Biology Commons^™

Effectiveness Of Endothall Treatment In Reducing Potamogeton Crispus In Lake Julia, Jake Sorensen

Journal of Earth and Life Science

Curly leaf pondweed Potamogeton crispus, is a submerged aquatic plant non-native to North America. It was most likely introduced when common carp Cyprinus carpio were intentionally brought to the Midwest. Endothall is an aquatic herbicide commonly used to control curlyleaf pondweed in lakes. This study focused on collecting data from Lake Julia in Sherburne County, MN. Lake Julia is treated annually in the spring to control curlyleaf pondweed. The results show treatment areas saw a significant increase in vegetation density compared to control areas (P < 0.01). Changes in percent vegetation coverage by date were insignificant (P = 0.24). No significant signs of fish kills were observed. Because this study looked at overall vegetation coverage instead of specifically curlyleaf pondweed, we cannot conclude the increase in vegetation coverage was from curlyleaf pondweed alone. Based on the results from Poovey et al. (2002) we would expect lower vegetation coverage in treatment areas instead of the increased vegetation coverage observed in our study. This suggests the possibility that the endothall treatment successfully killed curlyleaf pondweed in treated areas, which allowed for new growth of submerged aquatic plants to take place as water temperatures increased.

Virus-Like Particles Enable Low Levels Of Crispr-Cas9-Mediated Homology-Directed Repair, Noah C. Cheng , '21

Senior Theses, Projects, and Awards

The development of efficient and safe delivery platforms for CRISPR-Cas9 genome editing tools is one of the largest challenges for in vivo therapeutic genome editing. Virus-like particles (VLPs), which harness viral packaging and delivery mechanisms, have been shown to efficiently deliver CRISPR-Cas9 ribonucleoprotein complexes (RNPs) to cells. Here, we sought to elucidate whether VLPs can deliver the necessary components for CRISPR-Cas9-mediated homology-directed repair (HDR). We tested four different methods to induce HDR in a reporter cell line using VLPs: [1] nucleofection of HDR repair templates into cells and subsequent treatment with VLPs carrying Cas9 RNPs (Cas9 VLPs), [2] treatment with …

Position-Scanning Peptide Libraries As Particle Immunogens For Improving Cd8+ T-Cell Responses, Michael C. Vega

Faculty Articles, Papers, and Other Scholarship

Short peptides reflecting major histocompatibility complex (MHC) class I (MHC-I) epitopes frequently lack sufficient immunogenicity to induce robust antigen (Ag)-specific CD8⁺ T cell responses. In the current work, it is demonstrated that position-scanning peptide libraries themselves can serve as improved immunogens, inducing Ag-specific CD8⁺ T cells with greater frequency and function than the wild-type epitope. The approach involves displaying the entire position-scanning library onto immunogenic nanoliposomes. Each library contains the MHC-I epitope with a single randomized position. When a recently identified MHC-I epitope in the glycoprotein gp70 envelope protein of murine leukemia virus (MuLV) is assessed, only one …

Full Issue: Volume 14, Number 2, Spring 2021

The Science Journal of the Lander College of Arts and Sciences

Complete .pdf file of Volume 14, Number 2 of The Science Journal of the Lander College of Arts and Sciences. Published Spring 2021.

The Relationship Between Autoimmunity And Polyautoimmunity, David Schon

The Science Journal of the Lander College of Arts and Sciences

Autoimmune disease refers to a systemic immune response by the body against its own healthy tissue and cells. This results in various non-specific and systemic inflammatory processes that evolve into more than 100 individual diseases. Numerous biological similarities exist between the different pathophysiological pathways, including biochemical cascades and inflammasome mediators. This paper aims to investigate whether contracting one form of autoimmune disease can lead to the development of polyautoimmunity and multiple autoimmune syndrome. Scientists have identified chronic levels of high stress as a contributor to higher levels of C-reactive protein and several immune modulating interleukins, which can lead to both …

What Are The Possible Causes And Effective Therapeutic Approaches Of Preeclampsia?, Adina Hadi

The Science Journal of the Lander College of Arts and Sciences

Preeclampsia is a complication of pregnancy primarily characterized by hypertension and proteinuria and affects other organs as well. The underlying causes are not yet fully understood. However, it is suggested that angiogenic factors of the placenta, genetic factors, a malfunctioning immune system, and oxidative stress all play a role in causing preeclampsia. Currently, the only definitive cure known for preeclampsia is delivery of the baby. Management of the condition includes taking preventative measures as well as drugs such as labetalol and MgSO4. This paper analyzes mechanisms of preeclampsia and determines the possible causes and most effective ways to manage the …

Effects Of Soy Isoflavone, Anne Roberts

The Science Journal of the Lander College of Arts and Sciences

Soy, which contains a form of phytoestrogen known as isoflavones, impacts the biological activity of humans at all stages. There are many aspects to consider when determining whether soy is beneficial. Since the hormone estrogen plays a significant role in maintaining the biochemical and homeostatic conditions of an individual, it follows that the disruption of estrogenic levels can be detrimental. There are many hormone- dependent diseases that can be linked to one’s diet, and the possibility of utilizing phytoestrogens, such as soy, to prevent or control hormonal irregularities is compelling. This paper explores the effects that phytoestrogens, specifically soy, can …

Migraine Triggers, Adina Jeidel

The Science Journal of the Lander College of Arts and Sciences

Migraines are a painful and life-interrupting disease which strikes around 23 million Americans every year (Goadsby et al., 2017). Not enough studies have been done to help the public fully understand migraines. Details regarding the causes and pathophysiology of migraines continue to be analyzed by physicians and scientists, as no theory has been fully confirmed regarding a migraine’s concrete path. The goal of this scientific review is to provide an overview for the main triggers of migraines, in reference to recent clinical investigations, and to understand why they might cause patients to be more prone to having a migraine attack …

Rapamycin And Metformin In Treating Covid-19, Avrohom Karp

The Science Journal of the Lander College of Arts and Sciences

The SARS-CoV-2 virus has spread rapidly, resulting in a global pandemic. There is a great need for an effective drug cocktail therapy to combat Acute Respiratory Distress Syndrome (ARDS), a major cause of death due to COVID-19. The two drugs examined are metformin, an antidiabetic medication, and rapamycin. Rapamycin is often prescribed for transplant patients as it has an immunosuppressive effect. The aim of the investigation was to determine the efficacy of metformin and rapamycin in treating COVID-19, and to examine what an effective protocol would look like. These two drugs both inhibit mTOR and can reduce the body’s auto-immune …

Developing Approaches Towards The Treatment Of Covid-19, Chana Weis

The Science Journal of the Lander College of Arts and Sciences

In late 2019 a newly identified strain of coronavirus, SARS-CoV-2 emerged, causing a worldwide pandemic of respiratory illness, Covid-19. Covid-19 has drastically transformed the world in numerous ways. The virus is highly contagious and, in some cases, fatal. A successful cure has not yet been discovered and therefore society is urged to take proper precautions to prevent the spread of the potentially fatal virus. This paper analyzes the proper precautions that should be taken as well as the ongoing research that has been done to stop the spread of the virus.

Full Issue: Volume 15, Number 1, Fall 2021

The Science Journal of the Lander College of Arts and Sciences

Complete .pdf file of Volume 15, Number 1 of The Science Journal of the Lander College of Arts and Sciences. Published Fall 2021.

Detailed Evaluation Of Cancer Sequencing Pipelines In Different Microenvironments And Heterogeneity Levels, Batuhan Kisakol, Şahi̇n Sarihan, Mehmet Ari̇f Ergün, Mehmet Baysan

Turkish Journal of Biology

The importance of next generation sequencing (NGS) rises in cancer research as accessing this key technology becomes easier for researchers. The sequence data created by NGS technologies must be processed by various bioinformatics algorithms within a pipeline in order to convert raw data to meaningful information. Mapping and variant calling are the two main steps of these analysis pipelines, and many algorithms are available for these steps. Therefore, detailed benchmarking of these algorithms in different scenarios is crucial for the efficient utilization of sequencing technologies. In this study, we compared the performance of twelve pipelines (three mapping and four variant …

Increased Ribonuclease Activity In Solanum Tuberosum L. Transformed With Heterologous Genes Of Apoplastic Ribonucleases As A Putative Approach For Production Of Virus Resistant Plants, Andrii Potrokhov, Daria Sosnovska, Olga Ovcharenko, Irena Budzanivska, Volodymyr Rudas, Mykola Kuchuk

Turkish Journal of Biology

Viral pathogens seriously decrease the yield of potato (Solanum tuberosum L.) -an important agricultural crop. Therefore, there is a demand for potato cultivars resistant to multiple viruses. Ribonucleases (RNases) are supposed to be engaged to antiviral response in plants. Heterologous RNase gene expression provides a tool for production of cultivars with multiple resistance to viruses and viroids. Transgenic potato cultivars Luhivs'ka and Lasynak with heterologous genes bov and ZRNase II of apoplastic RNases from Bos taurus and Zinnia elegans respectively were obtained via Agrobacterium-mediated transformation. The presence of bov and ZRNase II transgenes was confirmed by PCR analysis. RNase activity …

Pathogenesis And Treatment Of Cytokine Storm In Covid-19, Mehmet Soy, Gökhan Keser, Mehmet Pami̇r Atagündüz

Turkish Journal of Biology

COVID-19 is a viral infection caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that killed a large number of patients around the world. A hyperinflammatory state resulting in a cytokine storm and adult respiratory distress syndrome seems to be the major cause of the death. Many mechanisms have been suggested in the pathogenesis of COVID-19 associated cytokine storm (COVID-CS). Insufficient viral clearance and persistence of a strong cytokine response despite inadequate antiviral immunity seem to be the main mechanisms underlying the pathogenesis. The diagnosis of COVID-19 is based on relatively constant clinical symptoms, clinical findings, laboratory tests, and …

An Update Comprehensive Review On The Status Of Covid-19: Vaccines, Drugs, Variants And Neurological Symptoms, Ebru Özkan Oktay, Sali̇h Tuncay, Tuğba Kaman, Ömer Faruk Karasakal, Öznur Özge Özcan, Tuğçe Soylamiş, Mesut Karahan, Muhsi̇n Konuk

Turkish Journal of Biology

Various recently reported mutant variants, candidate and urgently approved current vaccines against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), many current situations with severe neurological damage and symptoms as well as respiratory tract disorders have begun to be reported. In particular, drug, vaccine, and neutralizing monoclonal antibodies (mAbs) have been developed and are currently being evaluated in clinical trials. Here, we review lessons learned from the use of novel mutant variants of the COVID-19 virus, immunization, new drug solutions, and antibody therapies for infections. Next, we focus on the B 1.1.7, B 1.351, P.1, and B.1.617 lineages or variants of …

A Genetic Investigation Of Anticoagulant Rodenticide Resistance In Mus Musculus Of Western Australia: Implications For Conservation And Biosecurity, Bridget Judith Maria Lucrezia Duncan

Theses : Honours

Human-wildlife interactions have developed since the agricultural revolution that occurred 10,000 years ago, and the expansion of commensal species’ geographical distribution led to conflicts that prompted humans to adopt a wide range of control methods for pest species (Horvitz, Wang, Wan, & Nathan, 2017; Riyahi et al., 2013; Saraswat, Sinha, & Radhakrishna, 2015). The order Rodentia is characterised by a high number of successful invaders, which humans have attempted to manage with the use of anticoagulant rodenticides (ARs) since the 1940s (Capizzi, Bertolino, & Mortelliti, 2014; Ruiz-Suárez et al., 2014). The rise and spread of a genetic mutation that infers …

Initial And Advanced Stages Of Microbiota Establishment Within The Tsetse Fly, Miguel Eduardo Medina Munoz

Graduate Theses, Dissertations, and Problem Reports (ETD)

Symbiosis is a long-term physical association between two or more species, although little is known regarding its evolutionary origins, particularly at the genetic level. Tsetse flies are the vector of African trypanosomes, causative agents of Human and Animal African Trypanosomiases. Tsetse provide an ideal model for studying initial and advanced stages of symbiosis. Tsetse have a simple digestive tract microbiota primarily consisting of two bacteria; the ancient mutualist Wigglesworthia glossinidia and the recently acquired Sodalis glossinidius. This work presents a chronological study in evolutionary terms of the history of a microbial-insect association. First, I present concepts on symbiosis and …

Tree Species Influence On Microbial Functional Gene Abundance And N Cycling In Riparian Soil, Elizabeth Matejczyk

Graduate Theses, Dissertations, and Problem Reports (ETD)

Little is known about how above-ground vegetation may differentially influence the below-ground microbial community structure, abundance, and function. Abundance of soil microbial N cycling genes responsible for nitrification (amoA), denitrification (nirK and nirS), and nitrous oxide reduction (nosZ) may vary with tree species and increasing N availability, and these variables may be used to predict production of NO₃^- and N₂O from soil. Variability of nitrification and denitrification rates have also been linked to tree mycorrhizal associations, with soil beneath tree species associated with arbuscular mycorrhizal (AM) exhibiting greater denitrification rates …

Using Zebrafish To Elucidate The Expression And Gene Regulatory Network Of The Genomic Screen Homeobox Transcription Factors And Bring Innovative Science Learning Experiences To West Virginia, Rebecca Ann Coltogirone

Graduate Theses, Dissertations, and Problem Reports (ETD)

Central nervous system (CNS) development requires a code of regionally expressed transcription factors that impart initial neuronal cell identity, connectivity, and function. The absence of a transcription factor code would eliminate the neurodevelopmental logic producing diverse cell types in the CNS. Furthermore, early disruptions in transcription factor expression can affect later connectivity and function of neuronal circuits mediating sensory processing, defects in which are often observed as comorbid with various neurodevelopmental disorders (NDDs). Characterizing transcription factor expression and function is therefore an essential step in discerning the molecular mechanisms underlying human NDDs. genomic screen homeobox 1 and 2 (gsx1 …

Proximal And Distal Effects Of Genetic Susceptibility To Multiple Sclerosis On The T Cell Epigenome, Tina Roostaei, Hans-Ulrich Klein, Yiyi Ma, Daniel Felsky, Pia Kivisäkk, Sarah M. Connor, Alexandra Kroshilina, Christina Yung, Belinda J. Kaskow, Xiaorong Shao, Brooke Rhead, José M. Ordovás, Devin M. Absher, Donna K. Arnett, Jia Liu, Nikolaos Patsopoulos, Lisa F. Barcellos, Howard L. Weiner, Philip L. De Jager

Advanced Science Research Center

Identifying the effects of genetic variation on the epigenome in disease-relevant cell types can help advance our understanding of the first molecular contributions of genetic susceptibility to disease onset. Here, we establish a genome-wide map of DNA methylation quantitative trait loci in CD4⁺ T-cells isolated from multiple sclerosis patients. Utilizing this map in a colocalization analysis, we identify 19 loci where the same haplotype drives both multiple sclerosis susceptibility and local DNA methylation. We also identify two distant methylation effects of multiple sclerosis susceptibility loci: a chromosome 16 locus affects PRDM8 methylation (a chromosome 4 region not previously associated …

Change In The Behaviors And Spatial Use Of Canada Lynx (Lynx Canadensis) Over Time At John Ball Zoo, Hailee Cederquist

Student Summer Scholars Manuscripts

Felines are popular attractions at zoos across the country, even more so when young animals are involved. As such caretakers strive to ensure that their animal’s needs are met, and individuals display healthy behaviors and activity levels in comparison to their wild counterparts (Mcphee & Carlstead, 2010). However, cats, being wide-ranging carnivores, are known to be prone to stereotypical behaviors which can be detrimental to an animal’s health (Clubb & Mason, 2003). At John Ball Zoo in Grand Rapids, Michigan, we observed the behaviors and spatial use of 3 Canada lynx (Lynx canadensis) during the summer of 2020; an adult …

Role Of Vascular Endothelial Growth Factor Receptor 2 Pathway Due To Preeclampsia: A Review, Firdous Ali

Williams Honors College, Honors Research Projects

Preeclampsia is a pregnancy complication that is characterized mainly by hypertension in the mother. The exact pathogenesis of preeclampsia is unknown, although the disease is attributed to a number of factors such as angiogenic factor levels and endothelial dysfunction. Presently, the control program for the disease involves the delivery of the fetus and the placenta. There is a need to develop novel therapies that would control preeclampsia from the moment it is diagnosed to minimize the effects on the mother and child. VEGF is a protein involved in the pathogenesis of the condition. The defect in one of its receptors, …

The Evolution Of Technology, Kelly Cooper

Williams Honors College, Honors Research Projects

As per outlined by Dr. Quinn, this literature review will be a comprehensive review paper including an overview of current and previous research done in the field of Memetics. This will further include sifting through literature to hone in on a specific, new area of memetics Dr. Weeks is focused on, the evolutionary change of abiotic factors through purchasing. This is to be completed with the help of the library worshops designed to teach the skills necessary to undergo a literature review of this size. I will also participate in weekly reading groups to discuss papers and work closely with …

How Do Prey Capture And Simulated Fire Affect Growth And Nutrient Limitation In A Carnivorous Pitcher Plant, Sarracenia Alata?, Jalen Christopher Holloway

Electronic Theses and Dissertations

Carnivorous plants are defined as being able to benefit from the nutrients of prey in the environment, and have at least one trait that either retrieves, ingests, or lures a prey to its traps. The association of carnivorous plants with fire-prone habitats was initially described as a paradox, considering that carnivorous plants are often associated with nutrient-poor soils and fires can increase soil nutrient availability. This apparent paradox assumes, however, that the nutrients that increase in availability following fire are those also provided by prey, which might not be true. In habitats with nitrogen-poor soils, fire has been shown to …

Traction Force Is Modulated By The Calpain Small Subunit And Secreted Galectin-3, Imjoo Jang

Wayne State University Dissertations

Cell migration is a fundamental physical process for wound repair, innate immune response, embryonic development, inflammatory responses as well as cancer metastasis. Biochemical and mechanical cues present inside and outside the cell can modulate the mechanical aspects of cell migration. During cell migration, traction forces are generated by the contraction of the actomyosin cytoskeleton and transmitted to the extracellular matrix through integrin-mediated focal adhesions, facilitating the forward movement of the cell. Although regulating traction force is central to achieving successful cell migration, the detailed mechanism of the force production is still largely unclear. The calpain family of proteases has been …

Modulation Of Pharyngeal Health In Bacterial Diet-Dependent Survival, Deniz Sifoglu

Wayne State University Dissertations

ABSTRACT

MODULATION OF PHARYNGEAL HEALTH IN BACTERIAL DIET-DEPENDENT SURVIVAL

by

DENIZ SIFOGLU

August 2021

Advisor: Dr. Joy Alcedo Major: Biological Sciences Degree: Doctor of Philosophy Both diet and bacterial microbiome modulate insulin signaling, which regulates key physiological processes that are important for survival. However, the mechanisms through which diet and the microbiome modulate insulin signaling remain unclear. To understand these mechanisms, I turned to the nematode worm C. elegans, whose diet consists of different types of bacteria. Like humans and other animals, C. elegans has to modulate its responses to its diet and to bacteria to optimize its survival. Because …

Hypochlorite-Mediated Oxidation Of Dopamine: Implications In Parkinson’S Disease And Manganism, Praneet Kaur Marwah

Wayne State University Dissertations

Both Parkinson’s disease and manganism (a condition caused by chronic exposure to excessive levels of manganese) affect the extrapyramidal system of the brain, disrupt dopaminergic signaling and cause similar motor symptoms. While there is no physiological explanation for the susceptibility of dopamine-rich regions of the brain in both disorders, dopamine itself is a likely candidate. Dopamine can undergo both enzymatic and spontaneous oxidation, and the principal product of dopamine oxidation in vivo is cysteinyl dopamine. We demonstrate here that hypochlorous acid, which is produced in the brain by the enzyme myeloperoxidase, converts cysteinyl dopamine into a neurotoxic dihydrobenzothiazine, DHBT-1, that …

Crop Salinity Tolerance Induction Using Novel Biostimulants (Saltibio), Elomofe Ikuyinminu

Theses

Salinity is one of the major abiotic stresses affecting crop production, especially in arid and semi-arid areas. Most of the vegetable crops are salt sensitive, growing inadequately in salinised soils due to the accumulation of toxic ions from prolonged, inadequate irrigation programs. A meaningful approach to counteract salinity stress and increase crop yield is the use of protein hydrolysate biostimulants (PHBs). The main objectives of this study were to generate legume-derived PHBs by enzymatic hydrolysis, evaluate their ability to induce salinity stress tolerance in plants, and understand their mode of action. A full compositional and structural analysis of the generated …

Defining The Potential Of Gene Therapy With Bone Morphogenetic Proteins As A Novel Therapeutic Approach In Parkinson’S Disease, Susan Rebecca Goulding

Theses

Parkinson’s disease is a neurodegenerative disorder, characterised by the progressive degeneration of midbrain dopaminergic neurons, and the intracellular aggregation of the α-synuclein protein in neurons throughout the nervous system. These changes result in the characteristic motor impairments in Parkinson’s disease. Current treatments are solely symptomatic and therefore there is an unmet clinical need to develop new disease-modifying therapies that can alter disease progression. For over 25 years, one proposed experimental therapy has focused on the delivery of proteins called neurotrophic factors to the brain to prevent dopaminergic neuron degeneration. However, to date, clinical trials using the most well-known neurotrophic factors …

Investigating The Function Of Carboxypeptidase O Gene Paralogs From Xenopus Tropicalis, Ritchie Saint Jean

Master's Theses

Carboxypeptidase O (CPO) is a peptidase that is a member of the A/B subfamily of the metallocarboxypeptidases. This peptidase has been found in the brush border of the intestine and has specificity toward C-terminal acidic residues. CPO has been proposed to be involved in intestinal digestion and the formation of lipid droplets. Four copies of the CPO gene are present in the Xenopus tropicalis (tropical clawed frog) genome and are noted as CPO.1, CPO.2, CPO.3, and CPO.4. Not much is known about these genes regarding their properties and functions. In my research, I sought to investigate the properties and functions …