Biology Commons^™

Student Perceptions Of Authoring A Publication Stemming From A Course-Based Undergraduate Research Experience (Cure), Ashley N. Turner, Anil K. Challa, Katelyn M. Cooper

Research, Publications & Creative Work

Course-based undergraduate research experiences (CUREs) engage students in authentic research experiences in a course format and can sometimes result in the publication of that research. However, little is known about student-author perceptions of CURE publications. In this study, we examined how students perceive they benefit from authoring a CURE publication and what they believe is required for authorship of a manuscript in a peer-reviewed journal. All 16 students who were enrolled in a molecular genetics CURE during their first year of college participated in semistructured interviews during their fourth year. At the time of the interviews, students had been authors …

Complete Mitochondrial Genome Sequence Of The Gulf Coast Tick (Amblyomma Maculatum), Amanda E. Brenner, Rahul Raghavan

Biology Faculty Publications and Presentations

The complete circularized mitochondrial genome sequence of Amblyomma maculatum is 14,803 bp long. It encodes 13 protein coding genes, 2 rRNA genes, 22 tRNA genes, 2 tick box motifs, and 2 control regions. The gene arrangement and content are consistent with those of previously reported Metastriata tick mitochondrial genomes.

Dynamic Control Of Upper Limb Stretch Reflex In Wrestlers, Sho Ito, Kento Nakagawa, Tsuyoshi Nakajima, Misaki Iteya, Larry Crawshaw, Kazuyuki Kanosue

Biology Faculty Publications and Presentations

Purpose: The objective of this study was to clarify the characteristics of the upper limb stretch reflex in wrestlers.

Methods: Ten wrestlers and 11 control subjects participated in the study. The experiment was divided into two sessions. In the extension perturbation session, participants either relaxed or flexed the elbow when they felt a perturbation (abrupt elbow extension induced by a dynamometer). This was done 30 times by each subject for both sessions. In the flexion perturbation session, participants also relaxed or extended the elbow when they felt a perturbation (abrupt elbow flexion). During the tasks, the stretch reflex …

The Saga Of Endocrine Fgfs, Phuc Phan, Bibhuti Ballav Saikia, Shivakumar Sonnaila, Shilpi Agrawal, Zeina Ismael Ibrahem Alraawi, Thallapuranam Krishnaswamy Suresh Kumar, Shilpa Iyer

Biological Sciences Faculty Publications and Presentations

Fibroblast growth factors (FGFs) are cell-signaling proteins with diverse functions in cell development, repair, and metabolism. The human FGF family consists of 22 structurally related members, which can be classified into three separate groups based on their action of mechanisms, namely: intracrine, paracrine/autocrine, and endocrine FGF subfamilies. FGF19, FGF21, and FGF23 belong to the hormone-like/endocrine FGF subfamily. These endocrine FGFs are mainly associated with the regulation of cell metabolic activities such as homeostasis of lipids, glucose, energy, bile acids, and minerals (phosphate/active vitamin D). Endocrine FGFs function through a unique protein family called klotho. Two members of this family, α-klotho, …

A Wild Yeast Laboratory Activity: From Isolation To Brewing, Amanda N. Scholes, Erik D. Pollock, Jeffrey A. Lewis

Biological Sciences Faculty Publications and Presentations

Microbial fermentation is a common form of metabolism that has been exploited by humans to great benefit. Industrial fermentation currently produces a myriad of products ranging from biofuels to pharmaceuticals. About one-third of the world’s food is fermented, and the brewing of fermented beverages in particular has an ancient and storied history. Because fermentation is so intertwined with our daily lives, the topic is easily relatable to students interested in real-world applications for microbiology. Here, we describe the curriculum for a guided inquiry-based laboratory course that combines yeast molecular ecology and brewing. The rationale for the course is to compare …

Reckless Parenting With A Purpose, Walter H. Piper, Linda Grenzer

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

No abstract provided.

Three Lc-Ms Plant Metabolomics Studies Of Hop (Humulus) Species: Wild H. Neomexicanus, Drought Stress, And Agricultural Terroir, Taylan Morcol

Dissertations, Theses, and Capstone Projects

The hop plant (Humulus L., Cannabaceae) is a dioecious, perennial, twining vine with a long history of human use. Nowadays, hop plants are generally grown for their inflorescences (“cones”), which are used in brewing for their phytochemical metabolites. Many of these metabolites are involved in plant stress response and communication. Genetics and environment are two major factors that affect plant metabolism. In three separate metabolomics studies, this project examined the effects of both genetic and environmental factors on hop phytochemistry.

In the first study, 23 hop genotypes were grown in two different locations in the Pacific Northwest region of …

Estrogen Modulation Of Vta Dopamine Neuron Physiology And Behavioral Responsivity To Variable Social Stressors, Mary R. Shanley

Dissertations, Theses, and Capstone Projects

The behavioral output of different animals, or even the same animal in different contexts, is remarkably variable in response to the same external stimulus. This behavioral diversity is due to the complex integration of external and internal stimuli, through both neuronal and hormonal signals that selects the best behavioral response. By their nature as long-distance signaling molecules, hormones play a critical role in communicating information about internal states across the organism. Many hormones produced in the periphery target the central nervous system to modulate animal behavior, selecting for behaviors that are appropriate over behaviors that are maladaptive in that specific …

Understanding The Influence Of Zinc On Grain Cadmium Accumulation And Bioaccessibility In Rice, Michael A. Tavarez

Dissertations, Theses, and Capstone Projects

The effect of cadmium and zinc on mineral concentrations in three cultivars of rice

Interactions between the essential mineral zinc (Zn) and the toxic heavy metal cadmium (Cd) play an important role in regulating transport of both minerals to rice grains. Understanding these interactions is crucial for limiting cadmium and increasing zinc transfer to the food chain. Previous studies on the matter have had conflicting results suggesting synergistic and antagonistic relationships between the minerals. The goal of this work was to identify the effect of external cadmium and zinc on the uptake and translocation of both minerals from roots to …

Analysis Of Transplantable Photoreceptor Replacement Cell Chemotactic Mechanisms In Retinal Biomimetic Ligand Gradients, Onyekwere Onwumere

Dissertations, Theses, and Capstone Projects

Disease or trauma induced loss of rod and cone photoreceptors is a major cause of vision loss worldwide. To replace lost photoreceptors and restore vision, laboratories around the world are investigating photoreceptor replacement strategies using subretinal injection of photoreceptor precursor cells (PPCs) and retinal progenitor cells (RPCs). A major obstacle in the field is that transplanted photoreceptor replacement cells exhibit extremely limited migration into host retina following injection into the subretinal space. In this work, we show that PPCs and host retinal interaction bioinformatics modeling can identify key pathways involved in photoreceptor replacement cell migration and invasion behaviors. In addition, …

Evaluation Of Wind Data Reliability By Using Logarithmic And Power Laws: A Case Study In Southern Iraq, Ahmed B. Khamees, Saif F. Yaseen, Khalid S. Heni, Mudar Ahmed Abdulsattar

Karbala International Journal of Modern Science

In this study, two sites were investigated in the southern region of Iraq: Ali AL-Gharbi and AL-Salman in Mesan and AL-Muthana provinces, respectively. A theoretical extrapolation between wind speed and height was carried out for both locations each month using the Logarithmic Law. Power Law was also applied to achieve calculations of wind shear coefficient (α) by using the actual data collected from the meteorological mast installed in each site at three levels of 10 m, 30 m, and 50 m, at an interval of ten minutes. To compare the effects of each law, two laws are employed.

Polystyrene Molecular Weight Determination Of Submicron Particles Shell, Airat Z. Sakhabutdinov, Safaa.M.R.H. Hussein, Alsu R. Ibragimova Ph.D., Vladimir Kuklin Ph.D., Maxim Petrovich Danilaev, L.Y. Zaharova

Karbala International Journal of Modern Science

The method of determination of the molecular weight of the polystyrene, which is formed as the shell on the surfaces of submicron aluminum oxide particles is considered in the paper. This method is based on the sedimentation of submicron particles, covered by polymer molecules, in a solvent for polystyrene. It is shown that the average polystyrene molecular weight is 39500±11250 amu, when the polymer shells on the surfaces of submicron particles (Al2O3) are formed by the vapor-phase method.

Adaptive Reconstruction Of The Heterogeneous Scan Line Etm+ Correction Technique, Heba Kh. Abbas, Salema S. Salman, Rash Awad Abtan, Anwar H. Al-Saleh, Ali A. Al-Zuky

Karbala International Journal of Modern Science

ETM+ is a land-imaging sensor with great and wide use in many fields, however, after May 2003, because of a technical defect in the sensor´s system scan line corrector SLC, it started giving images of earth containing black gap lines at a 22% rate. These gaps made the process of analyzing and extracting accurate information from these images difficult and complicated. Therefore, scientists have developed many techniques to remove the gap lines from all ETM+ band-images and complete the missing data. In this study, three different ETM+ time images with a 16-day interval between them were used to fill gap …

Two-Dimensional Quantitative Profiling Of Cell Morphology With Serous Effusion By Unsupervised Machine Learning Analysis, Safaa Al-Qaysi Ph.D., Ding Dai Md Ph.D., Heng Hong Md Ph.D., Yuhua Wen Ph.D., X.H. Hu Ph.D.

Karbala International Journal of Modern Science

Cytological evaluation of serous effusion specimens is an important part of cancer diagnosis. In this study we performed two-dimensional (2D) morphometric features and clustering analysis for development of useful techniques for identification and differentiation of malignant and begin cells in serous effusion specimens extracted from ten patients with clinical symptoms of pleural and peritoneal effusion. Our findings show that the two-dimensional (2D) morphometric features and clustering analysis are useful techniques for identification and differentiation of malignant and begin cells in serous effusion specimens, which can lead to development of new methods for rapid cells profiling in clinical application.

Editorial Board

Karbala International Journal of Modern Science

No abstract provided.

Bacteriophages Infecting Enterobacter Cloacae To Reduce Bloater Damage In Fermented Cucumbers

Symposium of Student Scholars

Fermented cucumbers are one of the most important fermented vegetables consumed worldwide. During cucumber fermentations, certain undesirable changes may occur. One of such changes is known as bloater defect (hollow cavities in fermented cucumbers), which is primarily caused by gas-producing bacteria including Enterobacter cloacae. Bloater defect lowers product quality and leads to significant economic loss to the pickle industry, and effective preventative methods are needed. Bacteriophages (phages) are highly host-specific bacterial killers. Use of phages to control unwanted bacteria in foods is a promising approach because phages do not change food properties. This research was to isolate, characterize, and …

Food Deserts: Hungry For Answers, Lawren Cumberbatch

Symposium of Student Scholars

In 2010, the United States Department of Agriculture (USDA) reported that 23.5 million people in the United States live in food deserts. As defined by the USDA, a “food desert” is a neighborhood that lacks healthy food sources. This can be measured by distance to a store, number of stores in an area, individual-level resources such as family income or vehicle availability, and neighborhood-level resources such as availability of public transportation. Past research provides evidence that food deserts are especially likely to occur in communities heavily populated by minorities. As a Black Indian pre-med student aiming to join the world …

Determining Malignancy: Can Mammogram Results Help Predict The Diagnosis Of Breast Tumors?, Taylor Behrens

Symposium of Student Scholars

Even with advancements in treatment and preventative care, breast cancer remains an epidemic claiming more than 40,000 American male and female lives each year. The mammogram dataset that I am analyzing was initially complied in the early 1990s by a team from the University of Wisconsin - Madison. Past research diagnoses breast cancer from fine-needle aspirates. My research focuses on predicting whether we can determine breast cancer diagnoses without the use of invasive procedures and, in particular, whether we can predict breast cancer based on mammogram data. Do measures of gray-scale texture, radius, concavity, perimeter, compactness, area, and smoothness of …

Initial Assessment Of Potential Relationships Between Plant Communities And The Soil Microbiome In Closed Forest And Longleaf Pine Restoration Sites., Sean Davis, Ian Kennedy

Symposium of Student Scholars

Longleaf pine is an endangered ecosystem characterized by high levels of biodiversity.

Our study took place in the Sheffield Wildlife Management Area located in the Piedmont ecoregion of Georgia in Paulding County. Fifty plots of 10 x 30 m² were setup on south or north facing slopes, some in covered forest, and some in an area actively being restored for the longleaf pine. All trees above 1.37 m were identified and had their diameter measured, and species diversity, relative density, dominance, and frequency were determined. Herbaceous plant cover percentages were recorded in select plots. Soil samples were also collected …

Laryngeal Vocals In Old World Locals: Air Sacs Usage In Bonobos, Chelsea Trenbeath

Symposium of Student Scholars

Except for humans, extant great apes have evolutionarily conserved lateral ventricular air sacs extending from laryngeal saccules. Humans are the only species of Hominidae that lack this anatomical feature attached to the primary vocal apparatus. As we are the only species that produces spoken language, this association has led to hypothesis that the loss of lateral ventricular air sacs was necessary for the evolution of spoken language. However, why these sacs are conserved in all other hominids remains unclear. Computer modeling has indicated that air sacs may increase resonance properties, but there are no data from great apes indicating which …

The Interplay Of The Physical Landscape And Social Dynamics In Shaping Movement Of African Savanna Elephants (Loxodonta Africana), Maggie Wisniewska

Dissertations

Free ranging African savanna elephants (Loxodonta africana) are increasingly impacted by human-induced habitat loss and poaching for ivory. Because elephants live in tightly knit groups, this combination of threats not only reduces the size of their populations but also degrades their social interactions. Long-term relationships with socially competent individuals, such as experienced seniors, benefit the ability of other group members to access limiting resources and avoid danger. Understanding how anthropogenic pressure may affect persistence of elephant populations is important, because elephants are an economically important keystone species. This doctoral thesis characterizes how individual elephants influence the movement of their social …

Temporal Evolution Of Structure And Function In The Periphery And Central Auditory Systems With Mild Blast Induced Tinnitus In Rat Animal Models, Ningning Shao

Dissertations

Exposure to blast causes debilitating trauma including tinnitus among soldiers and civilians (Cave et al., 2007; Remenschneider et al., 2014; Singh et al., 2016). Tinnitus is a constant ringing noise perception without external acoustic event; it affects sleep, concentration, behavior, leading to suicidal tendencies (Swan et al., 2017). Though blast induced tinnitus has been studied, structural and functional dysfunctions along auditory systems have not been systematically studied. It was hypothesized in this work that blast causes tinnitus even while the ears are mechanically protected, and the damage occurred in both central and peripheral auditory systems, which contributed to increased anxiety …

Evaluation Of Antibacterial Activities Of Tanzanian Moringa Oleifera Extracts Against Escherichia Coli And Klebsiella Pneumonia Clinical Isolates, Sartaz Begum, Jenipher S. Asenga, Valence M.K. Ndesendo, Baraka L. Ngingo

Tanzania Journal of Science

In vitro antibacterial activities of methanolic leaf and seed extracts of Moringa oleifera grown in Dodoma, Tanzania were evaluated using standard microdilution and disc diffusion methods against extended spectrum beta lactamase producing Gram negative bacteria (Escherichia coli and Klebsiella pneumoniae). Microdilution method showed no activity at concentration of 20 mg/mL for all the extracts except leaf extract which exhibited minimum inhibition at concentration of  2.5 µg/mL for E. Coli but when high concentrations of the extracts were used in the disc diffusion method then the results exhibited the highest killing susceptibility at concentration of 0.4 g/mL with zone of inhibition …

Antimicrobial Activities Of Endophytic Fungal Crude Extracts Isolated From Cashew Tree (Anacardium Occidentale), Nana Amiri, Donatha D Tibuhwa

Tanzania Journal of Science

This study presents the antimicrobial activities of endophytic fungal crude extracts isolated from leaves, stems and roots of cashew trees (Anacardium occidentale) which showed disease symptoms and those resistant from Fusarium wilt in Mtwara region. Sections of the cashew trees were made and cultured to isolate endophytes. Eight endophytes were isolated and characterized by using morphological and molecular markers. Neopestalotiopsis, Penicillium, Lasidioplodia and Daldinia sp isolated from resistant tree and Auxarthron and Aspergillus sp from diseased tree. Antimicrobial activities of the isolated endophytic fungal crude extracts were done against pathogenic Fusarium oxysporum and three human pathogens namely, Staphylococcus aureus, Escherichia …

Effects Of Hydroxyurea Treatment On Haemolysis In Patients With Sickle Cell Disease At Muhimbili National Hospital, Tanzania, Azra Gangji, Upendo Masamu, Josephine Mgaya, Joyce Ndunguru, Agnes Jonathan, Irene Kida Minja, Julie Makani, Emmanuel Balandya, Paschal Ruggjao, Siana Nkya

Tanzania Journal of Science

Tanzania is one of the countries with a high burden of sickle cell disease (SCD). Haemolytic anaemia is a clinical feature of SCD, and has been linked to major complications leading to morbidity and mortality. Treatment with hydroxyurea (HU) has shown to induce foetal haemoglobin (HbF) which in turn decreases haemolysis in patients. This study aimed to investigate the effects of HU on haemolysis in SCD patients attending Muhimbili National Hospital, Tanzania by comparing their haemolytic parameters before and after therapy. Patients meeting the criteria were initiated on HU therapy for 3 months. Two haemolytic biomarkers: unconjugated plasma bilirubin levels …

Serological Analyses Of Human Brucellosis In Ngara And Kibondo Districts, Tanzania, Jestina V Katandukila, Yeremia J Chuhila, Fred D Chibwana

Tanzania Journal of Science

Brucellosis, a zoonotic disease transmitted by Brucella species, is transmitted to humans from infected animals through handling dairy products like milk, blood, and semen. Although some human communities in Tanzania live close to livestock, the status of human brucellosis in Ngara and Kibondo Districts in Kagera and Kigoma regions, respectively, is poorly understood. As such, the present study aimed to investigate the status of human brucellosis in north-western Tanzania, particularly Ngara and Kibondo Districts, where the risk of contracting zoonotic diseases, including brucellosis, is high due to the abundance of livestock. Among the screened sera (n = 450), the prevalence …

Synthesis And Antimicrobial Activities Of 1-((5-Chloro-1-Ethyl-2-Methyl-1h-Imidazol-4-Yl)Sulfonyl)-N-Ethylpyrrolidine-2-Carboxamide, Oluwaseyi B Ovonramwen, Bodunde J Owolabi, Abiodun Falodun

Tanzania Journal of Science

A new 1-((5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl)-N-ethylpyrrolidine-2-carboxamide was synthesized from methyl-1-[(5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl]pyrrolidine-2-carboxylate and ethylamine. The compound methyl-1-[(5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl]pyrrolidine-2-carboxylate was synthesized from methyl pyrrolidine-2-carboxylate and 5-chloro-4-chlorosulfonyl-1-ethyl-2-methyl-imidazole. The compounds were characterized based on FTIR, 1H, 13C NMR, and DEPT 135 analysis. Antimicrobial activities of the 1-((5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl)-N-ethylpyrrolidine-2-carboxamide against Gram-positive (methicillin-susceptible Staphylococcus aureus, methicillin-resistant Staphylococcus aureus, and Bacillus subtilis), Gram-negative (Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae), and Candida albicans were carried out using the standard microbiological method. The newly synthesized 1-((5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl)-N-ethylpyrrolidine-2-carboxamide had no activities against the tested organisms. Keywords:    1-((5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl)-N-ethylpyrrolidine-2-carboxamide; methyl-1-[(5-chloro-1-ethyl-2-methyl-1H-imidazol-4-yl)sulfonyl]pyrrolidine-2-carboxylate; L-proline; ethylamine.

Insecticidal Activities Of Aqueous Extracts Of Five Nigerian Aromatic Spices Against Garden Eggplant Defoliators And Fruit Borer Leucinodes Orbonalis Guenee: Lepidoptera: Crambidae, Juliana A. Ugwu, Kehinde T. Kareem, Julius O. Aluko

Tanzania Journal of Science

The study evaluated the prospects of aqueous extracts of five Nigerian spices against garden eggplant defoliators and fruit borer (Leucinodes orbonalis) in the field. The treatments consisted of Piper guineense (black pepper), Aframomum melegueta (aligator pepper), Eugenia aromatica (cloves), Zingiber officinale (ginger), Capsicum annum (chilli pepper) and untreated check (control). All the aqueous extracts evaluated reduced leaf damaged by defoliators on garden eggplant compared to control. P. guineense, with mean value of 11.02 number of perforations, was the most effective against defoliators, followed by E. aromatica (12.97) reducing leaf damage by 39.64 and 28.74%, respectively. However, their efficacies against defoliating …

Generalizations Of Integral Inequalities Similar To Hardy’S Inequality, Gabriel Nshizirungu, Marco Mpimbo, Vedaste Mutarutinya

Tanzania Journal of Science

In this paper, we established the generalizations of integral inequalities similar to Hardy’s inequality. Keywords:    Hardy’s inequality, Integral inequalities, similar version, Hlder’s inequality, Generalizations.

On The Convergence Of Orbits In Sequence Space L^2, Marco Mpimbo

Tanzania Journal of Science

Abstract This paper discusses the convergence of orbits for diagonal operators defined on . In particular, the basis elements of  are obtained using the linear combinations of the elements of the orbit. Furthermore, via the classical result of the determinant of the Vandermonde matrix, it is shown that, the more the elements of the orbit are used, the faster the convergence of the orbit to the basis elements of . Keywords: Diagonal operators, Convergence of Orbits of operators, Vandermonde matrix, Norm topology.