Biology Commons^™

The Effects Of Ionizing Radiation On Domestic Dogs: Ancestry And Genetic Structure Of Free-Roaming Dog Populations In Chernobyl, Ukraine, Gabriella Jean Spatola

Theses and Dissertations

This thesis is concerned with the effects of ionizing radiation on domestic dogs (Canis lupus familiaris) which were commonly used as laboratory subjects during the era of atomic bomb testing (1950s - 1980s). Early laboratory studies on radiation effects in dogs provided important foundations of knowledge for research that has more recently shifted to natural populations exposed to ionizing radiation from nuclear accidents. A unique group of free-roaming dogs reside in an environment polluted by radioactive contamination deposited during the Chernobyl nuclear disaster of 1986, providing one such opportunity to study the effects of ionizing radiation on dogs …

Of Mutualism And Migration: Will Interactions With Novel Ericoid Mycorrhizal Communities Help Or Hinder Northward Rhododendron Range Shifts?, Taryn L. Mueller, Elena Karlsen-Ayala, David A. Moeller, Jesse Bellemare

Biological Sciences: Faculty Publications

Rapid climate change imperils many small-ranged endemic species as the climate envelopes of their native ranges shift poleward. In addition to abiotic changes, biotic interactions are expected to play a critical role in plant species’ responses. Below-ground interactions are of particular interest given increasing evidence of microbial effects on plant performance and the prevalence of mycorrhizal mutualisms. We used greenhouse mesocosm experiments to investigate how natural northward migration/assisted colonization of Rhododendron catawbiense, a small-ranged endemic eastern U.S. shrub, might be influenced by novel below-ground biotic interactions from soils north of its native range, particularly with ericoid mycorrhizal fungi (ERM). We …

The Role Of The Prodomain In The Folding Of Carboxypeptidase A1, Masy Domecillo

Honors Theses

Carboxypeptidase A1 (CPA1) is an enzyme utilized in digestion. CPA1 contains a prodomain region, which must be cleaved for enzymatic function. The prodomain region has been hypothesized to be necessary for structural stability, as previous studies were unable to produce a functional CPA1 protein without the prodomain region. However, the recent discovery of a related enzyme, Carboxypeptidase 0 (CP0), which does not have a prodomain yet functions enzymatically, challenges this assertion. To determine if the prodomain is essential to the folding of CPA1, an HA-tag was added for detection, and the prodomain was deleted via PCR. A Western blot was …

Analysis Of Invasion Proteins Mmp2, Mmp9, Adam12, And Adam17 In Glioblastoma U87mg Cells Treated With Anti-Cancer Compound 3,4-Dimethoxybenzaldehyde, Andras Muranyi

Honors Theses

This research tested the effectiveness of novel compound 3,4-dimethoxybenzaldehyde, demonstrated to have anti-cancer properties. U87MG Glioblastoma cells were exposed to the compound at its LC50 concentration, then processed to collect proteins from the cells. Proteins were analyzed via Western blotting for specific protein levels of matrix metalloproteinase 2 and 9 (MMP) and disintegrin and metalloprotease 12 and 17 (ADAM). Previous research indicates these proteins are involved in the invasive properties of glioblastoma cells. Westerns were quantified with ImageJ and compared using a one-way ANOVA. Results indicate the compound has minimal effect upon the expression of MMP2, MMP9, ADAM12, ADAM17 proteins.

Reassessing The Parameters Of Phonotaxis In Female Acheta Domesticus, Jewel Murray

Honors Theses

To study phonotaxis in crickets a trackball system has been traditionally used, which consists of a spherical, air supported styrofoam ball placed in a soundproof container in which crickets are tethered to. Two computer mice detect its movement. A speaker is at one end of the container, and it is connected to a computer which generates calls with pre-set parameters. Once a cricket is attached to the trackball system, it can freely navigate toward the source of the sound, while the styrofoam ball remains stationary.

This apparatus has been used to measure the walking distance and angular orientation. When evaluating …

Phonotactic Tuning In Female Cricket Acheta Domesticus, Jessica Rim

Honors Theses

Phonotactic behavior of female cricket Acheta domesticus has been shown to vary among individuals. While some females are finely tuned to calls with syllable periods in the natural range of conspecific males, others respond phonotactically to a wider range of syllable periods and therefore lack the ability to discriminate between attractive and unattractive calls. When females are exposed to males but prevented from mating, their ability to discriminate attractive calls is reduced, suggesting that factors other than mating alter phonotactic behavior.

This study evaluated the effect of male exposure on females’ phonotactic tuning and responsiveness in relation to underlying neural …

Phonotactic Tuning In Female Cricket Acheta Domesticus, Jessica Rim

Honors Theses

Phonotactic behavior of female cricket Acheta domesticus has been shown to vary among individuals. While some females are finely tuned to calls with syllable periods in the natural range of conspecific males, others respond phonotactically to a wider range of syllable periods and therefore lack the ability to discriminate between attractive and unattractive calls. When females are exposed to males but prevented from mating, their ability to discriminate attractive calls is reduced, suggesting that factors other than mating alter phonotactic behavior. This study evaluated the effect of male exposure on females’ phonotactic tuning and responsiveness in relation to underlying neural …

Interspecific And Ontogenic Differences In The Molar Occlusal Surfaces Of Manatees (Sirenia: Trichechidae), Lyle Goulbourne

Honors Theses

While much is known regarding limitless horizontal replacement of manatee teeth, the morphology and topography of the teeth have not been formally described, nor have interspecific differences and ontogenic changes in relative tooth size been described in detail. To physically describe the teeth, photographs of the molars from West Indian manatees (Trichechus manatus) and Amazonian manatees (T. inunguis) were taken and the features of the teeth were identified. To compare tooth size differences, the area of the posterior-most molar in occlusion was measured from both the upper and lower molars of the manatee skulls from West Indian and Amazonian manatees. …

Strain-Specific Transcriptional Responses Overshadow Salinity Effects In A Marine Diatom Sampled Along The Baltic Sea Salinity Cline, Eveline Pinseel, Teofil Nakov, Koen Van Den Gerge, Kala M. Downey, Kathryn Judy, Olga Kourtchenko, Anke Kremp, Elizabeth C. Ruck, Conny Sjöqvist, Mats Töpel, Anna Godhe, Andrew J. Alverson

Biological Sciences Faculty Publications and Presentations

The salinity gradient separating marine and freshwater environments represents a major ecological divide for microbiota, yet the mechanisms by which marine microbes have adapted to and ultimately diversified in freshwater environments are poorly understood. Here, we take advantage of a natural evolutionary experiment: the colonization of the brackish Baltic Sea by the ancestrally marine diatom Skeletonema marinoi. To understand how diatoms respond to low salinity, we characterized transcriptomic responses of acclimated S. marinoi grown in a common garden. Our experiment included eight strains from source populations spanning the Baltic Sea salinity cline. Gene expression analysis revealed that low salinities …

Elucidation Of The Interaction Between Hemorphins And Targets In The Renin-Angiotensin System, Amie Jobe

Theses

Hemorphins, short bioactive peptides produced by the enzymatic cleavage of the hemoglobin β-chain, exhibit anti-hypertensive effects via the inhibition of the angiotensin-1 converting enzyme (ACE1), a key component of the renin-angiotensin system (RAS) that governs blood pressure regulation. ACE1 and its homolog ACE2, which is also involved in the RAS, share significant similarity in their catalytic domains. The main objective of this work was to identify and compare the molecular mechanisms that underlie the interaction of hemorphins of camels and that of other mammals with ACE1 and ACE2. In silico docking and molecular dynamics simulations were employed, and in vitro …

A Computational Assessment Of The Allosteric Modulation Of Gabaa Receptor, Abdel Rahman Atef Aly

Theses

γ-aminobutyric acid (GABA) type A receptor (GABA_AR) is a pentameric ligand gated ion channel and a member of the Cys-loop superfamily. It is targeted by several clinically significant allosteric modulators. The role of individual subunits of the receptor has been very extensively studied. However, the exact molecular pathway upon which the receptor is activated remains elusive. The main objective of this study was to probe the molecular activation pathway for the orthosteric GABA and to understand how two of the most well-established positive (PAM) and negative (NAM) allosteric modulators tend to modulate the receptor. Three independent long scale …

Species Diversity And Barcoding Of Macroinvertebrates From The San Antonio River, Gabrielle Silva

Student Research Symposium 2022 (Archived)

Macroinvertebrates are important biological indicators of health and ecological change within aquatic ecosystems. Macroinvertebrate diversity of the San Antonio (SA) River Watershed (Texas), which traverses rural and urban regions (Bexar County, TX), remains understudied compared to vertebrate counterparts of economic and conservation importance. The SA River hosts a diversity of crustaceans (crayfish), insects (beetles, dragonflies), annelids (leeches), and unidentified larvae at intermediate developmental stages. To improve ecological records of the SA River, an integrative approach is used to establish a reference macroinvertebrate species inventory and a genetic barcoding database (mitochondrial COI and/or 16S rRNA) for the SA River Mission Reach …

Sex-Specific Effects Of Hatching Order On Nestling Baseline Corticosterone In A Wild Songbird, Madison A. Rittinger, Rachel M. Bowden, Logan A. Sauers, Ryan T. Paitz, Christine J. Poppe, Charles F. Thompson, Scott K. Sakaluk

Faculty Publications – Biological Sciences

Variation in nestling growth and survival is often influenced by hatching order, with first-hatched offspring having an advantage over later-hatched younger siblings. In house wrens (Troglodytes aedon), this effect of hatching order is especially evident in asynchronously hatched broods and can lead to sex-specific differences in the size and condition of nestlings. Females appear to allocate the sex of their offspring across the laying order to capitalize on these differences. We hypothesized that levels of circulating corticosterone, the primary metabolic hormone in birds, mediates these sex-specific effects in nestlings. We predicted that: i) baseline levels of corticosterone in nestlings should …

Screening Commercial Entomopathogenic Fungi For The Management Of Diaphorina Citri Populations In The Lower Rio Grande Valley, Texas, Usa, Justin Wendel, Jonathan Cisneros, Stefan Jaronski, Christopher Vitek, Matthew Ciomperlik, Daniel Flores

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Ten strains of entomopathogenic ascomycete fungi, sourced from commercial formulations of blastopore or conidiospore formulations, were tested in 14 different formulations in a primary acquisition/direct spray bioassay against adult Asian citrus psyllid (Diaphorina citri Kuwayama (Hemiptera: Liviidae)). The Cordyceps (Isaria) javanica Apopka 97-C (conidia) strain was used as the standard. A statistical ranking system was established in which top performing pathogenic strains were selected for further screening and eventual field trials. Modified Potter-type spray towers were utilized to deliver a range of doses of viable spores to adult D. citri in an aqueous spray consistent with …

Cover Crops May Exacerbate Moisture Limitations On South Texas Dryland Farms, Stephanie Kasper, Faeqa Mohsin, Lindsey Richards, Alexis Racelis

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Cover crops are a sustainable management tool for mediating weed pressure, reducing soil erosion, and enhancing soil organic carbon (C) and nitrogen (N) levels. Yet, adoption rates across water-limited farms in Texas remain low, especially among producers without irrigation access, due to concerns that cover crop use of soil moisture will negatively impact subsequent cash crop yields. This three-year cover crop trial in a rain-fed sorghum (Sorghum bicolor L.) farm in Lyford, Texas, trialed different cover crop mixes and seeding rates and confirmed that cover cropping leads to significant soil moisture deficits and cash crop failure when rainfall is low …

A Natural Experiment Identifies An Impending Ecological Trap For A Neotropical Amphibian In Response To Extreme Weather Events, Morgan A. Clark, William M. Ota, Sierra J. Smith, Brett K. Muramoto, Summer Ngo, Gabriella E. Chan, Maxwell A. Kenyon, Matthew C. Sturtevant, Max G. Diamond, Gary M. Bucciarelli, Lee B. Kats

All Faculty Open Access Publications

Extreme weather events are predicted to increase as a result of climate change, yet amphibian responses to extreme disturbance events remain understudied, especially in the Neotropics. Recently, an unprecedented windstorm within a protected Costa Rican rainforest opened large light gaps in sites where we have studied behavioral responses of diurnal strawberry poison frogs (Oophaga pumilio) to ultraviolet radiation for nearly two decades. Previous studies demonstrate that O. pumilio selects and defends perches where ultraviolet radiation (UV-B) is relatively low, likely because of the lethal and sublethal effects of UV-B. In this natural experiment, we quantified disturbance to O. pumilio habitat, …

Does Teaching About Evolution In Adventist Schools Destroy Faith In God?, Russ Butler, Stan Dobias

Andrews University Teaching and Learning Conference

Students crave an environment where questions are welcomed and where all theories are thoroughly explored. There seems to be a hesitancy to review theories that may be opposed to one’s belief. The common approach is to focus only on what Scripture teaches and then to focus exclusively on the weaknesses of a theory like evolution. The challenge is that when students do discover arguments for evolution, they may conclude that their education was incomplete, some abandon their faith. The surprising results of a 3-year study found that a thorough study of evolution does not destroy faith in God.

Bistability And Switching Behavior In Moving Animal Groups, Daniel Strömbom, Stephanie Nickerson, Catherine Futterman, Alyssa Difazio, Cameron Costello, Kolbjørn Tunstrøm

Northeast Journal of Complex Systems (NEJCS)

Moving animal groups such as schools of fish and flocks of birds frequently switch between different group structures. Standard models of collective motion have been used successfully to explain how stable groups form via local interactions between individuals, but they are typically unable to produce groups that exhibit spontaneous switching. We are only aware of one model, constructed for barred flagtail fish that are known to rely on alignment and attraction to organize their collective motion, that has been shown to generate this type of behavior in 2D (or 3D). Interestingly, another species of fish, golden shiners, do exhibit switching …

Mammals Adjust Diel Activity Across Gradients Of Urbanization, Travis Gallo, Mason Fidino, Brian Gerber, Adam A. Ahlers, Julia L. Angstmann, Max Amaya, Amy L. Concilio, David Drake, Danielle Gray, Elizabeth W. Lehrer, Maureen H. Murray, Travis J. Ryan, Colleen Cassady St. Clair, Carmen M. Salsbury, Heather A. Sanders, Theodore Stankowich, Jacque Williamson, J. Amy Belaire, Kelly Simon, Seth B. Mangle

Scholarship and Professional Work - LAS

Time is a fundamental component of ecological processes. How animal behavior changes over time has been explored through well-known ecological theories like niche partitioning and predator–prey dynamics. Yet, changes in animal behavior within the shorter 24-hr light–dark cycle have largely gone unstudied. Understanding if an animal can adjust their temporal activity to mitigate or adapt to environmental change has become a recent topic of discussion and is important for effective wildlife management and conservation. While spatial habitat is a fundamental consideration in wildlife management and conservation, temporal habitat is often ignored. We formulated a temporal resource selection model to quantify …

Origin And Epigenetic Regulation Of Cutaneous T Cell Lymphoma, Carly M. Harro

USF Tampa Graduate Theses and Dissertations

The pathogenesis of Cutaneous T cell lymphoma (CTCL) remains unclear. Using conditional knockout mice, we found that ablation of the genomic organizer Special AT-rich sequence-binding protein-1 (Satb1) caused malignant transformation of mature, skin-homing, Notch-activated CD4+ and CD8+ T cells into progressively fatal lymphoma. Mechanistically, Satb1 restrained Stat5 phosphorylation and the expression of skin-homing chemokine receptors in mature T cells. H3K27 and H3K9 trimethylation occluded the SATB1 promoter in Sézary cells, while inhibition of SUV39H1/2 methyltransferases (unlike EZH2 inhibition), restored protective SATB1 expression and selectively abrogated the growth of primary Sézary cells more effectively than romidepsin. Additionally, using single-cell RNA/TCR sequencing …

Using Constructed Wetlands To Remove Pathogenic Parasites And Fecal Coliforms From Wastewater In Tanzania, Abdallah Zacharia, Wajihu Ahmada, Anne H. Outwater, Billy Ngasala, Rob Van Deun

Tanzania Journal of Science

Wastewater treatment is a widely used health protection measure that can be applied to control the transmission of wastewater-related infectious diseases to communities exposed to wastewater. This study determined the efficiency of three full-scale constructed wetlands (CWs) in removing pathogenic parasites and fecal coliforms (FC) bacteria from wastewater. Wastewater samples were collected from three CW systems located in the Dar es Salaam and Iringa regions of Tanzania. The modified Bailenger and modified Ziehl-Neelsen stain techniques were used to detect and quantity parasites. The membrane filtration method was used to detect and quantify FC. Data were analysed using IBM SPSS version …

Solar Cells: Types, Modules, And Applications–A Review, Amira Abd-Elfattah Darwish, Rana S. Abdelmohsen, Mohamed Ahmed, M. Megeed

Tanzania Journal of Science

The basic operating principle of photovoltaic (PV) devices is the conversion of solar irradiation into electricity. There are various applications of this principle in many countries such as Egypt, Nigeria and Denmark. Most of the solar PV projects are designed for street lighting, water pumping and water desalination. However, we hope about wide range of using the appropriate components and best technical procedures, standard PV projects with maximum performance output. The present systems now provide 20% to 40% only of the community's heat or lightness on annual basic needs. These include innovative and alternative ways to reduce material uses and …

Geochemistry Of Mafic-Intermediate Intrusive Rocks From The Twangiza-Namoya Gold Belt, Eastern Democratic Republic Of Congo: Trace Element Constraints On Their Origin, Petrogenesis And Tectonic Setting, Gerald L. Chuwa, Charles H. Kasanzu

Tanzania Journal of Science

Bulk geochemical data for the Twangiza-Namoya Gold Belt, Democratic Republic of Congo, are presented in order to classify the rock assemblages, elucidate their petrogenesis and tectonic settings. Nb/Yb and Zr/Ti constraints reveal two suites for the rocks: sub-alkaline to andesitic basalts (Suite-1); and alkaline basalts (Suite-2).  Ratios of Ti/Zr = 22–70; Zr/Hf = 35–42; Nb/Ta = 12–13; Nb/Th = 1–2 and La/Nb = 2.4–3.8 suggest arc-generated mantle melts with crustal inputs and arc-fluids metasomatism for Suite-1. The samples have positive LILE and negative Nb, Ta, Ti anomalies, enrichments in the LREE over middle and HREE (La/Yb)CN = 3.6–8.9 with negative …

Trends In The Development Of Industrial Sector Of Uzbekistan, Bakhtiyar Kalmuratov, Aydos Bekbosinov

Karakalpak Scientific Journal

The article presents the main directions of industrial transformation at the new stage of economic reforms in 2016-2020. The key achievements during this period in the development of manufacturing industry production and exports, the development of industrial and territorial structures, and the improvement of market mechanisms for the development of commodity markets are highlighted.

Socio-Economic Factors Of Environmental Problems, Manzura Kamalova, D. Shakenov

Karakalpak Scientific Journal

People consciously and intensively rebuild their nature according to their own needs, creating rural and urban areas in which they live. People care about the quality of life in the context of the unity of nature and culture. Social is a relatively new discipline that deals with urban space and environmental issues. One way to imagine what is beneficial to people is to find out what is economically best for the person. The article examines the economic factors that form the attitude towards social ecology in Kazakhstan. The article concludes that society should cooperate to achieve common things, both for …

Alzheimer's And Patient Caregiver Burnout: A Review Of The Literature, Madeline Hekeler

James Madison Undergraduate Research Journal (JMURJ)

The term “silent epidemic” is fitting for Alzheimer’s disease (AD), as its negative impact is widely felt but rarely discussed. Burnout among AD caregivers has become an epidemic of its own as caregivers experience an increase in health risks, stress, and financial burden. This literature review focuses on caregiver burnout and how imperative it is that caregivers are better supported in their role. Researchers have developed instruments to assess and intervene in caregiver burnout that have shown effectiveness among caregivers and their families.Nevertheless, further longitudinal research is warranted regarding more effective interventions, including stress management and social support mechanisms.

Aging-Associated Changes In Motor Function Are Ovarian Somatic Tissue-Dependent, But Berm Cell And Estradiol Independent In Post-Reproductive Female Mice Exposed To Young Ovarian Tissue, Tracy L. Habermehl, Kaden B. Underwood, Kevin D. Welch, Steven P. Gawrys, Kate C. Parkinson, Augusto Schneider, Michal M. Masternak, Jeffrey Mason

Center for Integrated Biosystems Publications

A critical mediator of evolution is natural selection, which operates by the divergent reproductive success of individuals and results in conformity of an organism with its environment. Reproductive function has evolved to support germline transmission. In mammalian ovaries, this requires healthy, active gonad function, and follicle development. However, healthy follicles do not contribute to germline transmission in a dead animal. Therefore, support of the health and survival of the organism, in addition to fertility, must be considered as an integral part of reproductive function. Reproductive and chronological aging both impose a burden on health and increase disease rates. Tremors are …

Ohio Anuran Gut Microbiomes, Serena Hoffman

Undergraduate Honors Thesis Projects

Recent studies focusing on the skin and gut microbiome of vertebrates have found how important microbiomes are to maintaining host health. Understanding the role the gut microbiome plays to host health is of great importance for conservation. Less is known about the gut microbiome than the skin microbiome for amphibians. Literature is especially lacking for local Ohio anuran species. The purpose of this study was to establish the baseline composition of the gut microbiome for local Ohio anurans and to determine whether host species or habitat is the best predictor of gut microbiome composition. Tadpoles were collected from seven different …

Diel Activity Patterns Of Two Distinct Populations Of Aedes Aegypti In Miami, Fl And Brownsville, Tx, John-Paul Mutebi, André Barretto Bruno Wilke, Erik Ostrum, Chalmers Vasquez, Gabriel Cardenas, Augusto Carvajal, Maday Moreno, William D. Petrie, Arturo Rodriguez, Henry Presas, Jesus Rodriguez, Fred Barnes, Christopher Vitek, Xochitl Estrada, Thalia Rios, Jeremy Marshall

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The diel biting activity of Aedes (Stegomyia) aegypti (L) populations was extensively investigated in the early 1900s to gain more information on the biology of Ae. aegypti, and this information was used to devise effective approaches to controlling populations of this species and protect the human population from widespread arbovirus outbreaks. However, few contemporary studies are available regarding the diel activity patterns of Ae. aegypti. To assess the diel activity patterns of Ae. aegypti in southern Florida and Texas, we conducted 96-h uninterrupted mosquito collections once each month from May through November 2019 in Miami, Florida, and Brownsville, Texas, using …

The Sglt2 Inhibitor Canagliflozin Reduces Androgen Receptor Expression And Nuclear Localization Of Beta-Catenin In Human Prostate Cancer Cells, Kalkidan Bekele, Tunde Smith, Lamonica Stewart

Student Research

Drugs that inhibit the protein sodium-glucose cotransporter-2 (SGLT2) are commonly used in the United States to treat type 2 diabetes. Recent studies suggest that SGLT2 inhibitors reduce growth of lung, liver, and breast cancer cells in vitro. Therefore, administration of SGLT2 inhibitors may also limit the growth of malignant tumors. Previous work from our laboratory has shown that one SGLT2 inhibitor, canagliflozin, reduces the proliferation of C4-2B cells, a castration-resistant human prostate cancer cell line. Concentrations of canagliflozin that reduce proliferation also lower levels of the androgen receptor (AR), a protein known to promote growth of prostate cancers. The goal …