Biology Commons^™

Butterfly Eyespots Evolved Via Co-Option Of The Antennal Gene-Regulatory Network, Suriya Narayanan Murugesan, Heidi Connahs, Yuji Matsuoka, Mainak Das Gupta, Manizah Huq, Thomas Werner, Et. Al.

Michigan Tech Publications, Part 1

Butterfly eyespots are beautiful novel traits with an unknown developmental origin. Here we show that eyespots likely originated via co-option of the antennal gene-regulatory network (GRN) to novel locations on the wing. Using comparative transcriptome analysis, we show that eyespots cluster with antennae relative to multiple other tissues. Furthermore, three genes essential for eyespot development (Distal-less (Dll), spalt (sal), and Antennapedia (Antp)) share similar regulatory connections as those observed in the antennal GRN. CRISPR knockout of cis-regulatory elements (CREs) for Dll and sal led to the loss of eyespots and antennae, and …

Promoting Academic Integrity And Student Learning In Online Biology Courses, Jeremy L. Hsu

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The COVID-19 pandemic has caused an abrupt shift in biology courses, with many transitioning to online instruction. This has led to an increased concern about academic integrity and cheating in online courses. Here, I draw upon the peer-reviewed literature to provide evidence-based answers to four questions concerning cheating and online biology courses: (i) What types of cheating are prevalent with the shift to online instruction? (ii) Should instructors make assessments open book and open notes? (iii) How does cheating occur in biology lab courses? (iv) Finally, what strategies can biology instructors take to uphold academic integrity with online learning? I …

The Reemergence Of Eradicated Disease Due To Ecological Impact Of Climate Change, Claudia Kolakowski

Theses and Dissertations

Global warming is radically changing aspects of the Earth. As scientists continue to research the effects, the ramifications of melting permafrost is coming to light. We build off of a previously existing Anthrax model in the hopes to include climate change as a factor in Anthrax spread. Chapter II develops a simplified version of an Anthrax model. Parameters for the model are found by using previous research and eigenvalues are analyzed in order to find thresholds and equilibria. Chapter III consider the general solutions of the model through eigenvalues and eigenvectors. This model is then extended to include a parameter …

The Influence Of Juvenile Dinosaurs On Community Structure And Diversity, Katlin Schroeder, S. Kathleen Lyons, Felisa A. Smith

School of Biological Sciences: Faculty Publications

Despite dominating biodiversity in the Mesozoic, dinosaurs were not speciose. Oviparity constrained even gigantic dinosaurs to less than 15 kg at birth; growth through multiple morphologies led to the consumption of different resources at each stage. Such disparity between neonates and adults could have influenced the structure and diversity of dinosaur communities. Here, we quantified this effect for 43 communities across 136 million years and seven continents. We found that megatheropods (more than 1000 kg) such as tyrannosaurs had specific effects on dinosaur community structure. Although herbivores spanned the body size range, communities with megatheropods lacked carnivores weighing 100 to …

Most Published Selection Gradients Are Underestimated: Why This Is And How To Fix It, Niels Jeroen Dingemanse, Yimen G. Araya-Ajoy, David F. Westneat

Biology Faculty Publications

Ecologists and evolutionary biologists routinely estimate selection gradients. Most researchers seek to quantify selection on individual phenotypes, regardless of whether fixed or repeatedly expressed traits are studied. Selection gradients estimated to address such questions are attenuated unless analyses account for measurement error and biological sources of within-individual variation. Estimates of standardized selection gradients published in Evolution between 2010 and 2019 were primarily based on traits measured once (59% of 325 estimates). We show that those are attenuated: bias increases with decreasing repeatability but differently for linear versus nonlinear gradients. Others derived individual-mean trait values prior to analyses (41%), typically using …

Behavioral Analysis Of The Cryptoprocta Ferox In An Ex-Situ Condition, Emilie Alfonso

The Pegasus Review: UCF Undergraduate Research Journal

Fossas (Cryptoprocta ferox) are the top, endemic predators of Madagascar. Their populations are dwindling and are reported as “Vulnerable” by IUCN. In an effort to combat this, zoological facilities have placed the species on a captive breeding program. This study focuses on concerns one of those zoos had about their captive C. ferox. The purpose of this study was to collect activity budgets on the C. ferox to determine if there is a change in behavior due to construction occurring around the C. ferox’s habitat, analyze behavior changes during estrus, determine any behavior changes, as well …

Epigraph Hemagglutinin Vaccine Induces Broad Cross-Reactive Immunity Against Swine H3 Influenza Virus, Brianna L. Bullard, Brigette N. Corder, Jennifer Debeauchamp, Adam Rubrum, Bette Korber, Richard J. Webby, Eric A. Weaver

School of Biological Sciences: Faculty Publications

Influenza A virus infection in swine impacts the agricultural industry in addition to its zoonotic potential. Here, we utilize epigraph, a computational algorithm, to design a universal swine H3 influenza vaccine. The epigraph hemagglutinin proteins are delivered using an Adenovirus type 5 vector and are compared to a wild type hemagglutinin and the commercial inactivated vaccine, FluSure. In mice, epigraph vaccination leads to significant cross-reactive antibody and T-cell responses against a diverse panel of swH3 isolates. Epigraph vaccination also reduces weight loss and lung viral titers in mice after challenge with three divergent swH3 viruses. Vaccination studies in swine, the …

Biotic Homogenization Or Riparian Refugia? Urban And Wild Land Snail Assemblages Along A Subtropical Precipitation Gradient, Kathryn E. Perez, Briante S. Lewis Najev, Bradley O. Christoffersen, Jeffrey C. Nekola

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A noted impact of urbanization is the tendency for biotic homogenization, or the increase of similarity of geographically disparate communities. On the other hand, some urban habitats harbor biodiversity native to their region, a role potentially important in xeric landscapes, with irrigation increasing the coverage and availability of mesic habitats in an otherwise water-limited landscape. We assessed the relative importance of urban yards as agents of biotic homogenization or riparian refugia by characterizing community composition of Tamaulipan thornforest land snail assemblages across a pronounced precipitation gradient in far south Texas, USA. We quantified α- and β-diversity and assessed whether the …

Physiological Consequences Of Neuromodulation And The Cellular Properties That Underlie Them, Margaret Louise Demaegd

Theses and Dissertations

Neuronal activity is a product of more than the underlying neuronal connections. Modulatory influences like changes in the animal’s environment, the animals physiological state, or the release of neuromodulators can dramatically alter neuronal activity. Modulatory influences can be beneficial for the animal because they are a source of neuronal and behavioral plasticity, and they can provide neuronal circuits with the robustness needed to continue to function in new conditions, states, or tasks.However, malfunctions of the modulatory system can disrupt neuronal activity and lead to pathologies. Predicting how modulatory influences will alter neuronal activity is challenging because the underlying cellular and …

Synergistic Epistasis Enhances The Co-Operativity Of Mutualistic Interspecies Interactions., Serdar Turkarslan, Nejc Stopnisek, Anne W. Thompson, Christina E. Arens, Jacob J. Valenzuela, James Wilson, Kristopher A. Hunt, Jessica Hardwicke, Adrián López García De Lomana, Sujung Lim, Yee Mey Seah, Ying Fu, Liyou Wu, Jizhong Zhou, Kristina L. Hillesland, David A. Stahl, Nitin S. Baliga

Biology Faculty Publications and Presentations

Early evolution of mutualism is characterized by big and predictable adaptive changes, including the specialization of interacting partners, such as through deleterious mutations in genes not required for metabolic cross-feeding. We sought to investigate whether these early mutations improve cooperativity by manifesting in synergistic epistasis between genomes of the mutually interacting species. Specifically, we have characterized evolutionary trajectories of syntrophic interactions of Desulfovibrio vulgaris (Dv) with Methanococcus maripaludis (Mm) by longitudinally monitoring mutations accumulated over 1000 generations of nine independently evolved communities with analysis of the genotypic structure of one community down to the single-cell level. We discovered extensive parallelism …

Occurrence Of Ticks (Acari: Ixodidae) On Birds In Northwestern Lower Michigan, 2011-2019, William C. Scharf, Lisa Aukland, Gary W. Shugart, Sarah A. Hamer

The Great Lakes Entomologist

Abstract

Monitoring tick infestation of wildlife provides baseline tick

occurrence data that may have human or animal health implications. We collected 312 ticks of four species from 5,122 birds of 93 species while monitoring bird migration during 15 fall and spring seasons between 2011 and 2019 in the northern Lower Peninsula of Michigan. Twenty-seven of 93 bird species hosted ticks with an overall prevalence (=at least one tick) of 3.6% (185/5,122). Median burden was one tick/per infested bird with a range of 1-16 ticks per infested bird. Tick species collected were primarily Haemaphysalis leporispalustris (Packard) and Ixodes scapularis Say, with …

Observational Study Of Two Ex Situ North American River Otters (Lontra Canadensis), Julia Rifenberg

The Pegasus Review: UCF Undergraduate Research Journal

Zoos enable the ability to study how captive conditions impact the behaviors of animals. In this study, I observed two North American river otters housed at the Central Florida Zoo to evaluate behavioral changes after the male had been removed from the female for a month-long medical examination. The aim of this study was to 1) determine if mating behaviors were still occurring between the two river otters following the male’s removal and 2) to assess the welfare of the male and female river otters in captivity by observing their interactions and individual behaviors. Observed behaviors were compared to documented …

Nvp-Bez235 Or Jaki Treatment Leads To Decreased Survival Of Examined Gbm And Bbc Cells, Neftali Vazquez, Alma Lopez, Victoria Cuello, Michael W. Persans, Erin Schuenzel, Wendy Innis-Whitehouse, Megan Keniry

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Cancer cells almost universally harbor constitutively active Phosphatidylinositol-3 Kinase (PI3K) Pathway ac-tivity via mutation of key signaling components and/or epigenetic mechanisms. Scores of PI3K Pathway in-hibitors are currently under investigation as putative chemotherapeutics. However, feedback and stem cell mechanisms induced by PI3K Pathway inhibition can lead to reduced treatment efficacy. To address therapeutic barriers, we examined whether JAKi would reduce stem gene expression in a setting of PI3K Pathway inhibition in order to improve treatment efficacy. We targeted the PI3K Pathway with NVP-BEZ235 (dual PI3K and mTOR inhibitor) in combination with the Janus Kinase inhibitor JAKi in glioblastoma (GBM) and …

An Ecotoxicological Approach To Microplastics On Terrestrial And Aquatic Organisms: A Systematic Review In Assessment, Monitoring And Biological Impact, Omar A. Vazquez, Saydur Rahman

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Marine and land plastic debris biodegrades at micro- and nanoscales through progressive fragmentation. Oceanographic model studies confirm the presence of up to ~2.41 million tons of microplastics across the Atlantic, Pacific, and Indian subtropical gyres. Microplastics distribute from primary (e.g., exfoliating cleansers) and secondary (e.g., chemical deterioration) sources in the environment. This anthropogenic phenomenon poses a threat to the flora and fauna of terrestrial and aquatic ecosystems as ingestion and entanglement cases increase over time. This review focuses on the impact of microplastics across taxa at suggested environmentally relevant concentrations, and advances the groundwork for future ecotoxicological-based research on microplastics …

Physical Mapping Of The Anopheles (Nyssorhynchus) Darlingi Genomic Scaffolds, Míriam Silva Rafael, Leticia Cegatti Bridi, Igor V. Sharakhov, Osvaldo Marinotti, Maria V. Sharakhova, Vladimir A. Timoshevskiy, Giselle Moura Guimarães-Marques, Valéria Silva Santos, Carlos Gustavo Nunes Da Silva, Spartaco Astolfi-Filho, Wanderli Pedro Tadei

Biology Faculty Publications

The genome assembly of Anopheles darlingi consists of 2221 scaffolds (N50 = 115,072 bp) and has a size spanning 136.94 Mbp. This assembly represents one of the smallest genomes among Anopheles species. Anopheles darlingi genomic DNA fragments of ~37 Kb were cloned, end-sequenced, and used as probes for fluorescence in situ hybridization (FISH) with salivary gland polytene chromosomes. In total, we mapped nine DNA probes to scaffolds and autosomal arms. Comparative analysis of the An. darlingi scaffolds with homologous sequences of the Anopheles albimanus and Anopheles gambiae genomes identified chromosomal rearrangements among these species. Our results confirmed that physical mapping …

Potential Of Fungi Isolated From Diesel Contaminated Soil To Degrade Diesel, Oluwafemi Oyewole, Ramat Raji, Suzan Okeke, Gift Chukwuma, Japhet Yakubu

Tanzania Journal of Science

Diesel is a complex mixture and a common pollutant, consisting mainly of aliphatic hydrocarbons ranging from C9 to C23 and a number of aromatic compounds. The main purpose of this study was to isolate fungi from diesel contaminated soil for biodegradation of diesel contaminated soil. Two fungal species (Aspergillus flavus and Saccharomyces cerevisiae) were isolated from a diesel contaminated site using cultural and biochemical characterisation. The isolates were screened for their ability to utilize diesel as carbon source. The biodegradation rate of the fungi isolated was measured by determining the optical density using spectrophotometry. The fungal isolates were further tested …

Isolation And Quantification Of Flavonoids From Kigelia Africana (Lam.) Benth Fruit And Bark And Their Antiradical And Antibacterial Activities, Pamhidzai Dzomba, George Mhini

Tanzania Journal of Science

Kigelia africana is an evergreen deciduous tree used in Zimbabwe folklore medicine for wound and diabetes ulcers healing. This paper reports the isolation and quantification of flavonoids from stem barks and fruits of K. africana as well as their antibacterial and antiradical activities. Flavonoids in ethanol and ethyl-acetate extracts were quantified using UV-Vis spectrophotometry and were found to be 213.490 ± 0.001 mg/L and 36.614 ± 0.001 mg/L, respectively per quercetin equivalent. The preparative and analytical thin layer chromatography was used to profile the flavonoids from fruits and barks using ethyl-acetate and petroleum ether (3:7 v/v) mobile solvent systems. Ethanol …

Antibacterial Activities Of Hyphaene Thebaica (Doum Palm) Fruit Extracts Against Intestinal Microflora And Potential Constipation Associated Pathogens In Yola Metropolis, Nigeria, Joel Ewansiha, Chidimma Ugo, Damaris Kolawole, Lilian Orji

Tanzania Journal of Science

This study aimed at determining the antibacterial activities of Hyphaene thebaica fruit extracts against some intestinal constipation associated bacteria. Qualitative analysis of some phytochemical constituents, agar well diffusion and broth dilution methods were used to determine the zones of inhibition and minimum inhibitory concentration (MIC) of the plant extracts. Phytochemical components viz flavonoids, saponins, terpenoids, tannins, phenols, alkaloids, glycosides and steroids were detected in the plant extracts, and the test organisms were susceptible to the plant extracts. The diameter zone of inhibition (DZI) obtained with n-hexane extract ranged from 15.10 ± 0.51 mm to 2.0 ± 0.55 mm against K. …

Wastewater Clarification And Microbial Load Reduction Using Agro-Forestry And Agricultural Wastes, Joel Njewa, Ephraim Vunain, Timothy Biswick

Tanzania Journal of Science

Five agro-wastes, namely: cassava peels, Irish potato peels, Jatropha curcas seeds, Moringa oleifera seeds and rice husks were investigated as plant-based coagulants for turbidity and microbial load removal from sewage wastewater. Moringa oleifera and Jatropha curcas seeds before usage were defatted with 95% ethanol and the active coagulating component was extracted with 1.0 M NaCl. For the other three agro-wastes, their ashes were evaluated for turbidity and microbial load removal. The ash was prepared through pyrolysis of the raw biomass at a temperature of 800 °C for 3 h. The effect of pH, coagulant dose, settling time on turbidity reduction …

Characterization, Antimicrobial And Toxicity Studies Of Silver Nanoparticles Using Opuntia Ficus Indica Leaves Extracts From Effurun, Delta State, Christiana Ogwuche, Harrison Moses

Tanzania Journal of Science

The silver nanoparticles were synthesized by reacting silver nitrate, a metal precursor with the extract obtained from the leaves of Opuntia ficus indica, which acts as a reducing and stabilizing agent. Formation of silver nanoparticles was indicated by colour change from light yellow to dark brown which was confirmed by ultraviolet-visible (UV-Vis) spectroscopy showing surface plasmon band at 369 nm resulting from relatively small amount of reductive biomolecules for the silver ion reduction. Scanning electron microscope (SEM) analysis gave the morphology of the nanoparticles and showed that the silver particles were of spherical shape. Fourier transform infrared (FTIR) spectrometer presented …

Cellulase-Producing Bacteria Isolated From Mufindi Paper Mill Industrial Effluent, Iringa Tanzania, Erick Sinza, Aneth Mwakilili, Cyprian Mpinda, Sylvester Lyantagaye

Tanzania Journal of Science

Effluent and effluent-contaminated soil samples collected from Mufindi Paper Mill Limited, Iringa Tanzania were investigated for the presence of cellulolytic bacteria. The components of cellulase are endoglucanase, exoglucanase and β-glucosidase and these are very important for complete hydrolysis of cellulose to glucose monomers. Isolates were grown on nutrient agar and screened for cellulolytic activity on carboxymethylcellulose (CMC) agar plates using Gram’s iodine solution. Cellulases activities; endoglucanase, exoglucanase and β-glucosidase were assayed using CMC, avicel and cellobiose substrates, respectively by dinitrosalicyclic acid method. Out of 17 cellulolytic isolates obtained, crude enzyme extracts of only five isolates expressed all cellulases activities, the …

Acetylcholinesterase Activity And Oxidative Stress Biomarkers In Fiddler Crabs (Austruca Occidentalis) Along The Coastal Mangrove Areas Of Dar Es Salaam, Tanzania, James Lugata, Flora Stephano, Harishchandra Pratap

Tanzania Journal of Science

The aquatic organisms such as crustaceans serve as bioindicators of the environmental stressors which affect the aquatic ecosystems. The present study assessed environmental health status through fiddler crabs (Austruca occidentalis) towards oxidative stress biomarkers and AChE activity in mangroves with different levels of salinity and environmental contamination. Fiddler crabs were collected from Mtoni Kijichi, Kunduchi and Mbweni, which experience different levels of contamination from high to low along the Dar es Salaam coastline. Malondialdehyde the biomarker of oxidative stress was analysed by lipid peroxidation (LPO) assay and AChE activity was tested using Ellman assay in the crab tissues (muscles, hepatopancreas …

Effects Of Time On Ph, Total Bacteria Counts, And Total Hydrocarbon Contents In The Bioremediation Of Crude Oil Contaminated Soil Using Indigenous Bio-Stimulants, Ita Uwidia, Osalodion Uwidia

Tanzania Journal of Science

This study was conducted to investigate the effect of time on pH, total bacteria counts, and total hydrocarbon contents in the bioremediation of crude oil contaminated soil using pig waste and sawdust as bio-stimulants. Dried soil samples (500 g each) were weighed each into seven different plastic bowls, and each bowl was contaminated with 10 g of crude oil. Six of the contaminated soil samples in six of the plastic bowls were amended with a combination of pig waste and sawdust as bio-stimulants in the ratio of 1:1 in amounts of 150 g, 125 g, 100 g, 75 g, 50 …

Floristic Studies On Herbaceous And Grass Species Growing In The University Of Lagos, Nigeria, George Nodza, Ruth Anthony, Temitope Onuminya, Oluwatoyin Ogundipe

Tanzania Journal of Science

Rapid loss in flora diversity, changing patterns of vegetation and land use patterns in the University of Lagos Akoka campus has necessitated investigation on the herb and grass species so as to determine their compositions, structures and diversity within the area. Twenty sampling plots of 10m x 10m each were studied in five selected locations using random sampling. The samples were counted and identified using Flora of West Tropical Africa. A total of 75 taxa (herbs = 53 spp and grasses = 22 spp) belonging to 26 families and 64 genera were recorded in the area. Of all the families, …

Geometric Morphometric Comparison Of Abu Mullet, Planiliza Abu (Heckel, 1843) Populations In Bushehr Basin, Iran: Fatemeh Shabaninejad, Yazdan Keivany, Dara Bagheri, Fatemeh Shabaninejad, Yazdan Keivany, Dara Bagheri

Tanzania Journal of Science

Many fish behavior and habitats could be defined based on the fish morphology, thus, using the fish body shape, in addition  to its genetic characteristics, could be used to infer the type of fish habitat and its characteristics. This study aimed to compare the body shapes of five populations of abu mullet, Planiliza abu (Heckel, 1843), in Bushehr basin using geometric morphometric method. Some 162 specimens from Hendijan, Genaveh, Helleh, Kaki and Mond rivers were used. Three morphometric characters, total length (TL), fork length (FL) and standard length (SL) were measured. Samples were photographed from the left side, then 18 …

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez

Biology Faculty Articles

Profiles of symbiotic microbial communities (“microbiomes”) can provide insight into the natural history and ecology of their hosts. Using high throughput DNA sequencing of the 16S rRNA V4 region, microbiomes of five shark species in South Florida (nurse, lemon, sandbar, Caribbean reef, and tiger) have been characterized for the first time. The microbiomes show species specific microbiome composition, distinct from surrounding seawater. Shark anatomical location (gills, teeth, skin, cloaca) affected the diversity of microbiomes. An in-depth analysis of teeth communities revealed species specific microbial communities. For example, the genus Haemophilus, explained 7.0% of the differences of the teeth microbiomes …

Noise Distracts Foraging Bats, Louise C. Allen, Nickolay I. Hristov, Juliette J. Rubin, Joseph T. Lightsey, Jesse R. Barber

Biology Faculty Publications and Presentations

Predators frequently must detect and localize their prey in challenging environments. Noisy environments have been prevalent across the evolutionary history of predator–prey relationships, but now with increasing anthropogenic activities noise is becoming a more prominent feature of many landscapes. Here, we use the gleaning pallid bat, Antrozous pallidus, to investigate the mechanism by which noise disrupts hunting behaviour. Noise can primarily function to mask—obscure by spectrally overlapping a cue of interest, or distract—occupy an animal's attentional or other cognitive resources. Using band-limited white noise treatments that either overlapped the frequencies of a prey cue or did not …

Compoundhetvip: Compound Heterozygous Variant Identification Pipeline, Dustin B. Miller, Stephen R. Picollo

Faculty Publications

Compound Heterozygous ( CH) variant identification requires distinguishing maternally from paternally derived nucleotides, a process that requires numerous computational tools. Using such tools often introduces unforeseen challenges such as installation procedures that are operating-system specific, software dependencies that must be installed, and formatting requirements for input files. To overcome these challenges, we developed Compound Heterozygous Variant Identification Pipeline (CompoundHetVIP), which uses a single Docker image to encapsulate commonly used software tools for file aggregation ( BCFtools or GATK4), VCF liftover ( Picard Tools), joint-genotyping ( GATK4), file conversion ( Plink2), phasing ( SHAPEIT2, Beagle …

Regulation Of Atr-Dependent Dna Damage Response By Nitric Oxide, Chay Teng Yeo, Jennifer S. Stancill, Brendon J. Oleson, Jamie K. Schnuck, Joshua D. Stafford, Aaron Naatz, Polly A. Hansen, John A. Corbett

Biological Sciences Faculty Research & Creative Works

We have shown that nitric oxide limits ataxia-telangiectasia mutated signaling by inhibiting mitochondrial oxidative metabolism in a β-cell selective manner. In this study, we examined the actions of nitric oxide on a second DNA damage response transducer kinase, ataxia-telangiectasia and Rad3- related protein (ATR). In β-cells and non–β-cells, nitric oxide activates ATR signaling by inhibiting ribonucleotide reductase; however, when produced at inducible nitric oxide synthase– derived (low micromolar) levels, nitric oxide impairs ATR signaling in a β-cell selective manner. The inhibitory actions of nitric oxide are associated with impaired mitochondrial oxidative metabolism and lack of glycolytic compensation that result in …

Fear Of Predators In Free-Living Wildlife Reduces Population Growth Over Generations, Marek C. Allen, Michael Clinchy, Liana Y. Zanette

Biology Publications

Data set for article in Fear of predators in free ‐ living wildlife reduces population growth over generations

in

Proceedings of the National Academy of Sciences of the United States of America