springsnails (Mollusca, Gastropoda, Caenogastropoda) Endemic To The Trans-Pecos Region Of Texas (Usa), Kathryn E. Perez, Vanessa Saenz, Natalia Salazar-Lozano, Benjamin F. Schwartz, Benjamin T. Hutchins

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

In desert environments, unique communities depend on groundwater from springs, including a diverse radiation of small (<5 >mm) snails found in the desert across the southwestern United States. Nearly all springsnail species are considered critically imperiled with their existence depending on maintenance of spring-flows in regions of declining water availability. Extant, endemic springsnails in the Trans-Pecos region of Texas include one species of Pseudotryonia Hershler, 2001, five nominal Tryonia W. Stimpson, 1865 (Cochliopidae) and seven Pyrgulopsis Call & Pilsbry, 1886 (Hydrobiidae). Four of these are classified as endangered under the US Endangered Species Act. Surveys for springsnails were conducted at …

Making The Error Bar Overlap Myth A Reality: Comparative Confidence Intervals, Frank S. Corotto

Georgia Journal of Science

Many interpret error bars to mean that if they do not overlap the difference is statistically “significant”. This overlap rule is really an overlap myth; the rule does not hold true for any conventional type of error bar. There are rules of thumb for estimating P values, but it would be better to show error bars for which the overlap rule holds true. Here I explain how to calculate comparative confidence intervals which, when plotted as error bars, let us judge significance based on overlap or separation. Others have published on these intervals (the mathematical basis goes back to John …

Investigating The Salinity Tolerance Of The Swordtail (Xiphophorus Hellerii), Alexandra Megan Krak

College of Science and Health Theses and Dissertations

The swordtail, Xiphophorus hellerii, is a freshwater fish species native to Mexico and Central America and is commonly used in the tropical aquarium trade. Swordtails have been shown to have limited survival in 6 ‰ salinity (Nanda et al., 2016), suggesting they may have a greater salinity tolerance than previously expected. Using a gradual acclimation method, we examined the salinity tolerance and swim performance of this species. Freshwater-reared female swordtails were housed in 29-gallon aquaria. A control group was held in freshwater throughout the experiment. For the experimental group, the salinity was increased by 2 ‰ every week until 30 …